Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3622 and Psest_3623 are separated by 84 nucleotides Psest_3623 and Psest_3624 are separated by 26 nucleotides Psest_3624 and Psest_3625 are separated by 25 nucleotides Psest_3625 and Psest_3626 are separated by 141 nucleotides Psest_3626 and Psest_3627 are separated by 25 nucleotides
Psest_3622: Psest_3622 - translation elongation factor TU, at 3,786,409 to 3,787,602
_3622
Psest_3623: Psest_3623 - tRNA_Thr_GGT, at 3,787,687 to 3,787,762
_3623
Psest_3624: Psest_3624 - tRNA_Gly_TCC, at 3,787,789 to 3,787,862
_3624
Psest_3625: Psest_3625 - tRNA_Tyr_GTA, at 3,787,888 to 3,787,972
_3625
Psest_3626: Psest_3626 - hypothetical protein, at 3,788,114 to 3,788,791
_3626
Psest_3627: Psest_3627 - pantothenate kinase, type III, at 3,788,817 to 3,789,557
_3627
Position (kb)
3787
3788 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3787.647 kb on + strand at 3787.663 kb on - strand at 3787.663 kb on - strand at 3787.663 kb on - strand at 3787.667 kb on - strand at 3787.667 kb on - strand at 3787.667 kb on - strand at 3787.671 kb on - strand at 3787.671 kb on - strand at 3787.671 kb on - strand at 3787.671 kb on - strand at 3787.671 kb on - strand at 3787.671 kb on - strand at 3787.877 kb on - strand at 3787.877 kb on - strand at 3788.107 kb on - strand at 3788.107 kb on - strand at 3788.116 kb on - strand at 3788.219 kb on - strand, within Psest_3626 at 3788.283 kb on + strand, within Psest_3626 at 3788.385 kb on + strand, within Psest_3626 at 3788.385 kb on + strand, within Psest_3626 at 3788.385 kb on + strand, within Psest_3626 at 3788.386 kb on - strand, within Psest_3626 at 3788.386 kb on - strand, within Psest_3626 at 3788.386 kb on - strand, within Psest_3626 at 3788.386 kb on - strand, within Psest_3626 at 3788.386 kb on - strand, within Psest_3626 at 3788.386 kb on - strand, within Psest_3626 at 3788.389 kb on + strand, within Psest_3626 at 3788.393 kb on + strand, within Psest_3626 at 3788.394 kb on - strand, within Psest_3626 at 3788.394 kb on - strand, within Psest_3626 at 3788.394 kb on - strand, within Psest_3626 at 3788.394 kb on - strand, within Psest_3626 at 3788.394 kb on - strand, within Psest_3626 at 3788.394 kb on - strand, within Psest_3626 at 3788.460 kb on + strand, within Psest_3626 at 3788.460 kb on + strand, within Psest_3626 at 3788.461 kb on - strand, within Psest_3626 at 3788.492 kb on + strand, within Psest_3626 at 3788.556 kb on - strand, within Psest_3626 at 3788.685 kb on + strand, within Psest_3626 at 3788.685 kb on + strand, within Psest_3626 at 3788.685 kb on + strand, within Psest_3626 at 3788.686 kb on - strand, within Psest_3626 at 3788.772 kb on - strand at 3788.780 kb on + strand at 3788.805 kb on + strand at 3788.806 kb on - strand at 3788.806 kb on - strand at 3788.806 kb on - strand at 3788.806 kb on - strand at 3788.806 kb on - strand at 3788.810 kb on - strand at 3788.810 kb on - strand at 3788.810 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,787,647 + -2.9 3,787,663 - -0.7 3,787,663 - -0.8 3,787,663 - +0.8 3,787,667 - -0.7 3,787,667 - -0.7 3,787,667 - -0.5 3,787,671 - -0.2 3,787,671 - -0.4 3,787,671 - +0.7 3,787,671 - -0.6 3,787,671 - +0.1 3,787,671 - +0.6 3,787,877 - -0.2 3,787,877 - -0.5 3,788,107 - +0.6 3,788,107 - +0.0 3,788,116 - -0.1 3,788,219 - Psest_3626 0.15 -2.3 3,788,283 + Psest_3626 0.25 -0.6 3,788,385 + Psest_3626 0.40 +0.0 3,788,385 + Psest_3626 0.40 -1.4 3,788,385 + Psest_3626 0.40 -0.1 3,788,386 - Psest_3626 0.40 +1.6 3,788,386 - Psest_3626 0.40 -1.7 3,788,386 - Psest_3626 0.40 -0.2 3,788,386 - Psest_3626 0.40 -0.8 3,788,386 - Psest_3626 0.40 -1.3 3,788,386 - Psest_3626 0.40 +0.2 3,788,389 + Psest_3626 0.41 -3.2 3,788,393 + Psest_3626 0.41 -1.5 3,788,394 - Psest_3626 0.41 -1.1 3,788,394 - Psest_3626 0.41 -1.1 3,788,394 - Psest_3626 0.41 +0.2 3,788,394 - Psest_3626 0.41 -1.8 3,788,394 - Psest_3626 0.41 -0.4 3,788,394 - Psest_3626 0.41 -1.0 3,788,460 + Psest_3626 0.51 -0.2 3,788,460 + Psest_3626 0.51 -1.4 3,788,461 - Psest_3626 0.51 +0.7 3,788,492 + Psest_3626 0.56 -0.5 3,788,556 - Psest_3626 0.65 -2.0 3,788,685 + Psest_3626 0.84 -0.6 3,788,685 + Psest_3626 0.84 -1.8 3,788,685 + Psest_3626 0.84 -2.7 3,788,686 - Psest_3626 0.84 -2.5 3,788,772 - -1.8 3,788,780 + -0.6 3,788,805 + -1.3 3,788,806 - +0.4 3,788,806 - -0.9 3,788,806 - -0.1 3,788,806 - +0.3 3,788,806 - +0.6 3,788,810 - -0.2 3,788,810 - +0.4 3,788,810 - -0.0
Or see this region's nucleotide sequence