Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p00440

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p00430 and PGA1_262p00440 are separated by 118 nucleotidesPGA1_262p00440 and PGA1_262p00450 overlap by 4 nucleotidesPGA1_262p00450 and PGA1_262p00460 are separated by 122 nucleotides PGA1_262p00430: PGA1_262p00430 - glucose transporter, periplasmic substrate-binding component (from data), at 51,827 to 52,852 _262p00430 PGA1_262p00440: PGA1_262p00440 - glucose transporter, permease component (from data), at 52,971 to 54,272 _262p00440 PGA1_262p00450: PGA1_262p00450 - glucose transporter, ATPase component (from data), at 54,269 to 55,051 _262p00450 PGA1_262p00460: PGA1_262p00460 - transcriptional regulator, MerR family, at 55,174 to 55,602 _262p00460 Position (kb) 52 53 54 55Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 51.989 kb on + strand, within PGA1_262p00430at 51.997 kb on - strand, within PGA1_262p00430at 52.107 kb on - strand, within PGA1_262p00430at 52.270 kb on + strand, within PGA1_262p00430at 52.375 kb on + strand, within PGA1_262p00430at 52.383 kb on - strand, within PGA1_262p00430at 52.383 kb on - strand, within PGA1_262p00430at 52.383 kb on - strand, within PGA1_262p00430at 52.383 kb on - strand, within PGA1_262p00430at 52.426 kb on - strand, within PGA1_262p00430at 52.697 kb on + strand, within PGA1_262p00430at 52.913 kb on - strandat 52.953 kb on + strandat 52.992 kb on - strandat 53.006 kb on + strandat 53.014 kb on - strandat 53.142 kb on - strand, within PGA1_262p00440at 53.189 kb on - strand, within PGA1_262p00440at 53.234 kb on + strand, within PGA1_262p00440at 53.253 kb on - strand, within PGA1_262p00440at 53.301 kb on + strand, within PGA1_262p00440at 53.546 kb on + strand, within PGA1_262p00440at 53.613 kb on + strand, within PGA1_262p00440at 53.671 kb on + strand, within PGA1_262p00440at 53.767 kb on - strand, within PGA1_262p00440at 53.972 kb on + strand, within PGA1_262p00440at 53.982 kb on - strand, within PGA1_262p00440at 54.029 kb on + strand, within PGA1_262p00440at 54.266 kb on + strandat 54.274 kb on - strandat 54.356 kb on + strand, within PGA1_262p00450at 54.379 kb on + strand, within PGA1_262p00450at 54.379 kb on + strand, within PGA1_262p00450at 54.387 kb on - strand, within PGA1_262p00450at 54.816 kb on + strand, within PGA1_262p00450at 54.970 kb on + strand, within PGA1_262p00450at 55.208 kb on + strandat 55.208 kb on + strandat 55.232 kb on + strand, within PGA1_262p00460at 55.232 kb on + strand, within PGA1_262p00460at 55.232 kb on + strand, within PGA1_262p00460at 55.240 kb on - strand, within PGA1_262p00460at 55.263 kb on + strand, within PGA1_262p00460

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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51,989 + PGA1_262p00430 0.16 -1.2
51,997 - PGA1_262p00430 0.17 -2.5
52,107 - PGA1_262p00430 0.27 -2.4
52,270 + PGA1_262p00430 0.43 -3.0
52,375 + PGA1_262p00430 0.53 -1.1
52,383 - PGA1_262p00430 0.54 -4.4
52,383 - PGA1_262p00430 0.54 -2.1
52,383 - PGA1_262p00430 0.54 -3.1
52,383 - PGA1_262p00430 0.54 -1.7
52,426 - PGA1_262p00430 0.58 -2.4
52,697 + PGA1_262p00430 0.85 -2.0
52,913 - -3.0
52,953 + -1.6
52,992 - -2.6
53,006 + -1.6
53,014 - -1.3
53,142 - PGA1_262p00440 0.13 +1.6
53,189 - PGA1_262p00440 0.17 -3.4
53,234 + PGA1_262p00440 0.20 -1.0
53,253 - PGA1_262p00440 0.22 -2.2
53,301 + PGA1_262p00440 0.25 -0.9
53,546 + PGA1_262p00440 0.44 -2.4
53,613 + PGA1_262p00440 0.49 -2.2
53,671 + PGA1_262p00440 0.54 -2.9
53,767 - PGA1_262p00440 0.61 -1.5
53,972 + PGA1_262p00440 0.77 -2.2
53,982 - PGA1_262p00440 0.78 -2.9
54,029 + PGA1_262p00440 0.81 -2.2
54,266 + -2.0
54,274 - -0.6
54,356 + PGA1_262p00450 0.11 -1.6
54,379 + PGA1_262p00450 0.14 +0.6
54,379 + PGA1_262p00450 0.14 -2.6
54,387 - PGA1_262p00450 0.15 -0.4
54,816 + PGA1_262p00450 0.70 -2.0
54,970 + PGA1_262p00450 0.90 -1.0
55,208 + +0.2
55,208 + +0.2
55,232 + PGA1_262p00460 0.14 +0.2
55,232 + PGA1_262p00460 0.14 -0.1
55,232 + PGA1_262p00460 0.14 -0.3
55,240 - PGA1_262p00460 0.15 +1.0
55,263 + PGA1_262p00460 0.21 +1.8

Or see this region's nucleotide sequence