Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04700

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04680 and PGA1_c04690 are separated by 125 nucleotidesPGA1_c04690 and PGA1_c04700 are separated by 39 nucleotidesPGA1_c04700 and PGA1_c04710 are separated by 67 nucleotides PGA1_c04680: PGA1_c04680 - transcriptional regulator, LysR family, at 460,198 to 461,106 _c04680 PGA1_c04690: PGA1_c04690 - putative phytanoyl-CoA dioxygenase, at 461,232 to 462,029 _c04690 PGA1_c04700: PGA1_c04700 - hypothetical protein, at 462,069 to 463,013 _c04700 PGA1_c04710: PGA1_c04710 - (dimethylallyl)adenosine tRNA methylthiotransferase MiaB, at 463,081 to 464,403 _c04710 Position (kb) 462 463 464Strain fitness (log2 ratio) -1 0 1 2at 461.071 kb on + strandat 461.091 kb on + strandat 461.151 kb on + strandat 461.152 kb on - strandat 461.164 kb on - strandat 461.236 kb on - strandat 461.289 kb on + strandat 461.289 kb on + strandat 461.289 kb on + strandat 461.297 kb on - strandat 461.348 kb on - strand, within PGA1_c04690at 461.366 kb on + strand, within PGA1_c04690at 461.435 kb on - strand, within PGA1_c04690at 461.437 kb on + strand, within PGA1_c04690at 461.443 kb on - strand, within PGA1_c04690at 461.466 kb on + strand, within PGA1_c04690at 461.478 kb on + strand, within PGA1_c04690at 461.493 kb on + strand, within PGA1_c04690at 461.501 kb on - strand, within PGA1_c04690at 461.543 kb on - strand, within PGA1_c04690at 461.557 kb on + strand, within PGA1_c04690at 461.557 kb on + strand, within PGA1_c04690at 461.615 kb on + strand, within PGA1_c04690at 461.643 kb on - strand, within PGA1_c04690at 461.676 kb on - strand, within PGA1_c04690at 461.687 kb on - strand, within PGA1_c04690at 461.710 kb on + strand, within PGA1_c04690at 461.718 kb on - strand, within PGA1_c04690at 461.722 kb on + strand, within PGA1_c04690at 461.748 kb on + strand, within PGA1_c04690at 461.748 kb on + strand, within PGA1_c04690at 461.748 kb on + strand, within PGA1_c04690at 461.753 kb on + strand, within PGA1_c04690at 461.756 kb on - strand, within PGA1_c04690at 461.756 kb on - strand, within PGA1_c04690at 461.756 kb on - strand, within PGA1_c04690at 461.847 kb on - strand, within PGA1_c04690at 461.900 kb on + strand, within PGA1_c04690at 461.911 kb on + strand, within PGA1_c04690at 461.926 kb on + strand, within PGA1_c04690at 461.926 kb on + strand, within PGA1_c04690at 461.934 kb on - strand, within PGA1_c04690at 461.944 kb on - strand, within PGA1_c04690at 461.944 kb on - strand, within PGA1_c04690at 461.983 kb on - strandat 461.985 kb on - strandat 462.032 kb on + strandat 462.059 kb on + strandat 462.067 kb on - strandat 462.085 kb on + strandat 462.085 kb on + strandat 462.093 kb on - strandat 462.139 kb on + strandat 462.164 kb on - strand, within PGA1_c04700at 462.197 kb on + strand, within PGA1_c04700at 462.197 kb on + strand, within PGA1_c04700at 462.213 kb on - strand, within PGA1_c04700at 462.237 kb on - strand, within PGA1_c04700at 462.252 kb on + strand, within PGA1_c04700at 462.260 kb on - strand, within PGA1_c04700at 462.260 kb on - strand, within PGA1_c04700at 462.261 kb on + strand, within PGA1_c04700at 462.267 kb on - strand, within PGA1_c04700at 462.269 kb on - strand, within PGA1_c04700at 462.272 kb on - strand, within PGA1_c04700at 462.272 kb on - strand, within PGA1_c04700at 462.274 kb on - strand, within PGA1_c04700at 462.274 kb on - strand, within PGA1_c04700at 462.275 kb on + strand, within PGA1_c04700at 462.305 kb on + strand, within PGA1_c04700at 462.481 kb on - strand, within PGA1_c04700at 462.543 kb on + strand, within PGA1_c04700at 462.551 kb on - strand, within PGA1_c04700at 462.561 kb on + strand, within PGA1_c04700at 462.603 kb on - strand, within PGA1_c04700at 462.605 kb on - strand, within PGA1_c04700at 462.651 kb on - strand, within PGA1_c04700at 462.651 kb on - strand, within PGA1_c04700at 462.651 kb on - strand, within PGA1_c04700at 462.653 kb on + strand, within PGA1_c04700at 462.763 kb on - strand, within PGA1_c04700at 462.789 kb on - strand, within PGA1_c04700at 462.789 kb on - strand, within PGA1_c04700at 462.812 kb on + strand, within PGA1_c04700at 462.815 kb on - strand, within PGA1_c04700at 462.824 kb on + strand, within PGA1_c04700at 462.824 kb on + strand, within PGA1_c04700at 462.830 kb on + strand, within PGA1_c04700at 462.832 kb on - strand, within PGA1_c04700at 462.843 kb on - strand, within PGA1_c04700at 462.847 kb on + strand, within PGA1_c04700at 462.855 kb on - strand, within PGA1_c04700at 462.872 kb on - strand, within PGA1_c04700at 462.920 kb on + strandat 462.941 kb on - strandat 462.969 kb on - strandat 463.000 kb on + strandat 463.027 kb on + strandat 463.075 kb on + strandat 463.110 kb on + strandat 463.118 kb on - strandat 463.146 kb on + strandat 463.168 kb on + strandat 463.176 kb on - strandat 463.218 kb on + strand, within PGA1_c04710at 463.226 kb on + strand, within PGA1_c04710at 463.227 kb on - strand, within PGA1_c04710at 463.270 kb on - strand, within PGA1_c04710at 463.270 kb on - strand, within PGA1_c04710at 463.275 kb on - strand, within PGA1_c04710at 463.293 kb on - strand, within PGA1_c04710at 463.331 kb on + strand, within PGA1_c04710at 463.331 kb on + strand, within PGA1_c04710at 463.445 kb on + strand, within PGA1_c04710at 463.452 kb on - strand, within PGA1_c04710at 463.453 kb on + strand, within PGA1_c04710at 463.453 kb on - strand, within PGA1_c04710at 463.453 kb on - strand, within PGA1_c04710at 463.453 kb on - strand, within PGA1_c04710at 463.453 kb on - strand, within PGA1_c04710at 463.453 kb on - strand, within PGA1_c04710at 463.520 kb on - strand, within PGA1_c04710at 463.520 kb on - strand, within PGA1_c04710at 463.523 kb on + strand, within PGA1_c04710at 463.529 kb on - strand, within PGA1_c04710at 463.584 kb on + strand, within PGA1_c04710at 463.592 kb on - strand, within PGA1_c04710at 463.639 kb on + strand, within PGA1_c04710at 463.639 kb on + strand, within PGA1_c04710at 463.655 kb on + strand, within PGA1_c04710at 463.655 kb on + strand, within PGA1_c04710at 463.733 kb on + strand, within PGA1_c04710at 463.780 kb on - strand, within PGA1_c04710at 463.837 kb on + strand, within PGA1_c04710at 463.872 kb on - strand, within PGA1_c04710at 463.874 kb on + strand, within PGA1_c04710at 463.884 kb on + strand, within PGA1_c04710at 463.892 kb on - strand, within PGA1_c04710at 463.916 kb on + strand, within PGA1_c04710at 463.917 kb on - strand, within PGA1_c04710

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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461,071 + +0.6
461,091 + -0.7
461,151 + +0.1
461,152 - +0.5
461,164 - -0.4
461,236 - -1.0
461,289 + +0.3
461,289 + -0.0
461,289 + +0.2
461,297 - -1.3
461,348 - PGA1_c04690 0.15 -0.2
461,366 + PGA1_c04690 0.17 -0.0
461,435 - PGA1_c04690 0.25 -0.2
461,437 + PGA1_c04690 0.26 +0.7
461,443 - PGA1_c04690 0.26 +0.1
461,466 + PGA1_c04690 0.29 +0.0
461,478 + PGA1_c04690 0.31 -0.0
461,493 + PGA1_c04690 0.33 +0.2
461,501 - PGA1_c04690 0.34 +0.3
461,543 - PGA1_c04690 0.39 +0.1
461,557 + PGA1_c04690 0.41 +0.1
461,557 + PGA1_c04690 0.41 -0.4
461,615 + PGA1_c04690 0.48 -0.6
461,643 - PGA1_c04690 0.52 +0.4
461,676 - PGA1_c04690 0.56 +0.3
461,687 - PGA1_c04690 0.57 -0.4
461,710 + PGA1_c04690 0.60 +0.2
461,718 - PGA1_c04690 0.61 +0.2
461,722 + PGA1_c04690 0.61 +1.3
461,748 + PGA1_c04690 0.65 -0.7
461,748 + PGA1_c04690 0.65 +0.0
461,748 + PGA1_c04690 0.65 -0.2
461,753 + PGA1_c04690 0.65 -0.3
461,756 - PGA1_c04690 0.66 +0.2
461,756 - PGA1_c04690 0.66 -1.4
461,756 - PGA1_c04690 0.66 +0.6
461,847 - PGA1_c04690 0.77 +0.2
461,900 + PGA1_c04690 0.84 -0.4
461,911 + PGA1_c04690 0.85 -0.1
461,926 + PGA1_c04690 0.87 +0.1
461,926 + PGA1_c04690 0.87 -0.3
461,934 - PGA1_c04690 0.88 +0.9
461,944 - PGA1_c04690 0.89 -1.3
461,944 - PGA1_c04690 0.89 -0.6
461,983 - +0.2
461,985 - -0.2
462,032 + -0.5
462,059 + +0.5
462,067 - -0.0
462,085 + -0.8
462,085 + +0.8
462,093 - +0.1
462,139 + +0.8
462,164 - PGA1_c04700 0.10 +0.3
462,197 + PGA1_c04700 0.14 +0.2
462,197 + PGA1_c04700 0.14 +2.0
462,213 - PGA1_c04700 0.15 -0.6
462,237 - PGA1_c04700 0.18 -0.7
462,252 + PGA1_c04700 0.19 +0.6
462,260 - PGA1_c04700 0.20 -0.4
462,260 - PGA1_c04700 0.20 +1.3
462,261 + PGA1_c04700 0.20 +0.2
462,267 - PGA1_c04700 0.21 +0.9
462,269 - PGA1_c04700 0.21 +0.7
462,272 - PGA1_c04700 0.21 +0.1
462,272 - PGA1_c04700 0.21 -0.4
462,274 - PGA1_c04700 0.22 +0.7
462,274 - PGA1_c04700 0.22 +0.2
462,275 + PGA1_c04700 0.22 +1.5
462,305 + PGA1_c04700 0.25 +0.5
462,481 - PGA1_c04700 0.44 +0.2
462,543 + PGA1_c04700 0.50 +0.7
462,551 - PGA1_c04700 0.51 +1.3
462,561 + PGA1_c04700 0.52 +0.4
462,603 - PGA1_c04700 0.57 +0.9
462,605 - PGA1_c04700 0.57 +0.4
462,651 - PGA1_c04700 0.62 +0.4
462,651 - PGA1_c04700 0.62 -0.9
462,651 - PGA1_c04700 0.62 +0.2
462,653 + PGA1_c04700 0.62 +1.1
462,763 - PGA1_c04700 0.73 +0.4
462,789 - PGA1_c04700 0.76 -0.3
462,789 - PGA1_c04700 0.76 +0.4
462,812 + PGA1_c04700 0.79 +0.9
462,815 - PGA1_c04700 0.79 +0.6
462,824 + PGA1_c04700 0.80 -0.8
462,824 + PGA1_c04700 0.80 -0.4
462,830 + PGA1_c04700 0.81 +0.6
462,832 - PGA1_c04700 0.81 -0.2
462,843 - PGA1_c04700 0.82 +0.7
462,847 + PGA1_c04700 0.82 -0.3
462,855 - PGA1_c04700 0.83 +0.7
462,872 - PGA1_c04700 0.85 +0.9
462,920 + +0.4
462,941 - -0.5
462,969 - +0.7
463,000 + -0.4
463,027 + -0.3
463,075 + +0.6
463,110 + -0.8
463,118 - +0.3
463,146 + -0.0
463,168 + -0.3
463,176 - -0.9
463,218 + PGA1_c04710 0.10 -1.1
463,226 + PGA1_c04710 0.11 -0.6
463,227 - PGA1_c04710 0.11 +0.3
463,270 - PGA1_c04710 0.14 +0.1
463,270 - PGA1_c04710 0.14 +0.8
463,275 - PGA1_c04710 0.15 -0.1
463,293 - PGA1_c04710 0.16 -0.6
463,331 + PGA1_c04710 0.19 -0.3
463,331 + PGA1_c04710 0.19 +1.0
463,445 + PGA1_c04710 0.28 -0.1
463,452 - PGA1_c04710 0.28 +0.6
463,453 + PGA1_c04710 0.28 -0.3
463,453 - PGA1_c04710 0.28 +0.1
463,453 - PGA1_c04710 0.28 -0.2
463,453 - PGA1_c04710 0.28 -0.2
463,453 - PGA1_c04710 0.28 +0.5
463,453 - PGA1_c04710 0.28 -1.0
463,520 - PGA1_c04710 0.33 +0.3
463,520 - PGA1_c04710 0.33 -0.8
463,523 + PGA1_c04710 0.33 -0.5
463,529 - PGA1_c04710 0.34 -0.2
463,584 + PGA1_c04710 0.38 -0.5
463,592 - PGA1_c04710 0.39 +0.2
463,639 + PGA1_c04710 0.42 -1.0
463,639 + PGA1_c04710 0.42 -0.5
463,655 + PGA1_c04710 0.43 -0.1
463,655 + PGA1_c04710 0.43 -0.8
463,733 + PGA1_c04710 0.49 +0.3
463,780 - PGA1_c04710 0.53 +0.4
463,837 + PGA1_c04710 0.57 -0.0
463,872 - PGA1_c04710 0.60 -0.1
463,874 + PGA1_c04710 0.60 +0.2
463,884 + PGA1_c04710 0.61 -0.8
463,892 - PGA1_c04710 0.61 -0.7
463,916 + PGA1_c04710 0.63 -0.2
463,917 - PGA1_c04710 0.63 -0.4

Or see this region's nucleotide sequence