Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02440

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c02430 and PGA1_c02440 overlap by 4 nucleotidesPGA1_c02440 and PGA1_c02450 overlap by 4 nucleotides PGA1_c02430: PGA1_c02430 - type I secretion membrane fusion protein, HlyD family, at 219,676 to 220,845 _c02430 PGA1_c02440: PGA1_c02440 - putative ATP-binding/permease fusion ABC transporter, at 220,842 to 223,208 _c02440 PGA1_c02450: PGA1_c02450 - putative outer membrane efflux protein, at 223,205 to 224,524 _c02450 Position (kb) 220 221 222 223 224Strain fitness (log2 ratio) -2 -1 0 1 2at 219.852 kb on - strand, within PGA1_c02430at 219.931 kb on + strand, within PGA1_c02430at 219.937 kb on + strand, within PGA1_c02430at 219.945 kb on - strand, within PGA1_c02430at 219.973 kb on + strand, within PGA1_c02430at 219.991 kb on - strand, within PGA1_c02430at 220.006 kb on - strand, within PGA1_c02430at 220.006 kb on - strand, within PGA1_c02430at 220.221 kb on + strand, within PGA1_c02430at 220.221 kb on + strand, within PGA1_c02430at 220.221 kb on + strand, within PGA1_c02430at 220.295 kb on + strand, within PGA1_c02430at 220.303 kb on - strand, within PGA1_c02430at 220.305 kb on + strand, within PGA1_c02430at 220.337 kb on + strand, within PGA1_c02430at 220.345 kb on - strand, within PGA1_c02430at 220.415 kb on + strand, within PGA1_c02430at 220.415 kb on + strand, within PGA1_c02430at 220.423 kb on - strand, within PGA1_c02430at 220.436 kb on + strand, within PGA1_c02430at 220.439 kb on - strand, within PGA1_c02430at 220.439 kb on - strand, within PGA1_c02430at 220.597 kb on + strand, within PGA1_c02430at 220.603 kb on + strand, within PGA1_c02430at 220.611 kb on - strand, within PGA1_c02430at 220.613 kb on + strand, within PGA1_c02430at 220.613 kb on + strand, within PGA1_c02430at 220.621 kb on - strand, within PGA1_c02430at 220.622 kb on + strand, within PGA1_c02430at 220.622 kb on + strand, within PGA1_c02430at 220.627 kb on + strand, within PGA1_c02430at 220.630 kb on - strand, within PGA1_c02430at 220.636 kb on - strand, within PGA1_c02430at 220.652 kb on - strand, within PGA1_c02430at 220.696 kb on + strand, within PGA1_c02430at 220.704 kb on - strand, within PGA1_c02430at 220.737 kb on + strandat 220.832 kb on - strandat 220.870 kb on + strandat 220.893 kb on + strandat 220.893 kb on + strandat 220.893 kb on + strandat 220.893 kb on + strandat 221.050 kb on + strandat 221.052 kb on - strandat 221.092 kb on - strand, within PGA1_c02440at 221.092 kb on - strand, within PGA1_c02440at 221.178 kb on + strand, within PGA1_c02440at 221.189 kb on + strand, within PGA1_c02440at 221.223 kb on - strand, within PGA1_c02440at 221.246 kb on + strand, within PGA1_c02440at 221.253 kb on - strand, within PGA1_c02440at 221.299 kb on - strand, within PGA1_c02440at 221.299 kb on - strand, within PGA1_c02440at 221.333 kb on + strand, within PGA1_c02440at 221.343 kb on + strand, within PGA1_c02440at 221.351 kb on - strand, within PGA1_c02440at 221.356 kb on - strand, within PGA1_c02440at 221.404 kb on + strand, within PGA1_c02440at 221.404 kb on + strand, within PGA1_c02440at 221.414 kb on + strand, within PGA1_c02440at 221.414 kb on + strand, within PGA1_c02440at 221.414 kb on + strand, within PGA1_c02440at 221.414 kb on + strand, within PGA1_c02440at 221.414 kb on + strand, within PGA1_c02440at 221.414 kb on + strand, within PGA1_c02440at 221.414 kb on + strand, within PGA1_c02440at 221.414 kb on + strand, within PGA1_c02440at 221.422 kb on - strand, within PGA1_c02440at 221.422 kb on - strand, within PGA1_c02440at 221.422 kb on - strand, within PGA1_c02440at 221.423 kb on + strand, within PGA1_c02440at 221.459 kb on + strand, within PGA1_c02440at 221.459 kb on + strand, within PGA1_c02440at 221.459 kb on + strand, within PGA1_c02440at 221.459 kb on + strand, within PGA1_c02440at 221.520 kb on + strand, within PGA1_c02440at 221.528 kb on - strand, within PGA1_c02440at 221.635 kb on + strand, within PGA1_c02440at 221.635 kb on + strand, within PGA1_c02440at 221.643 kb on - strand, within PGA1_c02440at 221.643 kb on - strand, within PGA1_c02440at 221.654 kb on - strand, within PGA1_c02440at 221.690 kb on + strand, within PGA1_c02440at 221.698 kb on - strand, within PGA1_c02440at 221.708 kb on - strand, within PGA1_c02440at 221.848 kb on + strand, within PGA1_c02440at 221.945 kb on - strand, within PGA1_c02440at 221.955 kb on - strand, within PGA1_c02440at 221.973 kb on - strand, within PGA1_c02440at 222.004 kb on + strand, within PGA1_c02440at 222.007 kb on - strand, within PGA1_c02440at 222.007 kb on - strand, within PGA1_c02440at 222.052 kb on - strand, within PGA1_c02440at 222.120 kb on - strand, within PGA1_c02440at 222.122 kb on - strand, within PGA1_c02440at 222.154 kb on + strand, within PGA1_c02440at 222.260 kb on - strand, within PGA1_c02440at 222.261 kb on + strand, within PGA1_c02440at 222.269 kb on - strand, within PGA1_c02440at 222.319 kb on + strand, within PGA1_c02440at 222.327 kb on - strand, within PGA1_c02440at 222.387 kb on + strand, within PGA1_c02440at 222.390 kb on - strand, within PGA1_c02440at 222.395 kb on - strand, within PGA1_c02440at 222.395 kb on - strand, within PGA1_c02440at 222.401 kb on - strand, within PGA1_c02440at 222.408 kb on + strand, within PGA1_c02440at 222.416 kb on + strand, within PGA1_c02440at 222.416 kb on + strand, within PGA1_c02440at 222.416 kb on - strand, within PGA1_c02440at 222.416 kb on - strand, within PGA1_c02440at 222.419 kb on + strand, within PGA1_c02440at 222.422 kb on - strand, within PGA1_c02440at 222.424 kb on - strand, within PGA1_c02440at 222.461 kb on + strand, within PGA1_c02440at 222.461 kb on + strand, within PGA1_c02440at 222.532 kb on + strand, within PGA1_c02440at 222.598 kb on - strand, within PGA1_c02440at 222.598 kb on - strand, within PGA1_c02440at 222.611 kb on + strand, within PGA1_c02440at 222.704 kb on - strand, within PGA1_c02440at 222.790 kb on - strand, within PGA1_c02440at 222.819 kb on + strand, within PGA1_c02440at 222.830 kb on + strand, within PGA1_c02440at 222.897 kb on + strand, within PGA1_c02440at 222.958 kb on + strand, within PGA1_c02440at 222.966 kb on - strand, within PGA1_c02440at 222.966 kb on - strand, within PGA1_c02440at 223.030 kb on - strandat 223.062 kb on - strandat 223.094 kb on - strandat 223.094 kb on - strandat 223.125 kb on - strandat 223.184 kb on - strandat 223.186 kb on + strandat 223.203 kb on + strandat 223.254 kb on + strandat 223.267 kb on - strandat 223.312 kb on + strandat 223.315 kb on - strandat 223.341 kb on + strand, within PGA1_c02450at 223.354 kb on - strand, within PGA1_c02450at 223.356 kb on + strand, within PGA1_c02450at 223.356 kb on + strand, within PGA1_c02450at 223.356 kb on + strand, within PGA1_c02450at 223.356 kb on + strand, within PGA1_c02450at 223.356 kb on + strand, within PGA1_c02450at 223.356 kb on + strand, within PGA1_c02450at 223.356 kb on + strand, within PGA1_c02450at 223.356 kb on + strand, within PGA1_c02450at 223.356 kb on + strand, within PGA1_c02450at 223.364 kb on - strand, within PGA1_c02450at 223.364 kb on - strand, within PGA1_c02450at 223.364 kb on - strand, within PGA1_c02450at 223.364 kb on - strand, within PGA1_c02450at 223.364 kb on - strand, within PGA1_c02450at 223.364 kb on - strand, within PGA1_c02450at 223.410 kb on - strand, within PGA1_c02450at 223.410 kb on - strand, within PGA1_c02450at 223.444 kb on - strand, within PGA1_c02450at 223.499 kb on + strand, within PGA1_c02450at 223.569 kb on - strand, within PGA1_c02450at 223.579 kb on + strand, within PGA1_c02450at 223.587 kb on - strand, within PGA1_c02450at 223.605 kb on - strand, within PGA1_c02450at 223.606 kb on + strand, within PGA1_c02450at 223.634 kb on + strand, within PGA1_c02450at 223.640 kb on - strand, within PGA1_c02450at 223.670 kb on - strand, within PGA1_c02450at 223.670 kb on - strand, within PGA1_c02450at 223.672 kb on + strand, within PGA1_c02450at 223.672 kb on + strand, within PGA1_c02450at 223.680 kb on - strand, within PGA1_c02450at 223.680 kb on - strand, within PGA1_c02450at 223.680 kb on - strand, within PGA1_c02450at 223.700 kb on + strand, within PGA1_c02450at 223.742 kb on + strand, within PGA1_c02450at 223.747 kb on + strand, within PGA1_c02450at 223.843 kb on - strand, within PGA1_c02450at 223.872 kb on + strand, within PGA1_c02450at 223.873 kb on - strand, within PGA1_c02450at 223.892 kb on + strand, within PGA1_c02450at 223.900 kb on - strand, within PGA1_c02450at 223.924 kb on - strand, within PGA1_c02450at 223.962 kb on - strand, within PGA1_c02450at 223.962 kb on - strand, within PGA1_c02450at 223.962 kb on - strand, within PGA1_c02450at 224.002 kb on + strand, within PGA1_c02450at 224.002 kb on + strand, within PGA1_c02450at 224.002 kb on + strand, within PGA1_c02450at 224.002 kb on + strand, within PGA1_c02450at 224.010 kb on - strand, within PGA1_c02450at 224.010 kb on - strand, within PGA1_c02450at 224.010 kb on - strand, within PGA1_c02450at 224.010 kb on - strand, within PGA1_c02450at 224.010 kb on - strand, within PGA1_c02450at 224.010 kb on - strand, within PGA1_c02450at 224.019 kb on + strand, within PGA1_c02450at 224.027 kb on - strand, within PGA1_c02450at 224.050 kb on + strand, within PGA1_c02450

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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219,852 - PGA1_c02430 0.15 -0.0
219,931 + PGA1_c02430 0.22 +0.7
219,937 + PGA1_c02430 0.22 -0.4
219,945 - PGA1_c02430 0.23 +0.1
219,973 + PGA1_c02430 0.25 +0.4
219,991 - PGA1_c02430 0.27 -0.8
220,006 - PGA1_c02430 0.28 -0.8
220,006 - PGA1_c02430 0.28 +1.1
220,221 + PGA1_c02430 0.47 +0.6
220,221 + PGA1_c02430 0.47 -0.2
220,221 + PGA1_c02430 0.47 +0.2
220,295 + PGA1_c02430 0.53 +0.1
220,303 - PGA1_c02430 0.54 +0.3
220,305 + PGA1_c02430 0.54 -0.6
220,337 + PGA1_c02430 0.56 -0.0
220,345 - PGA1_c02430 0.57 +0.4
220,415 + PGA1_c02430 0.63 -0.1
220,415 + PGA1_c02430 0.63 +0.2
220,423 - PGA1_c02430 0.64 -0.6
220,436 + PGA1_c02430 0.65 +0.2
220,439 - PGA1_c02430 0.65 +0.1
220,439 - PGA1_c02430 0.65 -0.5
220,597 + PGA1_c02430 0.79 +0.8
220,603 + PGA1_c02430 0.79 +0.1
220,611 - PGA1_c02430 0.80 -2.2
220,613 + PGA1_c02430 0.80 -0.2
220,613 + PGA1_c02430 0.80 +0.6
220,621 - PGA1_c02430 0.81 +0.2
220,622 + PGA1_c02430 0.81 +0.5
220,622 + PGA1_c02430 0.81 +1.6
220,627 + PGA1_c02430 0.81 +0.0
220,630 - PGA1_c02430 0.82 +0.1
220,636 - PGA1_c02430 0.82 -0.1
220,652 - PGA1_c02430 0.83 +0.9
220,696 + PGA1_c02430 0.87 +0.4
220,704 - PGA1_c02430 0.88 +0.2
220,737 + +0.5
220,832 - +0.4
220,870 + +0.2
220,893 + -0.8
220,893 + +0.5
220,893 + +1.0
220,893 + +0.7
221,050 + +0.7
221,052 - -0.3
221,092 - PGA1_c02440 0.11 +0.4
221,092 - PGA1_c02440 0.11 +0.3
221,178 + PGA1_c02440 0.14 +0.5
221,189 + PGA1_c02440 0.15 +0.0
221,223 - PGA1_c02440 0.16 -0.4
221,246 + PGA1_c02440 0.17 +0.5
221,253 - PGA1_c02440 0.17 +0.0
221,299 - PGA1_c02440 0.19 +0.2
221,299 - PGA1_c02440 0.19 +1.1
221,333 + PGA1_c02440 0.21 +0.7
221,343 + PGA1_c02440 0.21 +0.6
221,351 - PGA1_c02440 0.22 -0.7
221,356 - PGA1_c02440 0.22 +1.4
221,404 + PGA1_c02440 0.24 -0.7
221,404 + PGA1_c02440 0.24 +0.5
221,414 + PGA1_c02440 0.24 +1.8
221,414 + PGA1_c02440 0.24 +0.0
221,414 + PGA1_c02440 0.24 +0.7
221,414 + PGA1_c02440 0.24 +0.7
221,414 + PGA1_c02440 0.24 -0.1
221,414 + PGA1_c02440 0.24 -0.6
221,414 + PGA1_c02440 0.24 +0.2
221,414 + PGA1_c02440 0.24 +0.2
221,422 - PGA1_c02440 0.25 -0.4
221,422 - PGA1_c02440 0.25 -0.1
221,422 - PGA1_c02440 0.25 +0.4
221,423 + PGA1_c02440 0.25 +0.0
221,459 + PGA1_c02440 0.26 +0.5
221,459 + PGA1_c02440 0.26 +0.3
221,459 + PGA1_c02440 0.26 +0.9
221,459 + PGA1_c02440 0.26 +0.6
221,520 + PGA1_c02440 0.29 +0.7
221,528 - PGA1_c02440 0.29 +0.5
221,635 + PGA1_c02440 0.34 -0.8
221,635 + PGA1_c02440 0.34 -0.9
221,643 - PGA1_c02440 0.34 -0.1
221,643 - PGA1_c02440 0.34 +2.0
221,654 - PGA1_c02440 0.34 -0.1
221,690 + PGA1_c02440 0.36 +0.1
221,698 - PGA1_c02440 0.36 +0.0
221,708 - PGA1_c02440 0.37 +0.6
221,848 + PGA1_c02440 0.43 +0.5
221,945 - PGA1_c02440 0.47 +0.9
221,955 - PGA1_c02440 0.47 +0.4
221,973 - PGA1_c02440 0.48 +0.5
222,004 + PGA1_c02440 0.49 -0.0
222,007 - PGA1_c02440 0.49 +0.2
222,007 - PGA1_c02440 0.49 +0.5
222,052 - PGA1_c02440 0.51 +0.6
222,120 - PGA1_c02440 0.54 +0.0
222,122 - PGA1_c02440 0.54 +0.7
222,154 + PGA1_c02440 0.55 +0.3
222,260 - PGA1_c02440 0.60 -0.1
222,261 + PGA1_c02440 0.60 +0.3
222,269 - PGA1_c02440 0.60 +0.6
222,319 + PGA1_c02440 0.62 +0.4
222,327 - PGA1_c02440 0.63 +0.2
222,387 + PGA1_c02440 0.65 +1.4
222,390 - PGA1_c02440 0.65 -2.5
222,395 - PGA1_c02440 0.66 +0.3
222,395 - PGA1_c02440 0.66 -1.0
222,401 - PGA1_c02440 0.66 +0.6
222,408 + PGA1_c02440 0.66 +0.5
222,416 + PGA1_c02440 0.66 +0.8
222,416 + PGA1_c02440 0.66 +0.8
222,416 - PGA1_c02440 0.66 +1.8
222,416 - PGA1_c02440 0.66 +0.7
222,419 + PGA1_c02440 0.67 -0.6
222,422 - PGA1_c02440 0.67 -0.5
222,424 - PGA1_c02440 0.67 -0.8
222,461 + PGA1_c02440 0.68 -0.1
222,461 + PGA1_c02440 0.68 +0.2
222,532 + PGA1_c02440 0.71 -0.6
222,598 - PGA1_c02440 0.74 -0.3
222,598 - PGA1_c02440 0.74 +0.2
222,611 + PGA1_c02440 0.75 +0.6
222,704 - PGA1_c02440 0.79 +1.4
222,790 - PGA1_c02440 0.82 +0.4
222,819 + PGA1_c02440 0.84 +0.1
222,830 + PGA1_c02440 0.84 +0.0
222,897 + PGA1_c02440 0.87 +0.4
222,958 + PGA1_c02440 0.89 +1.1
222,966 - PGA1_c02440 0.90 +2.2
222,966 - PGA1_c02440 0.90 +1.4
223,030 - +0.1
223,062 - +0.5
223,094 - -0.2
223,094 - +1.4
223,125 - +0.1
223,184 - +0.3
223,186 + -0.0
223,203 + +0.3
223,254 + +0.6
223,267 - -1.0
223,312 + -0.4
223,315 - -0.0
223,341 + PGA1_c02450 0.10 +0.1
223,354 - PGA1_c02450 0.11 +0.3
223,356 + PGA1_c02450 0.11 -0.4
223,356 + PGA1_c02450 0.11 +0.2
223,356 + PGA1_c02450 0.11 -0.0
223,356 + PGA1_c02450 0.11 -0.6
223,356 + PGA1_c02450 0.11 +1.6
223,356 + PGA1_c02450 0.11 -1.1
223,356 + PGA1_c02450 0.11 -0.1
223,356 + PGA1_c02450 0.11 +0.4
223,356 + PGA1_c02450 0.11 -0.2
223,364 - PGA1_c02450 0.12 +0.3
223,364 - PGA1_c02450 0.12 +1.5
223,364 - PGA1_c02450 0.12 +0.8
223,364 - PGA1_c02450 0.12 +0.2
223,364 - PGA1_c02450 0.12 -0.8
223,364 - PGA1_c02450 0.12 +0.5
223,410 - PGA1_c02450 0.16 -0.0
223,410 - PGA1_c02450 0.16 +0.2
223,444 - PGA1_c02450 0.18 +1.2
223,499 + PGA1_c02450 0.22 -1.1
223,569 - PGA1_c02450 0.28 -0.2
223,579 + PGA1_c02450 0.28 -0.1
223,587 - PGA1_c02450 0.29 -0.6
223,605 - PGA1_c02450 0.30 -0.3
223,606 + PGA1_c02450 0.30 +0.6
223,634 + PGA1_c02450 0.33 +1.0
223,640 - PGA1_c02450 0.33 -0.7
223,670 - PGA1_c02450 0.35 -1.3
223,670 - PGA1_c02450 0.35 -0.1
223,672 + PGA1_c02450 0.35 +0.8
223,672 + PGA1_c02450 0.35 -0.8
223,680 - PGA1_c02450 0.36 +0.7
223,680 - PGA1_c02450 0.36 +0.0
223,680 - PGA1_c02450 0.36 +0.4
223,700 + PGA1_c02450 0.38 +0.3
223,742 + PGA1_c02450 0.41 +0.7
223,747 + PGA1_c02450 0.41 +0.7
223,843 - PGA1_c02450 0.48 +0.6
223,872 + PGA1_c02450 0.51 +0.8
223,873 - PGA1_c02450 0.51 +0.9
223,892 + PGA1_c02450 0.52 +1.0
223,900 - PGA1_c02450 0.53 +1.1
223,924 - PGA1_c02450 0.54 +0.8
223,962 - PGA1_c02450 0.57 +0.2
223,962 - PGA1_c02450 0.57 +0.4
223,962 - PGA1_c02450 0.57 +0.5
224,002 + PGA1_c02450 0.60 +0.1
224,002 + PGA1_c02450 0.60 -0.6
224,002 + PGA1_c02450 0.60 +0.7
224,002 + PGA1_c02450 0.60 -2.2
224,010 - PGA1_c02450 0.61 +0.2
224,010 - PGA1_c02450 0.61 -1.0
224,010 - PGA1_c02450 0.61 +0.3
224,010 - PGA1_c02450 0.61 +0.6
224,010 - PGA1_c02450 0.61 +0.3
224,010 - PGA1_c02450 0.61 +0.6
224,019 + PGA1_c02450 0.62 +0.2
224,027 - PGA1_c02450 0.62 +0.6
224,050 + PGA1_c02450 0.64 -0.6

Or see this region's nucleotide sequence