Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2159

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2158 and Psest_2159 are separated by 281 nucleotidesPsest_2159 and Psest_2160 overlap by 4 nucleotides Psest_2158: Psest_2158 - alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase, at 2,308,884 to 2,311,097 _2158 Psest_2159: Psest_2159 - Predicted integral membrane protein, at 2,311,379 to 2,312,377 _2159 Psest_2160: Psest_2160 - Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes, at 2,312,374 to 2,313,615 _2160 Position (kb) 2311 2312 2313Strain fitness (log2 ratio) -2 -1 0 1 2at 2310.394 kb on - strand, within Psest_2158at 2310.394 kb on - strand, within Psest_2158at 2310.394 kb on - strand, within Psest_2158at 2310.394 kb on - strand, within Psest_2158at 2310.423 kb on + strand, within Psest_2158at 2310.423 kb on + strand, within Psest_2158at 2310.423 kb on + strand, within Psest_2158at 2310.423 kb on + strand, within Psest_2158at 2310.424 kb on - strand, within Psest_2158at 2310.424 kb on - strand, within Psest_2158at 2310.456 kb on + strand, within Psest_2158at 2310.456 kb on + strand, within Psest_2158at 2310.456 kb on + strand, within Psest_2158at 2310.456 kb on + strand, within Psest_2158at 2310.456 kb on + strand, within Psest_2158at 2310.456 kb on + strand, within Psest_2158at 2310.456 kb on + strand, within Psest_2158at 2310.456 kb on + strand, within Psest_2158at 2310.456 kb on + strand, within Psest_2158at 2310.456 kb on + strand, within Psest_2158at 2310.456 kb on + strand, within Psest_2158at 2310.457 kb on - strand, within Psest_2158at 2310.457 kb on - strand, within Psest_2158at 2310.457 kb on - strand, within Psest_2158at 2310.457 kb on - strand, within Psest_2158at 2310.457 kb on - strand, within Psest_2158at 2310.457 kb on - strand, within Psest_2158at 2310.457 kb on - strand, within Psest_2158at 2310.457 kb on - strand, within Psest_2158at 2310.457 kb on - strand, within Psest_2158at 2310.576 kb on + strand, within Psest_2158at 2310.576 kb on + strand, within Psest_2158at 2310.742 kb on - strand, within Psest_2158at 2310.821 kb on + strand, within Psest_2158at 2310.821 kb on + strand, within Psest_2158at 2310.822 kb on - strand, within Psest_2158at 2311.096 kb on - strandat 2311.152 kb on + strandat 2311.283 kb on - strandat 2311.283 kb on - strandat 2311.455 kb on + strandat 2311.491 kb on + strand, within Psest_2159at 2311.492 kb on - strand, within Psest_2159at 2311.492 kb on - strand, within Psest_2159at 2311.492 kb on - strand, within Psest_2159at 2311.492 kb on - strand, within Psest_2159at 2311.492 kb on - strand, within Psest_2159at 2311.677 kb on + strand, within Psest_2159at 2311.677 kb on + strand, within Psest_2159at 2311.677 kb on + strand, within Psest_2159at 2311.677 kb on + strand, within Psest_2159at 2311.677 kb on + strand, within Psest_2159at 2311.677 kb on + strand, within Psest_2159at 2311.677 kb on + strand, within Psest_2159at 2311.677 kb on + strand, within Psest_2159at 2311.677 kb on + strand, within Psest_2159at 2311.677 kb on + strand, within Psest_2159at 2311.677 kb on + strand, within Psest_2159at 2311.678 kb on - strand, within Psest_2159at 2311.678 kb on - strand, within Psest_2159at 2311.678 kb on - strand, within Psest_2159at 2311.678 kb on - strand, within Psest_2159at 2311.678 kb on - strand, within Psest_2159at 2311.678 kb on - strand, within Psest_2159at 2311.678 kb on - strand, within Psest_2159at 2311.678 kb on - strand, within Psest_2159at 2311.678 kb on - strand, within Psest_2159at 2311.678 kb on - strand, within Psest_2159at 2311.678 kb on - strand, within Psest_2159at 2311.678 kb on - strand, within Psest_2159at 2311.678 kb on - strand, within Psest_2159at 2311.678 kb on - strand, within Psest_2159at 2311.678 kb on - strand, within Psest_2159at 2311.680 kb on + strand, within Psest_2159at 2311.680 kb on + strand, within Psest_2159at 2311.680 kb on + strand, within Psest_2159at 2311.681 kb on - strand, within Psest_2159at 2311.681 kb on - strand, within Psest_2159at 2311.818 kb on + strand, within Psest_2159at 2311.819 kb on - strand, within Psest_2159at 2311.867 kb on + strand, within Psest_2159at 2311.867 kb on + strand, within Psest_2159at 2311.938 kb on + strand, within Psest_2159at 2311.939 kb on - strand, within Psest_2159at 2312.073 kb on + strand, within Psest_2159at 2312.074 kb on - strand, within Psest_2159at 2312.074 kb on - strand, within Psest_2159at 2312.157 kb on + strand, within Psest_2159at 2312.158 kb on - strand, within Psest_2159at 2312.166 kb on + strand, within Psest_2159at 2312.166 kb on + strand, within Psest_2159at 2312.166 kb on + strand, within Psest_2159at 2312.166 kb on + strand, within Psest_2159at 2312.167 kb on - strand, within Psest_2159at 2312.167 kb on - strand, within Psest_2159at 2312.167 kb on - strand, within Psest_2159at 2312.167 kb on - strand, within Psest_2159at 2312.214 kb on + strand, within Psest_2159at 2312.214 kb on + strand, within Psest_2159at 2312.214 kb on + strand, within Psest_2159at 2312.215 kb on - strand, within Psest_2159at 2312.215 kb on - strand, within Psest_2159at 2312.215 kb on - strand, within Psest_2159at 2312.232 kb on + strand, within Psest_2159at 2312.232 kb on + strand, within Psest_2159at 2312.233 kb on - strand, within Psest_2159at 2312.233 kb on - strand, within Psest_2159at 2312.302 kb on - strandat 2312.302 kb on - strandat 2312.369 kb on - strandat 2312.753 kb on + strand, within Psest_2160at 2312.753 kb on + strand, within Psest_2160at 2312.786 kb on + strand, within Psest_2160at 2312.786 kb on + strand, within Psest_2160at 2312.787 kb on - strand, within Psest_2160at 2312.787 kb on - strand, within Psest_2160at 2312.792 kb on + strand, within Psest_2160at 2312.792 kb on + strand, within Psest_2160at 2312.792 kb on + strand, within Psest_2160at 2312.792 kb on + strand, within Psest_2160at 2312.793 kb on - strand, within Psest_2160at 2312.793 kb on - strand, within Psest_2160at 2312.793 kb on - strand, within Psest_2160at 2312.793 kb on - strand, within Psest_2160at 2312.969 kb on + strand, within Psest_2160at 2313.176 kb on + strand, within Psest_2160

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,310,394 - Psest_2158 0.68 -0.1
2,310,394 - Psest_2158 0.68 +0.4
2,310,394 - Psest_2158 0.68 +0.3
2,310,394 - Psest_2158 0.68 -0.5
2,310,423 + Psest_2158 0.70 +2.5
2,310,423 + Psest_2158 0.70 +0.1
2,310,423 + Psest_2158 0.70 +0.7
2,310,423 + Psest_2158 0.70 +0.7
2,310,424 - Psest_2158 0.70 -1.1
2,310,424 - Psest_2158 0.70 +0.5
2,310,456 + Psest_2158 0.71 +1.3
2,310,456 + Psest_2158 0.71 +0.2
2,310,456 + Psest_2158 0.71 +0.9
2,310,456 + Psest_2158 0.71 +1.3
2,310,456 + Psest_2158 0.71 +0.4
2,310,456 + Psest_2158 0.71 +1.8
2,310,456 + Psest_2158 0.71 +0.7
2,310,456 + Psest_2158 0.71 -1.5
2,310,456 + Psest_2158 0.71 +0.2
2,310,456 + Psest_2158 0.71 +0.3
2,310,456 + Psest_2158 0.71 +0.9
2,310,457 - Psest_2158 0.71 -0.0
2,310,457 - Psest_2158 0.71 +0.5
2,310,457 - Psest_2158 0.71 +1.1
2,310,457 - Psest_2158 0.71 +0.9
2,310,457 - Psest_2158 0.71 +0.1
2,310,457 - Psest_2158 0.71 +0.3
2,310,457 - Psest_2158 0.71 +0.5
2,310,457 - Psest_2158 0.71 +0.4
2,310,457 - Psest_2158 0.71 +1.7
2,310,576 + Psest_2158 0.76 +1.5
2,310,576 + Psest_2158 0.76 +0.3
2,310,742 - Psest_2158 0.84 +0.2
2,310,821 + Psest_2158 0.87 +0.5
2,310,821 + Psest_2158 0.87 +1.4
2,310,822 - Psest_2158 0.88 +0.4
2,311,096 - +0.2
2,311,152 + +0.7
2,311,283 - +1.2
2,311,283 - +0.7
2,311,455 + -0.1
2,311,491 + Psest_2159 0.11 -0.1
2,311,492 - Psest_2159 0.11 +0.3
2,311,492 - Psest_2159 0.11 +0.3
2,311,492 - Psest_2159 0.11 +1.0
2,311,492 - Psest_2159 0.11 +0.5
2,311,492 - Psest_2159 0.11 +0.9
2,311,677 + Psest_2159 0.30 -0.0
2,311,677 + Psest_2159 0.30 -0.4
2,311,677 + Psest_2159 0.30 -0.2
2,311,677 + Psest_2159 0.30 +1.2
2,311,677 + Psest_2159 0.30 -0.1
2,311,677 + Psest_2159 0.30 -0.1
2,311,677 + Psest_2159 0.30 -0.5
2,311,677 + Psest_2159 0.30 +1.3
2,311,677 + Psest_2159 0.30 +0.3
2,311,677 + Psest_2159 0.30 -0.7
2,311,677 + Psest_2159 0.30 +0.3
2,311,678 - Psest_2159 0.30 +0.3
2,311,678 - Psest_2159 0.30 +0.2
2,311,678 - Psest_2159 0.30 +0.5
2,311,678 - Psest_2159 0.30 +1.5
2,311,678 - Psest_2159 0.30 -0.1
2,311,678 - Psest_2159 0.30 +0.1
2,311,678 - Psest_2159 0.30 -0.2
2,311,678 - Psest_2159 0.30 +0.2
2,311,678 - Psest_2159 0.30 -0.4
2,311,678 - Psest_2159 0.30 +1.3
2,311,678 - Psest_2159 0.30 -1.1
2,311,678 - Psest_2159 0.30 -2.3
2,311,678 - Psest_2159 0.30 +0.1
2,311,678 - Psest_2159 0.30 +0.9
2,311,678 - Psest_2159 0.30 +0.6
2,311,680 + Psest_2159 0.30 -0.6
2,311,680 + Psest_2159 0.30 -2.0
2,311,680 + Psest_2159 0.30 +1.5
2,311,681 - Psest_2159 0.30 +0.6
2,311,681 - Psest_2159 0.30 +1.1
2,311,818 + Psest_2159 0.44 +0.8
2,311,819 - Psest_2159 0.44 +0.0
2,311,867 + Psest_2159 0.49 +1.1
2,311,867 + Psest_2159 0.49 +0.6
2,311,938 + Psest_2159 0.56 +0.3
2,311,939 - Psest_2159 0.56 -0.7
2,312,073 + Psest_2159 0.69 +0.9
2,312,074 - Psest_2159 0.70 -0.2
2,312,074 - Psest_2159 0.70 +1.2
2,312,157 + Psest_2159 0.78 +0.3
2,312,158 - Psest_2159 0.78 +0.7
2,312,166 + Psest_2159 0.79 -0.4
2,312,166 + Psest_2159 0.79 -0.0
2,312,166 + Psest_2159 0.79 +0.7
2,312,166 + Psest_2159 0.79 +1.9
2,312,167 - Psest_2159 0.79 +1.1
2,312,167 - Psest_2159 0.79 +1.1
2,312,167 - Psest_2159 0.79 -0.4
2,312,167 - Psest_2159 0.79 +0.5
2,312,214 + Psest_2159 0.84 +0.1
2,312,214 + Psest_2159 0.84 -0.1
2,312,214 + Psest_2159 0.84 +1.9
2,312,215 - Psest_2159 0.84 +1.3
2,312,215 - Psest_2159 0.84 +1.2
2,312,215 - Psest_2159 0.84 +0.0
2,312,232 + Psest_2159 0.85 +0.0
2,312,232 + Psest_2159 0.85 -0.7
2,312,233 - Psest_2159 0.85 +1.4
2,312,233 - Psest_2159 0.85 +0.9
2,312,302 - -0.4
2,312,302 - +0.2
2,312,369 - +0.9
2,312,753 + Psest_2160 0.31 +0.4
2,312,753 + Psest_2160 0.31 +0.7
2,312,786 + Psest_2160 0.33 -0.1
2,312,786 + Psest_2160 0.33 +0.1
2,312,787 - Psest_2160 0.33 -0.4
2,312,787 - Psest_2160 0.33 +0.5
2,312,792 + Psest_2160 0.34 -0.6
2,312,792 + Psest_2160 0.34 -0.4
2,312,792 + Psest_2160 0.34 -0.1
2,312,792 + Psest_2160 0.34 +1.0
2,312,793 - Psest_2160 0.34 +0.6
2,312,793 - Psest_2160 0.34 +0.1
2,312,793 - Psest_2160 0.34 -0.5
2,312,793 - Psest_2160 0.34 -1.1
2,312,969 + Psest_2160 0.48 +0.3
2,313,176 + Psest_2160 0.65 +0.1

Or see this region's nucleotide sequence