Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02180

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c02170 and PGA1_c02180 are separated by 2 nucleotidesPGA1_c02180 and PGA1_c02190 are separated by 16 nucleotides PGA1_c02170: PGA1_c02170 - Uncharacterized conserved protein, at 197,533 to 198,336 _c02170 PGA1_c02180: PGA1_c02180 - dihydrolipoyl dehydrogenase LpdA, at 198,339 to 199,760 _c02180 PGA1_c02190: PGA1_c02190 - signal transduction histidine kinase, at 199,777 to 201,165 _c02190 Position (kb) 198 199 200Strain fitness (log2 ratio) -1 0 1at 197.368 kb on + strandat 197.370 kb on - strandat 197.376 kb on - strandat 197.412 kb on - strandat 197.470 kb on - strandat 197.486 kb on + strandat 197.486 kb on + strandat 197.486 kb on + strandat 197.501 kb on + strandat 197.507 kb on + strandat 197.509 kb on - strandat 197.515 kb on - strandat 197.621 kb on + strand, within PGA1_c02170at 197.621 kb on + strand, within PGA1_c02170at 197.629 kb on - strand, within PGA1_c02170at 197.629 kb on - strand, within PGA1_c02170at 197.629 kb on - strand, within PGA1_c02170at 197.681 kb on + strand, within PGA1_c02170at 197.687 kb on + strand, within PGA1_c02170at 197.771 kb on + strand, within PGA1_c02170at 197.785 kb on + strand, within PGA1_c02170at 197.785 kb on + strand, within PGA1_c02170at 197.790 kb on + strand, within PGA1_c02170at 197.790 kb on + strand, within PGA1_c02170at 197.790 kb on + strand, within PGA1_c02170at 197.790 kb on + strand, within PGA1_c02170at 197.790 kb on + strand, within PGA1_c02170at 197.792 kb on + strand, within PGA1_c02170at 197.793 kb on - strand, within PGA1_c02170at 197.867 kb on - strand, within PGA1_c02170at 197.867 kb on - strand, within PGA1_c02170at 197.942 kb on + strand, within PGA1_c02170at 198.056 kb on - strand, within PGA1_c02170at 198.096 kb on + strand, within PGA1_c02170at 198.096 kb on + strand, within PGA1_c02170at 198.104 kb on - strand, within PGA1_c02170at 198.109 kb on - strand, within PGA1_c02170at 198.109 kb on - strand, within PGA1_c02170at 198.128 kb on - strand, within PGA1_c02170at 198.168 kb on - strand, within PGA1_c02170at 198.193 kb on + strand, within PGA1_c02170at 198.201 kb on - strand, within PGA1_c02170at 198.204 kb on + strand, within PGA1_c02170at 198.220 kb on - strand, within PGA1_c02170at 198.437 kb on + strandat 198.444 kb on + strandat 198.445 kb on - strandat 198.447 kb on + strandat 198.520 kb on + strand, within PGA1_c02180at 198.525 kb on + strand, within PGA1_c02180at 198.525 kb on + strand, within PGA1_c02180at 198.525 kb on + strand, within PGA1_c02180at 198.533 kb on - strand, within PGA1_c02180at 198.538 kb on - strand, within PGA1_c02180at 198.544 kb on - strand, within PGA1_c02180at 198.558 kb on + strand, within PGA1_c02180at 198.583 kb on - strand, within PGA1_c02180at 198.601 kb on - strand, within PGA1_c02180at 198.619 kb on + strand, within PGA1_c02180at 198.635 kb on - strand, within PGA1_c02180at 198.638 kb on - strand, within PGA1_c02180at 198.663 kb on - strand, within PGA1_c02180at 198.679 kb on + strand, within PGA1_c02180at 198.725 kb on + strand, within PGA1_c02180at 198.725 kb on + strand, within PGA1_c02180at 198.817 kb on + strand, within PGA1_c02180at 198.834 kb on - strand, within PGA1_c02180at 198.834 kb on - strand, within PGA1_c02180at 198.908 kb on - strand, within PGA1_c02180at 198.909 kb on - strand, within PGA1_c02180at 198.916 kb on + strand, within PGA1_c02180at 198.953 kb on + strand, within PGA1_c02180at 198.953 kb on + strand, within PGA1_c02180at 199.034 kb on + strand, within PGA1_c02180at 199.034 kb on + strand, within PGA1_c02180at 199.042 kb on - strand, within PGA1_c02180at 199.058 kb on + strand, within PGA1_c02180at 199.108 kb on + strand, within PGA1_c02180at 199.123 kb on - strand, within PGA1_c02180at 199.158 kb on - strand, within PGA1_c02180at 199.191 kb on + strand, within PGA1_c02180at 199.192 kb on + strand, within PGA1_c02180at 199.199 kb on - strand, within PGA1_c02180at 199.240 kb on - strand, within PGA1_c02180at 199.266 kb on + strand, within PGA1_c02180at 199.299 kb on + strand, within PGA1_c02180at 199.365 kb on + strand, within PGA1_c02180at 199.374 kb on - strand, within PGA1_c02180at 199.385 kb on + strand, within PGA1_c02180at 199.443 kb on - strand, within PGA1_c02180at 199.444 kb on - strand, within PGA1_c02180at 199.444 kb on - strand, within PGA1_c02180at 199.477 kb on + strand, within PGA1_c02180at 199.505 kb on + strand, within PGA1_c02180at 199.508 kb on - strand, within PGA1_c02180at 199.508 kb on - strand, within PGA1_c02180at 199.518 kb on - strand, within PGA1_c02180at 199.521 kb on + strand, within PGA1_c02180at 199.544 kb on - strand, within PGA1_c02180at 199.550 kb on + strand, within PGA1_c02180at 199.626 kb on - strandat 199.630 kb on - strandat 199.654 kb on + strandat 199.654 kb on + strandat 199.662 kb on - strandat 199.711 kb on + strandat 199.711 kb on + strandat 199.719 kb on - strandat 199.719 kb on - strandat 199.745 kb on + strandat 200.037 kb on - strand, within PGA1_c02190at 200.066 kb on + strand, within PGA1_c02190at 200.074 kb on - strand, within PGA1_c02190at 200.074 kb on - strand, within PGA1_c02190at 200.259 kb on + strand, within PGA1_c02190at 200.289 kb on - strand, within PGA1_c02190at 200.297 kb on - strand, within PGA1_c02190at 200.313 kb on + strand, within PGA1_c02190at 200.355 kb on + strand, within PGA1_c02190at 200.363 kb on - strand, within PGA1_c02190at 200.410 kb on - strand, within PGA1_c02190at 200.479 kb on - strand, within PGA1_c02190at 200.499 kb on + strand, within PGA1_c02190at 200.514 kb on + strand, within PGA1_c02190at 200.514 kb on + strand, within PGA1_c02190at 200.514 kb on + strand, within PGA1_c02190at 200.520 kb on + strand, within PGA1_c02190at 200.522 kb on - strand, within PGA1_c02190at 200.525 kb on + strand, within PGA1_c02190at 200.525 kb on + strand, within PGA1_c02190at 200.525 kb on + strand, within PGA1_c02190at 200.533 kb on - strand, within PGA1_c02190at 200.533 kb on - strand, within PGA1_c02190at 200.533 kb on - strand, within PGA1_c02190at 200.533 kb on - strand, within PGA1_c02190at 200.559 kb on + strand, within PGA1_c02190at 200.585 kb on + strand, within PGA1_c02190at 200.636 kb on + strand, within PGA1_c02190at 200.636 kb on + strand, within PGA1_c02190at 200.644 kb on - strand, within PGA1_c02190at 200.660 kb on - strand, within PGA1_c02190at 200.706 kb on - strand, within PGA1_c02190at 200.727 kb on + strand, within PGA1_c02190

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
197,368 + -0.1
197,370 - -0.1
197,376 - +0.8
197,412 - -0.1
197,470 - -0.7
197,486 + +0.9
197,486 + +0.5
197,486 + +0.2
197,501 + +0.4
197,507 + +1.4
197,509 - +0.6
197,515 - +0.3
197,621 + PGA1_c02170 0.11 +1.4
197,621 + PGA1_c02170 0.11 -0.6
197,629 - PGA1_c02170 0.12 +0.4
197,629 - PGA1_c02170 0.12 +1.0
197,629 - PGA1_c02170 0.12 -0.3
197,681 + PGA1_c02170 0.18 -0.8
197,687 + PGA1_c02170 0.19 +0.5
197,771 + PGA1_c02170 0.30 -0.0
197,785 + PGA1_c02170 0.31 +0.4
197,785 + PGA1_c02170 0.31 -1.3
197,790 + PGA1_c02170 0.32 +1.0
197,790 + PGA1_c02170 0.32 +0.7
197,790 + PGA1_c02170 0.32 +0.2
197,790 + PGA1_c02170 0.32 -0.0
197,790 + PGA1_c02170 0.32 +0.1
197,792 + PGA1_c02170 0.32 +0.1
197,793 - PGA1_c02170 0.32 +0.4
197,867 - PGA1_c02170 0.42 +0.2
197,867 - PGA1_c02170 0.42 +0.8
197,942 + PGA1_c02170 0.51 +0.7
198,056 - PGA1_c02170 0.65 +1.1
198,096 + PGA1_c02170 0.70 +1.6
198,096 + PGA1_c02170 0.70 +0.7
198,104 - PGA1_c02170 0.71 +0.4
198,109 - PGA1_c02170 0.72 +0.3
198,109 - PGA1_c02170 0.72 +1.5
198,128 - PGA1_c02170 0.74 +0.7
198,168 - PGA1_c02170 0.79 +0.0
198,193 + PGA1_c02170 0.82 +0.9
198,201 - PGA1_c02170 0.83 -0.2
198,204 + PGA1_c02170 0.83 +0.2
198,220 - PGA1_c02170 0.85 +0.4
198,437 + -0.1
198,444 + +0.2
198,445 - +1.3
198,447 + +0.6
198,520 + PGA1_c02180 0.13 +0.3
198,525 + PGA1_c02180 0.13 +1.2
198,525 + PGA1_c02180 0.13 +0.3
198,525 + PGA1_c02180 0.13 +0.5
198,533 - PGA1_c02180 0.14 +0.4
198,538 - PGA1_c02180 0.14 +0.5
198,544 - PGA1_c02180 0.14 +0.0
198,558 + PGA1_c02180 0.15 +0.4
198,583 - PGA1_c02180 0.17 +0.6
198,601 - PGA1_c02180 0.18 +0.0
198,619 + PGA1_c02180 0.20 +0.2
198,635 - PGA1_c02180 0.21 +0.8
198,638 - PGA1_c02180 0.21 +0.9
198,663 - PGA1_c02180 0.23 +0.4
198,679 + PGA1_c02180 0.24 +0.7
198,725 + PGA1_c02180 0.27 -0.0
198,725 + PGA1_c02180 0.27 -0.1
198,817 + PGA1_c02180 0.34 -0.5
198,834 - PGA1_c02180 0.35 +0.5
198,834 - PGA1_c02180 0.35 -0.5
198,908 - PGA1_c02180 0.40 +0.5
198,909 - PGA1_c02180 0.40 +0.8
198,916 + PGA1_c02180 0.41 +0.3
198,953 + PGA1_c02180 0.43 +0.3
198,953 + PGA1_c02180 0.43 +1.2
199,034 + PGA1_c02180 0.49 -0.2
199,034 + PGA1_c02180 0.49 +0.6
199,042 - PGA1_c02180 0.49 +1.0
199,058 + PGA1_c02180 0.51 +1.4
199,108 + PGA1_c02180 0.54 +0.2
199,123 - PGA1_c02180 0.55 -0.4
199,158 - PGA1_c02180 0.58 +1.3
199,191 + PGA1_c02180 0.60 +0.5
199,192 + PGA1_c02180 0.60 +0.6
199,199 - PGA1_c02180 0.60 +0.2
199,240 - PGA1_c02180 0.63 +0.9
199,266 + PGA1_c02180 0.65 +0.1
199,299 + PGA1_c02180 0.68 +1.2
199,365 + PGA1_c02180 0.72 +0.2
199,374 - PGA1_c02180 0.73 +1.2
199,385 + PGA1_c02180 0.74 -0.0
199,443 - PGA1_c02180 0.78 +0.7
199,444 - PGA1_c02180 0.78 +0.8
199,444 - PGA1_c02180 0.78 -0.1
199,477 + PGA1_c02180 0.80 -0.6
199,505 + PGA1_c02180 0.82 +0.5
199,508 - PGA1_c02180 0.82 +0.6
199,508 - PGA1_c02180 0.82 -0.1
199,518 - PGA1_c02180 0.83 +1.2
199,521 + PGA1_c02180 0.83 +0.4
199,544 - PGA1_c02180 0.85 +0.1
199,550 + PGA1_c02180 0.85 -0.4
199,626 - +1.3
199,630 - -0.4
199,654 + -0.1
199,654 + +1.0
199,662 - +0.5
199,711 + +0.5
199,711 + +0.3
199,719 - +1.4
199,719 - +0.7
199,745 + +1.3
200,037 - PGA1_c02190 0.19 +0.3
200,066 + PGA1_c02190 0.21 +0.7
200,074 - PGA1_c02190 0.21 +0.4
200,074 - PGA1_c02190 0.21 +1.0
200,259 + PGA1_c02190 0.35 +0.5
200,289 - PGA1_c02190 0.37 -0.1
200,297 - PGA1_c02190 0.37 +0.3
200,313 + PGA1_c02190 0.39 +0.4
200,355 + PGA1_c02190 0.42 +0.3
200,363 - PGA1_c02190 0.42 +0.7
200,410 - PGA1_c02190 0.46 +0.4
200,479 - PGA1_c02190 0.51 +0.2
200,499 + PGA1_c02190 0.52 +0.3
200,514 + PGA1_c02190 0.53 -1.4
200,514 + PGA1_c02190 0.53 +0.3
200,514 + PGA1_c02190 0.53 -0.8
200,520 + PGA1_c02190 0.53 -0.3
200,522 - PGA1_c02190 0.54 +0.5
200,525 + PGA1_c02190 0.54 -0.4
200,525 + PGA1_c02190 0.54 +0.5
200,525 + PGA1_c02190 0.54 +0.8
200,533 - PGA1_c02190 0.54 +0.5
200,533 - PGA1_c02190 0.54 +0.6
200,533 - PGA1_c02190 0.54 +0.6
200,533 - PGA1_c02190 0.54 +0.5
200,559 + PGA1_c02190 0.56 -1.0
200,585 + PGA1_c02190 0.58 +0.5
200,636 + PGA1_c02190 0.62 -0.3
200,636 + PGA1_c02190 0.62 +0.8
200,644 - PGA1_c02190 0.62 -0.0
200,660 - PGA1_c02190 0.64 +1.5
200,706 - PGA1_c02190 0.67 +0.9
200,727 + PGA1_c02190 0.68 -0.1

Or see this region's nucleotide sequence