Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03390 and PGA1_c03400 are separated by 205 nucleotides PGA1_c03400 and PGA1_c03410 are separated by 298 nucleotides
PGA1_c03390: PGA1_c03390 - acetoacetyl-CoA reductase PhaB, at 325,552 to 326,274
_c03390
PGA1_c03400: PGA1_c03400 - acetyl-CoA:acetyl-CoA C-acetyltransferase / acetyl-CoA:propanoyl-CoA 2-C-acetyltransferase (EC 2.3.1.9; EC 2.3.1.16) <small>(from data)</small>, at 326,480 to 327,655
_c03400
PGA1_c03410: PGA1_c03410 - EAL domain-containing protein, at 327,954 to 328,796
_c03410
Position (kb) 326
327
328 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 325.519 kb on + strand at 325.624 kb on - strand at 325.634 kb on - strand, within PGA1_c03390 at 325.634 kb on - strand, within PGA1_c03390 at 325.762 kb on + strand, within PGA1_c03390 at 325.770 kb on - strand, within PGA1_c03390 at 325.791 kb on - strand, within PGA1_c03390 at 325.807 kb on + strand, within PGA1_c03390 at 325.840 kb on + strand, within PGA1_c03390 at 325.843 kb on - strand, within PGA1_c03390 at 325.845 kb on - strand, within PGA1_c03390 at 325.922 kb on - strand, within PGA1_c03390 at 325.922 kb on - strand, within PGA1_c03390 at 325.937 kb on + strand, within PGA1_c03390 at 325.937 kb on + strand, within PGA1_c03390 at 325.945 kb on - strand, within PGA1_c03390 at 325.945 kb on - strand, within PGA1_c03390 at 325.945 kb on - strand, within PGA1_c03390 at 325.945 kb on - strand, within PGA1_c03390 at 325.947 kb on - strand, within PGA1_c03390 at 325.968 kb on - strand, within PGA1_c03390 at 325.988 kb on + strand, within PGA1_c03390 at 326.071 kb on - strand, within PGA1_c03390 at 326.087 kb on + strand, within PGA1_c03390 at 326.094 kb on + strand, within PGA1_c03390 at 326.094 kb on + strand, within PGA1_c03390 at 326.095 kb on - strand, within PGA1_c03390 at 326.191 kb on + strand, within PGA1_c03390 at 326.192 kb on + strand, within PGA1_c03390 at 326.192 kb on + strand, within PGA1_c03390 at 326.192 kb on + strand, within PGA1_c03390 at 326.199 kb on - strand, within PGA1_c03390 at 326.199 kb on - strand, within PGA1_c03390 at 326.200 kb on - strand, within PGA1_c03390 at 326.200 kb on - strand, within PGA1_c03390 at 326.238 kb on + strand at 326.366 kb on + strand at 326.374 kb on - strand at 326.450 kb on - strand at 326.461 kb on - strand at 326.478 kb on + strand at 326.496 kb on - strand at 326.530 kb on + strand at 326.540 kb on + strand at 326.611 kb on - strand, within PGA1_c03400 at 326.675 kb on - strand, within PGA1_c03400 at 326.685 kb on + strand, within PGA1_c03400 at 326.690 kb on + strand, within PGA1_c03400 at 326.690 kb on + strand, within PGA1_c03400 at 326.690 kb on + strand, within PGA1_c03400 at 326.690 kb on + strand, within PGA1_c03400 at 326.690 kb on + strand, within PGA1_c03400 at 326.690 kb on + strand, within PGA1_c03400 at 326.690 kb on + strand, within PGA1_c03400 at 326.690 kb on + strand, within PGA1_c03400 at 326.693 kb on - strand, within PGA1_c03400 at 326.693 kb on - strand, within PGA1_c03400 at 326.693 kb on - strand, within PGA1_c03400 at 326.698 kb on - strand, within PGA1_c03400 at 326.698 kb on - strand, within PGA1_c03400 at 326.698 kb on - strand, within PGA1_c03400 at 326.698 kb on - strand, within PGA1_c03400 at 326.698 kb on - strand, within PGA1_c03400 at 326.698 kb on - strand, within PGA1_c03400 at 326.698 kb on - strand, within PGA1_c03400 at 326.698 kb on - strand, within PGA1_c03400 at 326.698 kb on - strand, within PGA1_c03400 at 326.698 kb on - strand, within PGA1_c03400 at 326.698 kb on - strand, within PGA1_c03400 at 326.759 kb on - strand, within PGA1_c03400 at 326.763 kb on + strand, within PGA1_c03400 at 326.779 kb on + strand, within PGA1_c03400 at 326.788 kb on - strand, within PGA1_c03400 at 326.806 kb on + strand, within PGA1_c03400 at 326.843 kb on - strand, within PGA1_c03400 at 326.848 kb on + strand, within PGA1_c03400 at 326.856 kb on - strand, within PGA1_c03400 at 326.872 kb on + strand, within PGA1_c03400 at 326.882 kb on + strand, within PGA1_c03400 at 326.888 kb on - strand, within PGA1_c03400 at 326.898 kb on - strand, within PGA1_c03400 at 326.944 kb on - strand, within PGA1_c03400 at 327.026 kb on + strand, within PGA1_c03400 at 327.034 kb on - strand, within PGA1_c03400 at 327.058 kb on - strand, within PGA1_c03400 at 327.058 kb on - strand, within PGA1_c03400 at 327.102 kb on + strand, within PGA1_c03400 at 327.102 kb on + strand, within PGA1_c03400 at 327.147 kb on - strand, within PGA1_c03400 at 327.178 kb on - strand, within PGA1_c03400 at 327.179 kb on + strand, within PGA1_c03400 at 327.268 kb on - strand, within PGA1_c03400 at 327.278 kb on - strand, within PGA1_c03400 at 327.326 kb on + strand, within PGA1_c03400 at 327.329 kb on - strand, within PGA1_c03400 at 327.334 kb on - strand, within PGA1_c03400 at 327.334 kb on - strand, within PGA1_c03400 at 327.334 kb on - strand, within PGA1_c03400 at 327.382 kb on + strand, within PGA1_c03400 at 327.390 kb on + strand, within PGA1_c03400 at 327.390 kb on - strand, within PGA1_c03400 at 327.390 kb on - strand, within PGA1_c03400 at 327.400 kb on + strand, within PGA1_c03400 at 327.407 kb on + strand, within PGA1_c03400 at 327.431 kb on - strand, within PGA1_c03400 at 327.438 kb on + strand, within PGA1_c03400 at 327.443 kb on + strand, within PGA1_c03400 at 327.463 kb on + strand, within PGA1_c03400 at 327.483 kb on - strand, within PGA1_c03400 at 327.547 kb on - strand at 327.557 kb on - strand at 327.671 kb on + strand at 327.679 kb on - strand at 327.679 kb on - strand at 327.701 kb on - strand at 327.703 kb on + strand at 327.711 kb on - strand at 327.711 kb on - strand at 327.755 kb on + strand at 327.767 kb on + strand at 327.767 kb on - strand at 327.774 kb on + strand at 327.791 kb on + strand at 327.796 kb on + strand at 327.799 kb on - strand at 327.801 kb on + strand at 327.801 kb on + strand at 327.801 kb on + strand at 327.801 kb on + strand at 327.801 kb on + strand at 327.801 kb on + strand at 327.801 kb on + strand at 327.801 kb on + strand at 327.801 kb on + strand at 327.809 kb on - strand at 327.809 kb on - strand at 327.809 kb on - strand at 327.809 kb on - strand at 327.844 kb on - strand at 327.848 kb on + strand at 327.854 kb on - strand at 327.881 kb on + strand at 327.881 kb on + strand at 327.881 kb on + strand at 327.881 kb on + strand at 327.881 kb on + strand at 327.881 kb on + strand at 327.881 kb on + strand at 327.881 kb on + strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.889 kb on - strand at 327.891 kb on + strand at 327.900 kb on - strand at 327.921 kb on - strand at 327.940 kb on + strand at 327.940 kb on - strand at 327.942 kb on + strand at 327.943 kb on - strand at 327.950 kb on - strand at 327.958 kb on - strand at 327.960 kb on - strand at 327.961 kb on + strand at 327.991 kb on - strand at 328.002 kb on + strand at 328.010 kb on - strand at 328.010 kb on - strand at 328.010 kb on - strand at 328.010 kb on - strand at 328.012 kb on + strand at 328.026 kb on + strand at 328.034 kb on - strand at 328.070 kb on + strand, within PGA1_c03410 at 328.316 kb on + strand, within PGA1_c03410 at 328.321 kb on + strand, within PGA1_c03410 at 328.321 kb on + strand, within PGA1_c03410 at 328.324 kb on - strand, within PGA1_c03410 at 328.347 kb on + strand, within PGA1_c03410 at 328.350 kb on - strand, within PGA1_c03410 at 328.350 kb on - strand, within PGA1_c03410 at 328.441 kb on + strand, within PGA1_c03410 at 328.453 kb on - strand, within PGA1_c03410 at 328.463 kb on + strand, within PGA1_c03410 at 328.502 kb on + strand, within PGA1_c03410 at 328.504 kb on - strand, within PGA1_c03410 at 328.507 kb on + strand, within PGA1_c03410 at 328.517 kb on + strand, within PGA1_c03410 at 328.599 kb on + strand, within PGA1_c03410 at 328.614 kb on - strand, within PGA1_c03410 at 328.616 kb on + strand, within PGA1_c03410 at 328.633 kb on + strand, within PGA1_c03410
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 325,519 + +0.7 325,624 - +0.3 325,634 - PGA1_c03390 0.11 +0.8 325,634 - PGA1_c03390 0.11 +1.2 325,762 + PGA1_c03390 0.29 +1.8 325,770 - PGA1_c03390 0.30 +1.5 325,791 - PGA1_c03390 0.33 +1.3 325,807 + PGA1_c03390 0.35 +1.6 325,840 + PGA1_c03390 0.40 -0.2 325,843 - PGA1_c03390 0.40 +1.8 325,845 - PGA1_c03390 0.41 +1.6 325,922 - PGA1_c03390 0.51 +1.2 325,922 - PGA1_c03390 0.51 +1.8 325,937 + PGA1_c03390 0.53 +1.6 325,937 + PGA1_c03390 0.53 +1.5 325,945 - PGA1_c03390 0.54 +1.9 325,945 - PGA1_c03390 0.54 +0.6 325,945 - PGA1_c03390 0.54 +0.9 325,945 - PGA1_c03390 0.54 +1.4 325,947 - PGA1_c03390 0.55 +1.6 325,968 - PGA1_c03390 0.58 +2.6 325,988 + PGA1_c03390 0.60 +2.7 326,071 - PGA1_c03390 0.72 +1.1 326,087 + PGA1_c03390 0.74 +0.6 326,094 + PGA1_c03390 0.75 +1.3 326,094 + PGA1_c03390 0.75 +0.7 326,095 - PGA1_c03390 0.75 +1.3 326,191 + PGA1_c03390 0.88 +1.6 326,192 + PGA1_c03390 0.89 +1.0 326,192 + PGA1_c03390 0.89 +1.5 326,192 + PGA1_c03390 0.89 +2.2 326,199 - PGA1_c03390 0.89 -0.0 326,199 - PGA1_c03390 0.89 +1.4 326,200 - PGA1_c03390 0.90 +1.6 326,200 - PGA1_c03390 0.90 +0.6 326,238 + +1.0 326,366 + -0.7 326,374 - -0.0 326,450 - +0.7 326,461 - -0.1 326,478 + +1.0 326,496 - +1.0 326,530 + +0.9 326,540 + +0.5 326,611 - PGA1_c03400 0.11 +0.5 326,675 - PGA1_c03400 0.17 -0.6 326,685 + PGA1_c03400 0.17 -0.4 326,690 + PGA1_c03400 0.18 +0.2 326,690 + PGA1_c03400 0.18 +0.8 326,690 + PGA1_c03400 0.18 +1.1 326,690 + PGA1_c03400 0.18 +1.4 326,690 + PGA1_c03400 0.18 +1.1 326,690 + PGA1_c03400 0.18 +0.8 326,690 + PGA1_c03400 0.18 +0.3 326,690 + PGA1_c03400 0.18 +0.0 326,693 - PGA1_c03400 0.18 +1.0 326,693 - PGA1_c03400 0.18 +0.8 326,693 - PGA1_c03400 0.18 +0.1 326,698 - PGA1_c03400 0.19 +0.1 326,698 - PGA1_c03400 0.19 -0.7 326,698 - PGA1_c03400 0.19 +0.9 326,698 - PGA1_c03400 0.19 +0.6 326,698 - PGA1_c03400 0.19 +1.2 326,698 - PGA1_c03400 0.19 +0.6 326,698 - PGA1_c03400 0.19 +0.9 326,698 - PGA1_c03400 0.19 -0.6 326,698 - PGA1_c03400 0.19 +0.3 326,698 - PGA1_c03400 0.19 -0.4 326,698 - PGA1_c03400 0.19 +1.0 326,759 - PGA1_c03400 0.24 +1.4 326,763 + PGA1_c03400 0.24 +0.7 326,779 + PGA1_c03400 0.25 +1.2 326,788 - PGA1_c03400 0.26 +1.6 326,806 + PGA1_c03400 0.28 +1.1 326,843 - PGA1_c03400 0.31 +1.6 326,848 + PGA1_c03400 0.31 +0.8 326,856 - PGA1_c03400 0.32 +3.1 326,872 + PGA1_c03400 0.33 +1.2 326,882 + PGA1_c03400 0.34 +0.1 326,888 - PGA1_c03400 0.35 +0.5 326,898 - PGA1_c03400 0.36 +1.3 326,944 - PGA1_c03400 0.39 +1.1 327,026 + PGA1_c03400 0.46 -0.3 327,034 - PGA1_c03400 0.47 +0.0 327,058 - PGA1_c03400 0.49 +1.1 327,058 - PGA1_c03400 0.49 -0.1 327,102 + PGA1_c03400 0.53 +1.4 327,102 + PGA1_c03400 0.53 +0.9 327,147 - PGA1_c03400 0.57 +1.0 327,178 - PGA1_c03400 0.59 +0.9 327,179 + PGA1_c03400 0.59 +0.4 327,268 - PGA1_c03400 0.67 +0.2 327,278 - PGA1_c03400 0.68 +1.1 327,326 + PGA1_c03400 0.72 +1.3 327,329 - PGA1_c03400 0.72 +0.2 327,334 - PGA1_c03400 0.73 +0.4 327,334 - PGA1_c03400 0.73 +0.7 327,334 - PGA1_c03400 0.73 +0.2 327,382 + PGA1_c03400 0.77 +0.9 327,390 + PGA1_c03400 0.77 +0.4 327,390 - PGA1_c03400 0.77 +0.9 327,390 - PGA1_c03400 0.77 +0.8 327,400 + PGA1_c03400 0.78 +1.2 327,407 + PGA1_c03400 0.79 +0.6 327,431 - PGA1_c03400 0.81 +0.8 327,438 + PGA1_c03400 0.81 +1.3 327,443 + PGA1_c03400 0.82 +0.5 327,463 + PGA1_c03400 0.84 +1.5 327,483 - PGA1_c03400 0.85 +0.8 327,547 - +0.4 327,557 - +0.1 327,671 + +0.3 327,679 - +0.7 327,679 - +0.3 327,701 - +1.7 327,703 + +0.4 327,711 - +0.5 327,711 - +1.3 327,755 + +1.0 327,767 + +1.5 327,767 - +0.6 327,774 + +0.5 327,791 + +0.7 327,796 + +1.1 327,799 - +0.1 327,801 + +0.6 327,801 + +0.9 327,801 + +0.5 327,801 + +1.1 327,801 + +0.6 327,801 + -0.9 327,801 + +0.3 327,801 + +0.5 327,801 + -0.6 327,809 - +1.3 327,809 - +0.2 327,809 - +0.1 327,809 - -0.4 327,844 - +1.7 327,848 + +0.5 327,854 - +0.5 327,881 + -2.5 327,881 + -0.7 327,881 + +0.0 327,881 + +0.2 327,881 + -2.3 327,881 + +0.1 327,881 + +0.4 327,881 + +0.2 327,889 - -0.2 327,889 - +0.3 327,889 - +0.3 327,889 - -0.2 327,889 - -1.0 327,889 - +0.2 327,889 - +1.1 327,889 - -0.5 327,889 - -0.1 327,889 - +0.2 327,889 - -0.9 327,889 - -0.1 327,889 - +0.4 327,889 - +0.4 327,889 - -0.6 327,889 - +0.2 327,889 - -0.1 327,891 + +0.1 327,900 - -0.4 327,921 - +0.7 327,940 + +0.6 327,940 - -0.4 327,942 + -0.8 327,943 - +0.2 327,950 - -0.2 327,958 - +0.6 327,960 - -0.1 327,961 + +0.3 327,991 - -0.7 328,002 + -0.2 328,010 - +0.2 328,010 - -1.8 328,010 - -0.7 328,010 - +0.3 328,012 + -0.6 328,026 + -0.1 328,034 - -0.7 328,070 + PGA1_c03410 0.14 -0.2 328,316 + PGA1_c03410 0.43 +0.0 328,321 + PGA1_c03410 0.44 -0.3 328,321 + PGA1_c03410 0.44 +0.3 328,324 - PGA1_c03410 0.44 -0.6 328,347 + PGA1_c03410 0.47 -0.6 328,350 - PGA1_c03410 0.47 +0.8 328,350 - PGA1_c03410 0.47 +0.0 328,441 + PGA1_c03410 0.58 -1.0 328,453 - PGA1_c03410 0.59 -0.5 328,463 + PGA1_c03410 0.60 -0.4 328,502 + PGA1_c03410 0.65 +1.0 328,504 - PGA1_c03410 0.65 +1.1 328,507 + PGA1_c03410 0.66 -0.4 328,517 + PGA1_c03410 0.67 -0.8 328,599 + PGA1_c03410 0.77 -0.5 328,614 - PGA1_c03410 0.78 -0.1 328,616 + PGA1_c03410 0.79 -0.4 328,633 + PGA1_c03410 0.81 -1.5
Or see this region's nucleotide sequence