Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02510 and PGA1_c02520 are separated by 330 nucleotides PGA1_c02520 and PGA1_c02530 overlap by 4 nucleotides PGA1_c02530 and PGA1_c02540 are separated by 301 nucleotides
PGA1_c02510: PGA1_c02510 - S-(hydroxymethyl)glutathione dehydrogenase FrmA, at 234,618 to 235,733
_c02510
PGA1_c02520: PGA1_c02520 - copper-transporting P-type ATPase ActP, at 236,064 to 238,580
_c02520
PGA1_c02530: PGA1_c02530 - HTH-type transcriptional regulator, at 238,577 to 238,981
_c02530
PGA1_c02540: PGA1_c02540 - Uncharacterized conserved protein, at 239,283 to 240,119
_c02540
Position (kb) 236
237
238
239 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 235.066 kb on + strand, within PGA1_c02510 at 235.074 kb on - strand, within PGA1_c02510 at 235.091 kb on + strand, within PGA1_c02510 at 235.091 kb on + strand, within PGA1_c02510 at 235.110 kb on - strand, within PGA1_c02510 at 235.186 kb on + strand, within PGA1_c02510 at 235.188 kb on + strand, within PGA1_c02510 at 235.188 kb on + strand, within PGA1_c02510 at 235.231 kb on + strand, within PGA1_c02510 at 235.242 kb on + strand, within PGA1_c02510 at 235.351 kb on + strand, within PGA1_c02510 at 235.353 kb on + strand, within PGA1_c02510 at 235.369 kb on - strand, within PGA1_c02510 at 235.369 kb on - strand, within PGA1_c02510 at 235.369 kb on - strand, within PGA1_c02510 at 235.369 kb on - strand, within PGA1_c02510 at 235.382 kb on + strand, within PGA1_c02510 at 235.390 kb on - strand, within PGA1_c02510 at 235.493 kb on + strand, within PGA1_c02510 at 235.493 kb on + strand, within PGA1_c02510 at 235.493 kb on + strand, within PGA1_c02510 at 235.501 kb on - strand, within PGA1_c02510 at 235.501 kb on - strand, within PGA1_c02510 at 235.501 kb on - strand, within PGA1_c02510 at 235.501 kb on - strand, within PGA1_c02510 at 235.501 kb on - strand, within PGA1_c02510 at 235.501 kb on - strand, within PGA1_c02510 at 235.501 kb on - strand, within PGA1_c02510 at 235.501 kb on - strand, within PGA1_c02510 at 235.501 kb on - strand, within PGA1_c02510 at 235.501 kb on - strand, within PGA1_c02510 at 235.511 kb on - strand, within PGA1_c02510 at 235.661 kb on + strand at 235.668 kb on - strand at 235.698 kb on - strand at 235.707 kb on + strand at 235.707 kb on + strand at 235.811 kb on + strand at 235.818 kb on + strand at 235.932 kb on + strand at 235.994 kb on - strand at 236.026 kb on + strand at 236.034 kb on - strand at 236.159 kb on + strand at 236.300 kb on + strand at 236.308 kb on - strand at 236.315 kb on - strand at 236.315 kb on - strand at 236.315 kb on - strand at 236.355 kb on - strand, within PGA1_c02520 at 236.379 kb on + strand, within PGA1_c02520 at 236.379 kb on + strand, within PGA1_c02520 at 236.424 kb on + strand, within PGA1_c02520 at 236.444 kb on - strand, within PGA1_c02520 at 236.447 kb on + strand, within PGA1_c02520 at 236.577 kb on + strand, within PGA1_c02520 at 236.585 kb on - strand, within PGA1_c02520 at 236.600 kb on + strand, within PGA1_c02520 at 236.664 kb on + strand, within PGA1_c02520 at 236.706 kb on - strand, within PGA1_c02520 at 236.716 kb on - strand, within PGA1_c02520 at 236.716 kb on - strand, within PGA1_c02520 at 236.718 kb on + strand, within PGA1_c02520 at 236.721 kb on - strand, within PGA1_c02520 at 236.746 kb on - strand, within PGA1_c02520 at 236.753 kb on + strand, within PGA1_c02520 at 236.753 kb on + strand, within PGA1_c02520 at 236.759 kb on - strand, within PGA1_c02520 at 236.789 kb on + strand, within PGA1_c02520 at 236.799 kb on + strand, within PGA1_c02520 at 236.805 kb on + strand, within PGA1_c02520 at 236.813 kb on - strand, within PGA1_c02520 at 236.826 kb on - strand, within PGA1_c02520 at 236.920 kb on + strand, within PGA1_c02520 at 236.928 kb on - strand, within PGA1_c02520 at 236.940 kb on - strand, within PGA1_c02520 at 236.981 kb on + strand, within PGA1_c02520 at 236.989 kb on - strand, within PGA1_c02520 at 237.000 kb on + strand, within PGA1_c02520 at 237.008 kb on + strand, within PGA1_c02520 at 237.016 kb on - strand, within PGA1_c02520 at 237.080 kb on - strand, within PGA1_c02520 at 237.084 kb on + strand, within PGA1_c02520 at 237.094 kb on + strand, within PGA1_c02520 at 237.099 kb on + strand, within PGA1_c02520 at 237.139 kb on + strand, within PGA1_c02520 at 237.236 kb on - strand, within PGA1_c02520 at 237.281 kb on + strand, within PGA1_c02520 at 237.289 kb on - strand, within PGA1_c02520 at 237.394 kb on + strand, within PGA1_c02520 at 237.407 kb on - strand, within PGA1_c02520 at 237.422 kb on + strand, within PGA1_c02520 at 237.422 kb on + strand, within PGA1_c02520 at 237.450 kb on + strand, within PGA1_c02520 at 237.455 kb on + strand, within PGA1_c02520 at 237.456 kb on - strand, within PGA1_c02520 at 237.458 kb on - strand, within PGA1_c02520 at 237.516 kb on - strand, within PGA1_c02520 at 237.590 kb on + strand, within PGA1_c02520 at 237.592 kb on - strand, within PGA1_c02520 at 237.592 kb on - strand, within PGA1_c02520 at 237.603 kb on + strand, within PGA1_c02520 at 237.619 kb on + strand, within PGA1_c02520 at 237.627 kb on + strand, within PGA1_c02520 at 237.627 kb on + strand, within PGA1_c02520 at 237.627 kb on + strand, within PGA1_c02520 at 237.637 kb on + strand, within PGA1_c02520 at 237.645 kb on - strand, within PGA1_c02520 at 237.645 kb on - strand, within PGA1_c02520 at 237.716 kb on + strand, within PGA1_c02520 at 237.724 kb on - strand, within PGA1_c02520 at 237.761 kb on + strand, within PGA1_c02520 at 237.785 kb on - strand, within PGA1_c02520 at 237.786 kb on - strand, within PGA1_c02520 at 237.859 kb on - strand, within PGA1_c02520 at 238.020 kb on - strand, within PGA1_c02520 at 238.020 kb on - strand, within PGA1_c02520 at 238.071 kb on + strand, within PGA1_c02520 at 238.071 kb on + strand, within PGA1_c02520 at 238.111 kb on + strand, within PGA1_c02520 at 238.126 kb on + strand, within PGA1_c02520 at 238.134 kb on - strand, within PGA1_c02520 at 238.134 kb on - strand, within PGA1_c02520 at 238.134 kb on - strand, within PGA1_c02520 at 238.155 kb on + strand, within PGA1_c02520 at 238.155 kb on + strand, within PGA1_c02520 at 238.163 kb on - strand, within PGA1_c02520 at 238.169 kb on + strand, within PGA1_c02520 at 238.186 kb on - strand, within PGA1_c02520 at 238.193 kb on + strand, within PGA1_c02520 at 238.239 kb on + strand, within PGA1_c02520 at 238.239 kb on + strand, within PGA1_c02520 at 238.266 kb on + strand, within PGA1_c02520 at 238.271 kb on + strand, within PGA1_c02520 at 238.271 kb on + strand, within PGA1_c02520 at 238.279 kb on - strand, within PGA1_c02520 at 238.284 kb on - strand, within PGA1_c02520 at 238.350 kb on + strand at 238.401 kb on + strand at 238.407 kb on - strand at 238.450 kb on - strand at 238.462 kb on + strand at 238.495 kb on + strand at 238.495 kb on + strand at 238.495 kb on + strand at 238.500 kb on - strand at 238.531 kb on - strand at 238.531 kb on - strand at 238.562 kb on - strand at 238.574 kb on + strand at 238.582 kb on + strand at 238.592 kb on - strand at 238.621 kb on + strand, within PGA1_c02530 at 238.621 kb on + strand, within PGA1_c02530 at 238.623 kb on - strand, within PGA1_c02530 at 238.646 kb on + strand, within PGA1_c02530 at 238.649 kb on - strand, within PGA1_c02530 at 238.650 kb on - strand, within PGA1_c02530 at 238.651 kb on + strand, within PGA1_c02530 at 238.651 kb on + strand, within PGA1_c02530 at 238.651 kb on + strand, within PGA1_c02530 at 238.696 kb on + strand, within PGA1_c02530 at 238.703 kb on - strand, within PGA1_c02530 at 238.708 kb on - strand, within PGA1_c02530 at 238.732 kb on - strand, within PGA1_c02530 at 238.803 kb on + strand, within PGA1_c02530 at 238.895 kb on + strand, within PGA1_c02530 at 238.896 kb on - strand, within PGA1_c02530 at 238.903 kb on - strand, within PGA1_c02530 at 238.913 kb on + strand, within PGA1_c02530 at 238.913 kb on + strand, within PGA1_c02530 at 238.913 kb on + strand, within PGA1_c02530 at 238.913 kb on + strand, within PGA1_c02530 at 238.913 kb on + strand, within PGA1_c02530 at 238.921 kb on - strand, within PGA1_c02530 at 238.921 kb on - strand, within PGA1_c02530 at 238.922 kb on + strand, within PGA1_c02530 at 238.932 kb on + strand, within PGA1_c02530 at 238.932 kb on + strand, within PGA1_c02530 at 238.940 kb on - strand, within PGA1_c02530 at 239.033 kb on - strand at 239.033 kb on - strand at 239.033 kb on - strand at 239.033 kb on - strand at 239.053 kb on + strand at 239.071 kb on + strand at 239.071 kb on + strand at 239.073 kb on + strand at 239.079 kb on - strand at 239.079 kb on - strand at 239.079 kb on - strand at 239.080 kb on - strand at 239.081 kb on - strand at 239.217 kb on - strand at 239.217 kb on - strand at 239.242 kb on - strand at 239.259 kb on - strand at 239.259 kb on - strand at 239.264 kb on - strand at 239.271 kb on - strand at 239.313 kb on + strand at 239.331 kb on + strand at 239.371 kb on - strand, within PGA1_c02540 at 239.371 kb on - strand, within PGA1_c02540 at 239.374 kb on + strand, within PGA1_c02540 at 239.548 kb on + strand, within PGA1_c02540 at 239.548 kb on + strand, within PGA1_c02540
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 235,066 + PGA1_c02510 0.40 +0.5 235,074 - PGA1_c02510 0.41 +0.5 235,091 + PGA1_c02510 0.42 -0.5 235,091 + PGA1_c02510 0.42 -0.5 235,110 - PGA1_c02510 0.44 +0.8 235,186 + PGA1_c02510 0.51 +0.7 235,188 + PGA1_c02510 0.51 +0.3 235,188 + PGA1_c02510 0.51 -0.5 235,231 + PGA1_c02510 0.55 -0.4 235,242 + PGA1_c02510 0.56 -0.0 235,351 + PGA1_c02510 0.66 -1.4 235,353 + PGA1_c02510 0.66 +1.1 235,369 - PGA1_c02510 0.67 +0.6 235,369 - PGA1_c02510 0.67 -1.0 235,369 - PGA1_c02510 0.67 +0.3 235,369 - PGA1_c02510 0.67 +0.3 235,382 + PGA1_c02510 0.68 -0.5 235,390 - PGA1_c02510 0.69 +0.4 235,493 + PGA1_c02510 0.78 +0.4 235,493 + PGA1_c02510 0.78 -0.0 235,493 + PGA1_c02510 0.78 +1.5 235,501 - PGA1_c02510 0.79 +0.0 235,501 - PGA1_c02510 0.79 -1.3 235,501 - PGA1_c02510 0.79 -0.5 235,501 - PGA1_c02510 0.79 +0.4 235,501 - PGA1_c02510 0.79 -0.3 235,501 - PGA1_c02510 0.79 +0.5 235,501 - PGA1_c02510 0.79 -0.4 235,501 - PGA1_c02510 0.79 -0.1 235,501 - PGA1_c02510 0.79 -0.2 235,501 - PGA1_c02510 0.79 -0.4 235,511 - PGA1_c02510 0.80 -0.6 235,661 + -0.2 235,668 - -0.8 235,698 - +0.0 235,707 + -0.5 235,707 + -0.4 235,811 + -0.2 235,818 + -0.7 235,932 + +0.0 235,994 - +1.4 236,026 + +1.1 236,034 - -0.5 236,159 + +0.3 236,300 + -1.8 236,308 - -2.1 236,315 - -1.2 236,315 - -1.8 236,315 - -1.7 236,355 - PGA1_c02520 0.12 -0.6 236,379 + PGA1_c02520 0.13 -1.6 236,379 + PGA1_c02520 0.13 +0.0 236,424 + PGA1_c02520 0.14 -1.7 236,444 - PGA1_c02520 0.15 -0.5 236,447 + PGA1_c02520 0.15 -0.5 236,577 + PGA1_c02520 0.20 -2.8 236,585 - PGA1_c02520 0.21 -0.8 236,600 + PGA1_c02520 0.21 -1.2 236,664 + PGA1_c02520 0.24 -2.7 236,706 - PGA1_c02520 0.26 -0.2 236,716 - PGA1_c02520 0.26 -1.2 236,716 - PGA1_c02520 0.26 -0.5 236,718 + PGA1_c02520 0.26 -1.5 236,721 - PGA1_c02520 0.26 -0.5 236,746 - PGA1_c02520 0.27 -0.4 236,753 + PGA1_c02520 0.27 -1.3 236,753 + PGA1_c02520 0.27 -1.6 236,759 - PGA1_c02520 0.28 -2.3 236,789 + PGA1_c02520 0.29 -0.1 236,799 + PGA1_c02520 0.29 +0.4 236,805 + PGA1_c02520 0.29 -2.5 236,813 - PGA1_c02520 0.30 -2.4 236,826 - PGA1_c02520 0.30 -2.1 236,920 + PGA1_c02520 0.34 -1.1 236,928 - PGA1_c02520 0.34 -2.1 236,940 - PGA1_c02520 0.35 -1.0 236,981 + PGA1_c02520 0.36 -0.6 236,989 - PGA1_c02520 0.37 -1.2 237,000 + PGA1_c02520 0.37 -1.9 237,008 + PGA1_c02520 0.38 +0.2 237,016 - PGA1_c02520 0.38 -1.3 237,080 - PGA1_c02520 0.40 -0.8 237,084 + PGA1_c02520 0.41 -1.3 237,094 + PGA1_c02520 0.41 -1.3 237,099 + PGA1_c02520 0.41 -1.2 237,139 + PGA1_c02520 0.43 -1.1 237,236 - PGA1_c02520 0.47 -3.0 237,281 + PGA1_c02520 0.48 -1.0 237,289 - PGA1_c02520 0.49 -0.9 237,394 + PGA1_c02520 0.53 -2.1 237,407 - PGA1_c02520 0.53 -1.1 237,422 + PGA1_c02520 0.54 -1.9 237,422 + PGA1_c02520 0.54 -1.3 237,450 + PGA1_c02520 0.55 -1.9 237,455 + PGA1_c02520 0.55 -0.3 237,456 - PGA1_c02520 0.55 -0.9 237,458 - PGA1_c02520 0.55 -0.2 237,516 - PGA1_c02520 0.58 -0.5 237,590 + PGA1_c02520 0.61 -1.8 237,592 - PGA1_c02520 0.61 -1.0 237,592 - PGA1_c02520 0.61 -2.2 237,603 + PGA1_c02520 0.61 -1.8 237,619 + PGA1_c02520 0.62 -0.2 237,627 + PGA1_c02520 0.62 -1.3 237,627 + PGA1_c02520 0.62 -0.5 237,627 + PGA1_c02520 0.62 -1.5 237,637 + PGA1_c02520 0.62 -0.5 237,645 - PGA1_c02520 0.63 -2.1 237,645 - PGA1_c02520 0.63 -1.1 237,716 + PGA1_c02520 0.66 -1.3 237,724 - PGA1_c02520 0.66 -1.5 237,761 + PGA1_c02520 0.67 -1.9 237,785 - PGA1_c02520 0.68 -0.2 237,786 - PGA1_c02520 0.68 -3.5 237,859 - PGA1_c02520 0.71 -1.5 238,020 - PGA1_c02520 0.78 -0.9 238,020 - PGA1_c02520 0.78 +0.5 238,071 + PGA1_c02520 0.80 -1.8 238,071 + PGA1_c02520 0.80 -1.1 238,111 + PGA1_c02520 0.81 -1.6 238,126 + PGA1_c02520 0.82 -1.6 238,134 - PGA1_c02520 0.82 -0.5 238,134 - PGA1_c02520 0.82 -1.0 238,134 - PGA1_c02520 0.82 -1.1 238,155 + PGA1_c02520 0.83 -1.3 238,155 + PGA1_c02520 0.83 +0.1 238,163 - PGA1_c02520 0.83 +0.4 238,169 + PGA1_c02520 0.84 -0.3 238,186 - PGA1_c02520 0.84 -0.4 238,193 + PGA1_c02520 0.85 -0.7 238,239 + PGA1_c02520 0.86 -1.1 238,239 + PGA1_c02520 0.86 -0.7 238,266 + PGA1_c02520 0.87 -2.5 238,271 + PGA1_c02520 0.88 -1.3 238,271 + PGA1_c02520 0.88 -0.6 238,279 - PGA1_c02520 0.88 -1.8 238,284 - PGA1_c02520 0.88 -1.2 238,350 + -0.3 238,401 + -0.1 238,407 - -0.4 238,450 - -0.8 238,462 + +0.5 238,495 + +0.7 238,495 + +0.2 238,495 + -0.2 238,500 - +0.0 238,531 - +1.1 238,531 - -0.1 238,562 - +0.3 238,574 + -0.1 238,582 + -0.2 238,592 - -0.5 238,621 + PGA1_c02530 0.11 -0.3 238,621 + PGA1_c02530 0.11 -2.2 238,623 - PGA1_c02530 0.11 -1.2 238,646 + PGA1_c02530 0.17 -1.9 238,649 - PGA1_c02530 0.18 -0.1 238,650 - PGA1_c02530 0.18 +0.2 238,651 + PGA1_c02530 0.18 -1.6 238,651 + PGA1_c02530 0.18 -1.1 238,651 + PGA1_c02530 0.18 -1.4 238,696 + PGA1_c02530 0.29 +0.3 238,703 - PGA1_c02530 0.31 -1.7 238,708 - PGA1_c02530 0.32 -1.4 238,732 - PGA1_c02530 0.38 -1.2 238,803 + PGA1_c02530 0.56 -1.0 238,895 + PGA1_c02530 0.79 -0.9 238,896 - PGA1_c02530 0.79 -1.9 238,903 - PGA1_c02530 0.80 -0.2 238,913 + PGA1_c02530 0.83 +0.2 238,913 + PGA1_c02530 0.83 -0.4 238,913 + PGA1_c02530 0.83 -2.2 238,913 + PGA1_c02530 0.83 -0.5 238,913 + PGA1_c02530 0.83 -2.1 238,921 - PGA1_c02530 0.85 -0.6 238,921 - PGA1_c02530 0.85 -0.7 238,922 + PGA1_c02530 0.85 -0.7 238,932 + PGA1_c02530 0.88 -0.3 238,932 + PGA1_c02530 0.88 -0.3 238,940 - PGA1_c02530 0.90 -0.4 239,033 - +0.6 239,033 - +0.0 239,033 - +0.8 239,033 - -2.6 239,053 + +0.4 239,071 + +0.4 239,071 + +0.2 239,073 + -0.6 239,079 - -0.5 239,079 - -0.5 239,079 - -0.9 239,080 - -0.1 239,081 - +0.7 239,217 - -0.8 239,217 - +1.4 239,242 - +2.2 239,259 - +0.7 239,259 - -0.2 239,264 - +1.5 239,271 - +0.2 239,313 + +0.4 239,331 + -0.9 239,371 - PGA1_c02540 0.11 -0.6 239,371 - PGA1_c02540 0.11 +0.5 239,374 + PGA1_c02540 0.11 +1.5 239,548 + PGA1_c02540 0.32 -0.2 239,548 + PGA1_c02540 0.32 +0.3
Or see this region's nucleotide sequence