Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c03900

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c03880 and PGA1_c03890 are separated by 94 nucleotidesPGA1_c03890 and PGA1_c03900 are separated by 108 nucleotidesPGA1_c03900 and PGA1_c03910 overlap by 4 nucleotidesPGA1_c03910 and PGA1_c03920 are separated by 95 nucleotides PGA1_c03880: PGA1_c03880 - putative transcriptional activator protein RaiR, at 374,695 to 375,414 _c03880 PGA1_c03890: PGA1_c03890 - putative acyl-homoserine-lactone synthase RaiI, at 375,509 to 376,150 _c03890 PGA1_c03900: PGA1_c03900 - hypothetical protein, at 376,259 to 377,797 _c03900 PGA1_c03910: PGA1_c03910 - short chain dehydrogenase / reductase, at 377,794 to 378,552 _c03910 PGA1_c03920: PGA1_c03920 - Putative transmembrane protein (Alph_Pro_TM)., at 378,648 to 379,538 _c03920 Position (kb) 376 377 378Strain fitness (log2 ratio) -2 -1 0 1 2 3at 375.265 kb on + strand, within PGA1_c03880at 375.265 kb on + strand, within PGA1_c03880at 375.265 kb on + strand, within PGA1_c03880at 375.265 kb on + strand, within PGA1_c03880at 375.265 kb on + strand, within PGA1_c03880at 375.273 kb on - strand, within PGA1_c03880at 375.273 kb on - strand, within PGA1_c03880at 375.273 kb on - strand, within PGA1_c03880at 375.273 kb on - strand, within PGA1_c03880at 375.273 kb on - strand, within PGA1_c03880at 375.273 kb on - strand, within PGA1_c03880at 375.327 kb on + strand, within PGA1_c03880at 375.342 kb on + strand, within PGA1_c03880at 375.355 kb on + strandat 375.362 kb on + strandat 375.365 kb on + strandat 375.365 kb on + strandat 375.365 kb on - strandat 375.367 kb on + strandat 375.370 kb on - strandat 375.370 kb on - strandat 375.373 kb on - strandat 375.375 kb on - strandat 375.375 kb on - strandat 375.375 kb on - strandat 375.392 kb on + strandat 375.392 kb on + strandat 375.392 kb on + strandat 375.392 kb on + strandat 375.392 kb on + strandat 375.392 kb on + strandat 375.392 kb on + strandat 375.392 kb on + strandat 375.392 kb on + strandat 375.392 kb on + strandat 375.400 kb on - strandat 375.400 kb on - strandat 375.400 kb on - strandat 375.402 kb on + strandat 375.442 kb on + strandat 375.449 kb on - strandat 375.498 kb on - strandat 375.499 kb on + strandat 375.499 kb on + strandat 375.512 kb on - strandat 375.534 kb on + strandat 375.534 kb on + strandat 375.534 kb on + strandat 375.542 kb on - strandat 375.542 kb on - strandat 375.542 kb on - strandat 375.542 kb on - strandat 375.542 kb on - strandat 375.547 kb on - strandat 375.587 kb on - strand, within PGA1_c03890at 375.587 kb on - strand, within PGA1_c03890at 375.587 kb on - strand, within PGA1_c03890at 375.589 kb on + strand, within PGA1_c03890at 375.606 kb on + strand, within PGA1_c03890at 375.647 kb on - strand, within PGA1_c03890at 375.648 kb on + strand, within PGA1_c03890at 375.665 kb on - strand, within PGA1_c03890at 375.737 kb on - strand, within PGA1_c03890at 375.737 kb on - strand, within PGA1_c03890at 375.767 kb on - strand, within PGA1_c03890at 375.769 kb on + strand, within PGA1_c03890at 375.777 kb on - strand, within PGA1_c03890at 375.777 kb on - strand, within PGA1_c03890at 375.828 kb on + strand, within PGA1_c03890at 375.844 kb on - strand, within PGA1_c03890at 375.862 kb on + strand, within PGA1_c03890at 375.865 kb on - strand, within PGA1_c03890at 375.865 kb on - strand, within PGA1_c03890at 375.872 kb on + strand, within PGA1_c03890at 375.874 kb on + strand, within PGA1_c03890at 375.922 kb on - strand, within PGA1_c03890at 375.957 kb on + strand, within PGA1_c03890at 375.957 kb on + strand, within PGA1_c03890at 375.993 kb on + strand, within PGA1_c03890at 376.002 kb on + strand, within PGA1_c03890at 376.026 kb on + strand, within PGA1_c03890at 376.045 kb on - strand, within PGA1_c03890at 376.057 kb on + strand, within PGA1_c03890at 376.078 kb on + strand, within PGA1_c03890at 376.086 kb on - strandat 376.123 kb on + strandat 376.123 kb on + strandat 376.174 kb on - strandat 376.180 kb on + strandat 376.183 kb on - strandat 376.188 kb on - strandat 376.188 kb on - strandat 376.188 kb on - strandat 376.368 kb on - strandat 376.441 kb on + strand, within PGA1_c03900at 376.444 kb on + strand, within PGA1_c03900at 376.452 kb on - strand, within PGA1_c03900at 376.526 kb on - strand, within PGA1_c03900at 376.532 kb on - strand, within PGA1_c03900at 376.606 kb on + strand, within PGA1_c03900at 376.618 kb on + strand, within PGA1_c03900at 376.654 kb on + strand, within PGA1_c03900at 376.654 kb on - strand, within PGA1_c03900at 376.703 kb on + strand, within PGA1_c03900at 376.703 kb on + strand, within PGA1_c03900at 376.711 kb on - strand, within PGA1_c03900at 376.711 kb on - strand, within PGA1_c03900at 376.711 kb on - strand, within PGA1_c03900at 376.711 kb on - strand, within PGA1_c03900at 376.730 kb on - strand, within PGA1_c03900at 377.040 kb on + strand, within PGA1_c03900at 377.122 kb on + strand, within PGA1_c03900at 377.123 kb on + strand, within PGA1_c03900at 377.176 kb on - strand, within PGA1_c03900at 377.203 kb on + strand, within PGA1_c03900at 377.234 kb on + strand, within PGA1_c03900at 377.261 kb on + strand, within PGA1_c03900at 377.261 kb on + strand, within PGA1_c03900at 377.268 kb on + strand, within PGA1_c03900at 377.335 kb on + strand, within PGA1_c03900at 377.335 kb on + strand, within PGA1_c03900at 377.335 kb on + strand, within PGA1_c03900at 377.335 kb on + strand, within PGA1_c03900at 377.335 kb on + strand, within PGA1_c03900at 377.343 kb on - strand, within PGA1_c03900at 377.343 kb on - strand, within PGA1_c03900at 377.343 kb on - strand, within PGA1_c03900at 377.343 kb on - strand, within PGA1_c03900at 377.343 kb on - strand, within PGA1_c03900at 377.366 kb on - strand, within PGA1_c03900at 377.415 kb on + strand, within PGA1_c03900at 377.415 kb on + strand, within PGA1_c03900at 377.517 kb on + strand, within PGA1_c03900at 377.529 kb on + strand, within PGA1_c03900at 377.547 kb on - strand, within PGA1_c03900at 377.554 kb on - strand, within PGA1_c03900at 377.554 kb on - strand, within PGA1_c03900at 377.619 kb on - strand, within PGA1_c03900at 377.665 kb on + strandat 377.675 kb on + strandat 377.683 kb on - strandat 377.726 kb on - strandat 377.747 kb on + strandat 377.747 kb on + strandat 377.755 kb on - strandat 377.767 kb on - strandat 377.767 kb on - strandat 377.798 kb on + strandat 377.813 kb on - strandat 377.835 kb on - strandat 377.918 kb on + strand, within PGA1_c03910at 377.926 kb on - strand, within PGA1_c03910at 377.927 kb on + strand, within PGA1_c03910at 377.935 kb on - strand, within PGA1_c03910at 377.959 kb on + strand, within PGA1_c03910at 377.988 kb on + strand, within PGA1_c03910at 377.988 kb on + strand, within PGA1_c03910at 377.988 kb on + strand, within PGA1_c03910at 377.996 kb on - strand, within PGA1_c03910at 378.001 kb on + strand, within PGA1_c03910at 378.037 kb on - strand, within PGA1_c03910at 378.086 kb on + strand, within PGA1_c03910at 378.210 kb on - strand, within PGA1_c03910at 378.254 kb on - strand, within PGA1_c03910at 378.304 kb on - strand, within PGA1_c03910at 378.304 kb on - strand, within PGA1_c03910at 378.304 kb on - strand, within PGA1_c03910at 378.304 kb on - strand, within PGA1_c03910at 378.304 kb on - strand, within PGA1_c03910at 378.306 kb on + strand, within PGA1_c03910at 378.316 kb on - strand, within PGA1_c03910at 378.399 kb on + strand, within PGA1_c03910at 378.399 kb on + strand, within PGA1_c03910at 378.399 kb on + strand, within PGA1_c03910at 378.407 kb on - strand, within PGA1_c03910at 378.407 kb on - strand, within PGA1_c03910at 378.407 kb on - strand, within PGA1_c03910at 378.427 kb on + strand, within PGA1_c03910at 378.452 kb on - strand, within PGA1_c03910at 378.481 kb on - strandat 378.626 kb on + strandat 378.644 kb on - strandat 378.725 kb on - strandat 378.773 kb on + strand, within PGA1_c03920at 378.773 kb on + strand, within PGA1_c03920

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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375,265 + PGA1_c03880 0.79 +2.0
375,265 + PGA1_c03880 0.79 +2.2
375,265 + PGA1_c03880 0.79 +2.4
375,265 + PGA1_c03880 0.79 +3.0
375,265 + PGA1_c03880 0.79 +2.3
375,273 - PGA1_c03880 0.80 +2.2
375,273 - PGA1_c03880 0.80 +2.3
375,273 - PGA1_c03880 0.80 +2.4
375,273 - PGA1_c03880 0.80 +2.4
375,273 - PGA1_c03880 0.80 +2.1
375,273 - PGA1_c03880 0.80 +2.2
375,327 + PGA1_c03880 0.88 +2.3
375,342 + PGA1_c03880 0.90 +1.4
375,355 + +2.6
375,362 + +2.7
375,365 + +2.6
375,365 + +1.8
375,365 - +2.8
375,367 + +2.8
375,370 - +0.0
375,370 - +1.8
375,373 - +2.9
375,375 - +2.6
375,375 - +2.5
375,375 - +2.3
375,392 + +0.7
375,392 + +2.5
375,392 + +2.0
375,392 + +1.6
375,392 + +2.1
375,392 + +2.8
375,392 + +2.7
375,392 + +1.7
375,392 + +1.7
375,392 + +2.4
375,400 - +1.7
375,400 - +2.2
375,400 - +2.2
375,402 + +0.6
375,442 + -0.3
375,449 - +1.0
375,498 - -0.7
375,499 + +0.1
375,499 + -0.4
375,512 - +0.2
375,534 + -0.9
375,534 + -1.3
375,534 + -0.2
375,542 - -0.5
375,542 - +0.2
375,542 - -0.2
375,542 - +0.6
375,542 - -0.8
375,547 - -0.1
375,587 - PGA1_c03890 0.12 +0.3
375,587 - PGA1_c03890 0.12 -0.4
375,587 - PGA1_c03890 0.12 -0.2
375,589 + PGA1_c03890 0.12 +0.0
375,606 + PGA1_c03890 0.15 +1.3
375,647 - PGA1_c03890 0.21 +0.2
375,648 + PGA1_c03890 0.22 +1.3
375,665 - PGA1_c03890 0.24 +1.0
375,737 - PGA1_c03890 0.36 -0.5
375,737 - PGA1_c03890 0.36 +0.9
375,767 - PGA1_c03890 0.40 +0.2
375,769 + PGA1_c03890 0.40 -0.2
375,777 - PGA1_c03890 0.42 -0.4
375,777 - PGA1_c03890 0.42 +0.8
375,828 + PGA1_c03890 0.50 +0.0
375,844 - PGA1_c03890 0.52 -0.6
375,862 + PGA1_c03890 0.55 +2.2
375,865 - PGA1_c03890 0.55 +0.4
375,865 - PGA1_c03890 0.55 -1.2
375,872 + PGA1_c03890 0.57 -0.7
375,874 + PGA1_c03890 0.57 +0.4
375,922 - PGA1_c03890 0.64 -2.1
375,957 + PGA1_c03890 0.70 -0.1
375,957 + PGA1_c03890 0.70 +0.1
375,993 + PGA1_c03890 0.75 -1.3
376,002 + PGA1_c03890 0.77 +0.4
376,026 + PGA1_c03890 0.81 -0.5
376,045 - PGA1_c03890 0.83 +0.4
376,057 + PGA1_c03890 0.85 -0.8
376,078 + PGA1_c03890 0.89 +0.4
376,086 - -0.0
376,123 + +1.3
376,123 + -0.4
376,174 - +0.2
376,180 + -0.3
376,183 - -0.6
376,188 - +0.8
376,188 - -0.5
376,188 - -0.5
376,368 - +0.2
376,441 + PGA1_c03900 0.12 -0.5
376,444 + PGA1_c03900 0.12 +1.1
376,452 - PGA1_c03900 0.13 -0.1
376,526 - PGA1_c03900 0.17 -0.0
376,532 - PGA1_c03900 0.18 -0.1
376,606 + PGA1_c03900 0.23 -0.5
376,618 + PGA1_c03900 0.23 -0.3
376,654 + PGA1_c03900 0.26 -0.6
376,654 - PGA1_c03900 0.26 +0.4
376,703 + PGA1_c03900 0.29 -0.7
376,703 + PGA1_c03900 0.29 +0.8
376,711 - PGA1_c03900 0.29 -0.8
376,711 - PGA1_c03900 0.29 +0.3
376,711 - PGA1_c03900 0.29 -1.1
376,711 - PGA1_c03900 0.29 -0.4
376,730 - PGA1_c03900 0.31 +0.6
377,040 + PGA1_c03900 0.51 -0.3
377,122 + PGA1_c03900 0.56 +1.9
377,123 + PGA1_c03900 0.56 +0.2
377,176 - PGA1_c03900 0.60 -0.5
377,203 + PGA1_c03900 0.61 +0.2
377,234 + PGA1_c03900 0.63 +0.5
377,261 + PGA1_c03900 0.65 -0.7
377,261 + PGA1_c03900 0.65 -0.8
377,268 + PGA1_c03900 0.66 -0.9
377,335 + PGA1_c03900 0.70 +0.4
377,335 + PGA1_c03900 0.70 -0.3
377,335 + PGA1_c03900 0.70 -1.0
377,335 + PGA1_c03900 0.70 -0.3
377,335 + PGA1_c03900 0.70 -0.4
377,343 - PGA1_c03900 0.70 +0.1
377,343 - PGA1_c03900 0.70 +0.0
377,343 - PGA1_c03900 0.70 +0.4
377,343 - PGA1_c03900 0.70 -1.2
377,343 - PGA1_c03900 0.70 +0.0
377,366 - PGA1_c03900 0.72 +0.1
377,415 + PGA1_c03900 0.75 -0.7
377,415 + PGA1_c03900 0.75 -0.5
377,517 + PGA1_c03900 0.82 -1.2
377,529 + PGA1_c03900 0.83 -0.3
377,547 - PGA1_c03900 0.84 +0.3
377,554 - PGA1_c03900 0.84 -0.4
377,554 - PGA1_c03900 0.84 -0.6
377,619 - PGA1_c03900 0.88 -1.5
377,665 + +1.9
377,675 + +0.0
377,683 - -0.4
377,726 - +0.1
377,747 + +0.0
377,747 + -0.3
377,755 - -0.3
377,767 - +0.0
377,767 - +0.3
377,798 + -0.2
377,813 - +0.5
377,835 - -0.4
377,918 + PGA1_c03910 0.16 +0.3
377,926 - PGA1_c03910 0.17 +0.2
377,927 + PGA1_c03910 0.18 +0.2
377,935 - PGA1_c03910 0.19 +0.1
377,959 + PGA1_c03910 0.22 -0.9
377,988 + PGA1_c03910 0.26 -0.7
377,988 + PGA1_c03910 0.26 +0.1
377,988 + PGA1_c03910 0.26 +0.5
377,996 - PGA1_c03910 0.27 +0.3
378,001 + PGA1_c03910 0.27 -0.2
378,037 - PGA1_c03910 0.32 -0.8
378,086 + PGA1_c03910 0.38 +0.8
378,210 - PGA1_c03910 0.55 -0.1
378,254 - PGA1_c03910 0.61 -0.4
378,304 - PGA1_c03910 0.67 -1.1
378,304 - PGA1_c03910 0.67 +0.9
378,304 - PGA1_c03910 0.67 -0.7
378,304 - PGA1_c03910 0.67 +0.5
378,304 - PGA1_c03910 0.67 -0.2
378,306 + PGA1_c03910 0.67 -0.2
378,316 - PGA1_c03910 0.69 +0.2
378,399 + PGA1_c03910 0.80 -0.3
378,399 + PGA1_c03910 0.80 -0.1
378,399 + PGA1_c03910 0.80 -0.1
378,407 - PGA1_c03910 0.81 -0.9
378,407 - PGA1_c03910 0.81 +0.2
378,407 - PGA1_c03910 0.81 +0.5
378,427 + PGA1_c03910 0.83 +0.3
378,452 - PGA1_c03910 0.87 -0.3
378,481 - -1.1
378,626 + +0.1
378,644 - -0.4
378,725 - -0.9
378,773 + PGA1_c03920 0.14 -0.5
378,773 + PGA1_c03920 0.14 -2.6

Or see this region's nucleotide sequence