Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02000

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c01990 and PGA1_c02000 are separated by 3 nucleotidesPGA1_c02000 and PGA1_c02010 are separated by 12 nucleotidesPGA1_c02010 and PGA1_c02020 are separated by 148 nucleotides PGA1_c01990: PGA1_c01990 - glutamate/glutamine/aspartate/asparagine transport system permease protein BztB, at 181,748 to 182,980 _c01990 PGA1_c02000: PGA1_c02000 - glutamate/glutamine/aspartate/asparagine transport system permease protein BztC, at 182,984 to 184,282 _c02000 PGA1_c02010: PGA1_c02010 - glutamate/glutamine/aspartate/asparagine transport ATP-binding protein BztD, at 184,295 to 185,086 _c02010 PGA1_c02020: PGA1_c02020 - Predicted metal-binding protein, at 185,235 to 185,693 _c02020 Position (kb) 182 183 184 185Strain fitness (log2 ratio) -1 0 1 2 3at 182.021 kb on + strand, within PGA1_c01990at 182.084 kb on - strand, within PGA1_c01990at 182.095 kb on + strand, within PGA1_c01990at 182.281 kb on - strand, within PGA1_c01990at 182.339 kb on - strand, within PGA1_c01990at 182.371 kb on + strand, within PGA1_c01990at 182.371 kb on + strand, within PGA1_c01990at 182.371 kb on + strand, within PGA1_c01990at 182.379 kb on - strand, within PGA1_c01990at 182.384 kb on - strand, within PGA1_c01990at 182.407 kb on - strand, within PGA1_c01990at 182.483 kb on - strand, within PGA1_c01990at 182.515 kb on + strand, within PGA1_c01990at 182.523 kb on - strand, within PGA1_c01990at 182.523 kb on - strand, within PGA1_c01990at 182.525 kb on - strand, within PGA1_c01990at 182.556 kb on - strand, within PGA1_c01990at 182.592 kb on + strand, within PGA1_c01990at 182.608 kb on - strand, within PGA1_c01990at 182.648 kb on + strand, within PGA1_c01990at 182.666 kb on + strand, within PGA1_c01990at 182.674 kb on - strand, within PGA1_c01990at 182.674 kb on - strand, within PGA1_c01990at 182.810 kb on + strand, within PGA1_c01990at 182.818 kb on - strand, within PGA1_c01990at 182.828 kb on - strand, within PGA1_c01990at 182.853 kb on + strand, within PGA1_c01990at 182.988 kb on + strandat 182.999 kb on - strandat 183.069 kb on - strandat 183.142 kb on + strand, within PGA1_c02000at 183.142 kb on + strand, within PGA1_c02000at 183.150 kb on - strand, within PGA1_c02000at 183.150 kb on - strand, within PGA1_c02000at 183.150 kb on - strand, within PGA1_c02000at 183.152 kb on + strand, within PGA1_c02000at 183.232 kb on - strand, within PGA1_c02000at 183.380 kb on - strand, within PGA1_c02000at 183.380 kb on - strand, within PGA1_c02000at 183.392 kb on + strand, within PGA1_c02000at 183.473 kb on - strand, within PGA1_c02000at 183.483 kb on - strand, within PGA1_c02000at 183.530 kb on + strand, within PGA1_c02000at 183.533 kb on - strand, within PGA1_c02000at 183.533 kb on - strand, within PGA1_c02000at 183.538 kb on - strand, within PGA1_c02000at 183.541 kb on + strand, within PGA1_c02000at 183.622 kb on + strand, within PGA1_c02000at 183.635 kb on - strand, within PGA1_c02000at 183.647 kb on - strand, within PGA1_c02000at 183.674 kb on - strand, within PGA1_c02000at 183.685 kb on - strand, within PGA1_c02000at 183.685 kb on - strand, within PGA1_c02000at 183.721 kb on + strand, within PGA1_c02000at 183.736 kb on + strand, within PGA1_c02000at 183.744 kb on - strand, within PGA1_c02000at 183.744 kb on - strand, within PGA1_c02000at 183.751 kb on + strand, within PGA1_c02000at 183.751 kb on + strand, within PGA1_c02000at 183.871 kb on + strand, within PGA1_c02000at 183.939 kb on + strand, within PGA1_c02000at 183.960 kb on - strand, within PGA1_c02000at 183.979 kb on - strand, within PGA1_c02000at 183.981 kb on + strand, within PGA1_c02000at 183.989 kb on - strand, within PGA1_c02000at 184.030 kb on + strand, within PGA1_c02000at 184.086 kb on - strand, within PGA1_c02000at 184.152 kb on + strand, within PGA1_c02000at 184.192 kb on - strandat 184.192 kb on - strandat 184.247 kb on - strandat 184.276 kb on + strandat 184.276 kb on + strandat 184.279 kb on - strandat 184.284 kb on - strandat 184.284 kb on - strandat 184.476 kb on + strand, within PGA1_c02010at 184.530 kb on - strand, within PGA1_c02010at 184.542 kb on + strand, within PGA1_c02010at 184.542 kb on + strand, within PGA1_c02010at 184.542 kb on + strand, within PGA1_c02010at 184.542 kb on + strand, within PGA1_c02010at 184.542 kb on + strand, within PGA1_c02010at 184.550 kb on - strand, within PGA1_c02010at 184.555 kb on - strand, within PGA1_c02010at 184.584 kb on + strand, within PGA1_c02010at 184.584 kb on + strand, within PGA1_c02010at 184.592 kb on - strand, within PGA1_c02010at 184.592 kb on - strand, within PGA1_c02010at 184.611 kb on + strand, within PGA1_c02010at 184.620 kb on - strand, within PGA1_c02010at 184.621 kb on + strand, within PGA1_c02010at 184.663 kb on + strand, within PGA1_c02010at 184.694 kb on + strand, within PGA1_c02010at 184.768 kb on + strand, within PGA1_c02010at 184.773 kb on - strand, within PGA1_c02010at 184.773 kb on - strand, within PGA1_c02010at 184.775 kb on + strand, within PGA1_c02010at 184.775 kb on + strand, within PGA1_c02010at 184.778 kb on - strand, within PGA1_c02010at 184.786 kb on + strand, within PGA1_c02010at 184.856 kb on - strand, within PGA1_c02010at 184.912 kb on + strand, within PGA1_c02010at 184.919 kb on + strand, within PGA1_c02010at 184.929 kb on + strand, within PGA1_c02010at 185.082 kb on + strandat 185.090 kb on - strandat 185.215 kb on + strandat 185.253 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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182,021 + PGA1_c01990 0.22 +2.8
182,084 - PGA1_c01990 0.27 +3.1
182,095 + PGA1_c01990 0.28 +2.6
182,281 - PGA1_c01990 0.43 +2.3
182,339 - PGA1_c01990 0.48 +2.1
182,371 + PGA1_c01990 0.51 +2.7
182,371 + PGA1_c01990 0.51 +2.3
182,371 + PGA1_c01990 0.51 +2.2
182,379 - PGA1_c01990 0.51 +2.3
182,384 - PGA1_c01990 0.52 +2.6
182,407 - PGA1_c01990 0.53 +2.6
182,483 - PGA1_c01990 0.60 +2.5
182,515 + PGA1_c01990 0.62 +1.8
182,523 - PGA1_c01990 0.63 +2.4
182,523 - PGA1_c01990 0.63 +2.8
182,525 - PGA1_c01990 0.63 +3.1
182,556 - PGA1_c01990 0.66 +2.3
182,592 + PGA1_c01990 0.68 +2.6
182,608 - PGA1_c01990 0.70 +2.4
182,648 + PGA1_c01990 0.73 +2.1
182,666 + PGA1_c01990 0.74 +1.7
182,674 - PGA1_c01990 0.75 +2.5
182,674 - PGA1_c01990 0.75 +2.4
182,810 + PGA1_c01990 0.86 +2.7
182,818 - PGA1_c01990 0.87 +1.9
182,828 - PGA1_c01990 0.88 +1.7
182,853 + PGA1_c01990 0.90 +3.4
182,988 + +3.0
182,999 - +2.3
183,069 - +2.5
183,142 + PGA1_c02000 0.12 +2.5
183,142 + PGA1_c02000 0.12 +2.5
183,150 - PGA1_c02000 0.13 +2.8
183,150 - PGA1_c02000 0.13 +2.3
183,150 - PGA1_c02000 0.13 +2.0
183,152 + PGA1_c02000 0.13 +2.6
183,232 - PGA1_c02000 0.19 +2.8
183,380 - PGA1_c02000 0.30 +1.9
183,380 - PGA1_c02000 0.30 +2.0
183,392 + PGA1_c02000 0.31 +2.1
183,473 - PGA1_c02000 0.38 +1.9
183,483 - PGA1_c02000 0.38 +2.2
183,530 + PGA1_c02000 0.42 +3.3
183,533 - PGA1_c02000 0.42 +2.5
183,533 - PGA1_c02000 0.42 +2.3
183,538 - PGA1_c02000 0.43 +2.2
183,541 + PGA1_c02000 0.43 +2.2
183,622 + PGA1_c02000 0.49 +2.5
183,635 - PGA1_c02000 0.50 +3.2
183,647 - PGA1_c02000 0.51 +2.4
183,674 - PGA1_c02000 0.53 +2.7
183,685 - PGA1_c02000 0.54 +2.3
183,685 - PGA1_c02000 0.54 +3.0
183,721 + PGA1_c02000 0.57 +3.1
183,736 + PGA1_c02000 0.58 +1.7
183,744 - PGA1_c02000 0.59 +3.2
183,744 - PGA1_c02000 0.59 +2.3
183,751 + PGA1_c02000 0.59 +2.5
183,751 + PGA1_c02000 0.59 +3.2
183,871 + PGA1_c02000 0.68 +2.7
183,939 + PGA1_c02000 0.74 +1.3
183,960 - PGA1_c02000 0.75 +2.5
183,979 - PGA1_c02000 0.77 +1.8
183,981 + PGA1_c02000 0.77 +3.3
183,989 - PGA1_c02000 0.77 +2.6
184,030 + PGA1_c02000 0.81 +2.1
184,086 - PGA1_c02000 0.85 +2.4
184,152 + PGA1_c02000 0.90 +2.5
184,192 - +2.9
184,192 - +2.1
184,247 - +2.6
184,276 + +2.3
184,276 + +2.2
184,279 - +2.5
184,284 - +2.1
184,284 - +2.7
184,476 + PGA1_c02010 0.23 +2.2
184,530 - PGA1_c02010 0.30 +3.0
184,542 + PGA1_c02010 0.31 +2.1
184,542 + PGA1_c02010 0.31 +1.9
184,542 + PGA1_c02010 0.31 +2.3
184,542 + PGA1_c02010 0.31 +2.5
184,542 + PGA1_c02010 0.31 +2.8
184,550 - PGA1_c02010 0.32 +2.5
184,555 - PGA1_c02010 0.33 +2.2
184,584 + PGA1_c02010 0.36 +2.7
184,584 + PGA1_c02010 0.36 +2.6
184,592 - PGA1_c02010 0.38 +2.3
184,592 - PGA1_c02010 0.38 +3.0
184,611 + PGA1_c02010 0.40 +3.4
184,620 - PGA1_c02010 0.41 +2.3
184,621 + PGA1_c02010 0.41 +1.8
184,663 + PGA1_c02010 0.46 +2.7
184,694 + PGA1_c02010 0.50 +2.3
184,768 + PGA1_c02010 0.60 +2.3
184,773 - PGA1_c02010 0.60 +2.2
184,773 - PGA1_c02010 0.60 +2.2
184,775 + PGA1_c02010 0.61 +2.6
184,775 + PGA1_c02010 0.61 +1.6
184,778 - PGA1_c02010 0.61 +1.9
184,786 + PGA1_c02010 0.62 +2.9
184,856 - PGA1_c02010 0.71 +2.4
184,912 + PGA1_c02010 0.78 +2.4
184,919 + PGA1_c02010 0.79 +2.7
184,929 + PGA1_c02010 0.80 +2.5
185,082 + +0.7
185,090 - +1.1
185,215 + +0.0
185,253 + -1.2

Or see this region's nucleotide sequence