Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2522 and Psest_2523 are separated by 48 nucleotides Psest_2523 and Psest_2524 are separated by 63 nucleotides Psest_2524 and Psest_2525 are separated by 13 nucleotides Psest_2525 and Psest_2526 are separated by 92 nucleotides
Psest_2522: Psest_2522 - PAS domain S-box, at 2,702,083 to 2,703,651
_2522
Psest_2523: Psest_2523 - Predicted hydrolase of the alpha/beta-hydrolase fold, at 2,703,700 to 2,704,392
_2523
Psest_2524: Psest_2524 - cytochrome c oxidase, cbb3-type, subunit I, at 2,704,456 to 2,705,880
_2524
Psest_2525: Psest_2525 - cytochrome c oxidase, cbb3-type, subunit II, at 2,705,894 to 2,706,505
_2525
Psest_2526: Psest_2526 - cytochrome c oxidase, cbb3-type, subunit III, at 2,706,598 to 2,707,533
_2526
Position (kb)
2704
2705
2706 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2703.622 kb on + strand at 2703.852 kb on - strand, within Psest_2523 at 2703.968 kb on + strand, within Psest_2523 at 2703.969 kb on - strand, within Psest_2523 at 2703.969 kb on - strand, within Psest_2523 at 2704.178 kb on + strand, within Psest_2523 at 2704.178 kb on + strand, within Psest_2523 at 2704.178 kb on + strand, within Psest_2523 at 2704.178 kb on + strand, within Psest_2523 at 2704.178 kb on + strand, within Psest_2523 at 2704.178 kb on + strand, within Psest_2523 at 2704.408 kb on + strand at 2704.409 kb on - strand at 2704.409 kb on - strand at 2704.409 kb on - strand at 2704.411 kb on + strand at 2704.453 kb on + strand at 2704.453 kb on + strand at 2704.453 kb on + strand at 2704.453 kb on + strand at 2704.454 kb on - strand at 2704.480 kb on + strand at 2704.486 kb on + strand at 2704.486 kb on + strand at 2704.486 kb on + strand at 2704.486 kb on + strand at 2704.486 kb on + strand at 2704.486 kb on + strand at 2704.487 kb on - strand at 2704.487 kb on - strand at 2704.487 kb on - strand at 2704.487 kb on - strand at 2704.487 kb on - strand at 2704.622 kb on + strand, within Psest_2524 at 2704.623 kb on - strand, within Psest_2524 at 2704.690 kb on + strand, within Psest_2524 at 2704.690 kb on + strand, within Psest_2524 at 2704.927 kb on + strand, within Psest_2524 at 2704.927 kb on + strand, within Psest_2524 at 2704.927 kb on + strand, within Psest_2524 at 2704.927 kb on + strand, within Psest_2524 at 2704.928 kb on - strand, within Psest_2524 at 2704.928 kb on - strand, within Psest_2524 at 2705.024 kb on - strand, within Psest_2524 at 2705.122 kb on + strand, within Psest_2524 at 2705.122 kb on + strand, within Psest_2524 at 2705.123 kb on - strand, within Psest_2524 at 2705.123 kb on - strand, within Psest_2524 at 2705.123 kb on - strand, within Psest_2524 at 2705.123 kb on - strand, within Psest_2524 at 2705.123 kb on - strand, within Psest_2524 at 2705.123 kb on - strand, within Psest_2524 at 2705.123 kb on - strand, within Psest_2524 at 2705.123 kb on - strand, within Psest_2524 at 2705.123 kb on - strand, within Psest_2524 at 2705.123 kb on - strand, within Psest_2524 at 2705.125 kb on + strand, within Psest_2524 at 2705.125 kb on + strand, within Psest_2524 at 2705.126 kb on - strand, within Psest_2524 at 2705.159 kb on - strand, within Psest_2524 at 2705.165 kb on - strand, within Psest_2524 at 2705.207 kb on - strand, within Psest_2524 at 2705.237 kb on - strand, within Psest_2524 at 2705.492 kb on + strand, within Psest_2524 at 2705.492 kb on + strand, within Psest_2524 at 2705.543 kb on - strand, within Psest_2524 at 2705.638 kb on + strand, within Psest_2524 at 2705.638 kb on + strand, within Psest_2524 at 2705.639 kb on - strand, within Psest_2524 at 2705.812 kb on + strand at 2705.813 kb on - strand at 2705.887 kb on + strand at 2705.887 kb on + strand at 2705.888 kb on - strand at 2705.891 kb on + strand at 2706.071 kb on + strand, within Psest_2525 at 2706.071 kb on + strand, within Psest_2525 at 2706.071 kb on + strand, within Psest_2525 at 2706.149 kb on + strand, within Psest_2525 at 2706.149 kb on + strand, within Psest_2525 at 2706.149 kb on + strand, within Psest_2525 at 2706.149 kb on + strand, within Psest_2525 at 2706.149 kb on + strand, within Psest_2525 at 2706.206 kb on - strand, within Psest_2525 at 2706.465 kb on - strand at 2706.592 kb on + strand at 2706.592 kb on + strand at 2706.593 kb on - strand at 2706.619 kb on + strand at 2706.620 kb on - strand at 2706.620 kb on - strand at 2706.745 kb on + strand, within Psest_2526 at 2706.745 kb on + strand, within Psest_2526
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,703,622 + +0.0 2,703,852 - Psest_2523 0.22 -0.4 2,703,968 + Psest_2523 0.39 +0.1 2,703,969 - Psest_2523 0.39 +0.1 2,703,969 - Psest_2523 0.39 -0.3 2,704,178 + Psest_2523 0.69 -0.8 2,704,178 + Psest_2523 0.69 -0.7 2,704,178 + Psest_2523 0.69 -0.1 2,704,178 + Psest_2523 0.69 +0.7 2,704,178 + Psest_2523 0.69 -1.7 2,704,178 + Psest_2523 0.69 -1.0 2,704,408 + -0.3 2,704,409 - -0.7 2,704,409 - +0.4 2,704,409 - -2.0 2,704,411 + +0.0 2,704,453 + -0.8 2,704,453 + -0.3 2,704,453 + +3.0 2,704,453 + -0.5 2,704,454 - -0.3 2,704,480 + -0.4 2,704,486 + -0.4 2,704,486 + -1.2 2,704,486 + -0.1 2,704,486 + -0.3 2,704,486 + -1.3 2,704,486 + +1.4 2,704,487 - -0.4 2,704,487 - -0.2 2,704,487 - -0.7 2,704,487 - -1.1 2,704,487 - +1.2 2,704,622 + Psest_2524 0.12 -0.1 2,704,623 - Psest_2524 0.12 -1.2 2,704,690 + Psest_2524 0.16 +0.1 2,704,690 + Psest_2524 0.16 -0.7 2,704,927 + Psest_2524 0.33 -1.2 2,704,927 + Psest_2524 0.33 -0.9 2,704,927 + Psest_2524 0.33 -0.4 2,704,927 + Psest_2524 0.33 +0.1 2,704,928 - Psest_2524 0.33 -0.6 2,704,928 - Psest_2524 0.33 +0.5 2,705,024 - Psest_2524 0.40 +0.3 2,705,122 + Psest_2524 0.47 -0.1 2,705,122 + Psest_2524 0.47 -0.8 2,705,123 - Psest_2524 0.47 +0.1 2,705,123 - Psest_2524 0.47 -0.3 2,705,123 - Psest_2524 0.47 +0.2 2,705,123 - Psest_2524 0.47 -1.7 2,705,123 - Psest_2524 0.47 -0.7 2,705,123 - Psest_2524 0.47 -1.2 2,705,123 - Psest_2524 0.47 -1.1 2,705,123 - Psest_2524 0.47 -0.7 2,705,123 - Psest_2524 0.47 -0.0 2,705,123 - Psest_2524 0.47 +0.1 2,705,125 + Psest_2524 0.47 -1.2 2,705,125 + Psest_2524 0.47 -0.2 2,705,126 - Psest_2524 0.47 -0.7 2,705,159 - Psest_2524 0.49 -0.6 2,705,165 - Psest_2524 0.50 -0.7 2,705,207 - Psest_2524 0.53 -1.0 2,705,237 - Psest_2524 0.55 -0.5 2,705,492 + Psest_2524 0.73 -1.9 2,705,492 + Psest_2524 0.73 -0.2 2,705,543 - Psest_2524 0.76 -0.3 2,705,638 + Psest_2524 0.83 -0.0 2,705,638 + Psest_2524 0.83 -1.1 2,705,639 - Psest_2524 0.83 -3.0 2,705,812 + -1.3 2,705,813 - -0.1 2,705,887 + -0.6 2,705,887 + -0.3 2,705,888 - +0.3 2,705,891 + -1.3 2,706,071 + Psest_2525 0.29 -0.1 2,706,071 + Psest_2525 0.29 -0.3 2,706,071 + Psest_2525 0.29 -0.5 2,706,149 + Psest_2525 0.42 -1.3 2,706,149 + Psest_2525 0.42 -0.3 2,706,149 + Psest_2525 0.42 +1.7 2,706,149 + Psest_2525 0.42 -0.5 2,706,149 + Psest_2525 0.42 -0.7 2,706,206 - Psest_2525 0.51 -0.3 2,706,465 - +0.3 2,706,592 + -0.7 2,706,592 + -0.3 2,706,593 - -0.7 2,706,619 + -0.3 2,706,620 - -0.4 2,706,620 - +1.8 2,706,745 + Psest_2526 0.16 +0.6 2,706,745 + Psest_2526 0.16 -0.2
Or see this region's nucleotide sequence