Strain Fitness in Shewanella amazonensis SB2B around Sama_2195

Experiment: Carbenicillin 0.00195312 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 0.00195312 mg/ml
2,653,157	+	queA	Sama_2194	0.52	+0.4
2,653,157	+	queA	Sama_2194	0.52	+0.2
2,653,157	+	queA	Sama_2194	0.52	-0.8
2,653,158	-	queA	Sama_2194	0.52	-0.1
2,653,158	-	queA	Sama_2194	0.52	-0.2
2,653,206	+	queA	Sama_2194	0.57	-1.1
2,653,207	-	queA	Sama_2194	0.57	-3.1
2,653,208	+	queA	Sama_2194	0.57	+0.2
2,653,209	-	queA	Sama_2194	0.57	+0.1
2,653,224	+	queA	Sama_2194	0.58	+2.2
2,653,260	+	queA	Sama_2194	0.62	+0.4
2,653,260	+	queA	Sama_2194	0.62	-1.8
2,653,261	-	queA	Sama_2194	0.62	+1.0
2,653,261	-	queA	Sama_2194	0.62	+0.2
2,653,404	+	queA	Sama_2194	0.76	+0.8
2,653,405	-	queA	Sama_2194	0.76	-0.7
2,653,405	-	queA	Sama_2194	0.76	-0.2
2,653,405	-	queA	Sama_2194	0.76	+0.4
2,653,405	-	queA	Sama_2194	0.76	+0.1
2,653,406	-	queA	Sama_2194	0.76	+0.4
2,653,479	+	queA	Sama_2194	0.83	+0.8
2,653,638	+				-0.6
2,653,638	+				-0.7
2,653,639	-				+0.8
2,653,639	-				+1.4
2,653,639	-				-0.8
2,653,648	+				-0.3
2,653,649	-				-0.7
2,653,658	+				-0.8
2,653,658	+				-0.2
2,653,658	+				+0.4
2,653,658	+				-0.6
2,653,658	+				+0.4
2,653,658	+				-2.0
2,653,658	+				+0.2
2,653,659	-				-0.4
2,653,659	-				-0.8
2,653,659	-				-2.1
2,653,660	+				+0.4
2,653,661	-				+0.8
2,653,661	-				-0.7
2,653,661	-				+0.0
2,653,661	-				-0.4
2,653,661	-				+0.8
2,653,661	-				-0.8
2,653,693	+				-1.7
2,653,742	+				+0.4
2,653,742	+				+0.1
2,653,743	-				-0.9
2,653,743	-				-0.4
2,653,743	-				+1.1
2,653,754	+				-0.8
2,653,755	-				-0.2
2,653,769	+				+0.4
2,653,769	+				-0.2
2,653,839	+				+1.4
2,653,839	+				+1.8
2,653,891	+				+1.2
2,653,891	+				-0.6
2,653,891	+				-1.0
2,653,891	+				-0.0
2,653,909	+				-0.7
2,653,909	+				-1.2
2,653,909	+				-0.0
2,653,909	+				-0.7
2,653,909	+				+0.2
2,653,927	+				-0.2
2,653,945	+				-0.9
2,653,945	+				-1.7
2,653,945	+				-1.0
2,654,003	-				-1.2
2,654,003	-				+0.4
2,654,037	+				+0.2
2,654,037	+				-0.8
2,654,038	-				-2.3
2,654,072	+				+0.4
2,654,072	+				+0.9
2,654,073	-				-0.8
2,654,076	-				+1.2
2,654,107	+				-1.3
2,654,107	+				-0.2
2,654,108	-				+2.4
2,654,141	+				-0.4
2,654,174	+				+0.8
2,654,175	-				+0.5
2,654,344	+		Sama_2195	0.34	-0.5
2,654,345	-		Sama_2195	0.34	+0.4
2,654,345	-		Sama_2195	0.34	+0.4
2,654,362	+		Sama_2195	0.37	-0.6
2,654,363	-		Sama_2195	0.37	+0.2
2,654,363	-		Sama_2195	0.37	-0.8
2,654,375	-		Sama_2195	0.39	-1.2
2,654,412	+		Sama_2195	0.45	+0.2
2,654,413	-		Sama_2195	0.46	-1.4
2,654,413	-		Sama_2195	0.46	-2.2
2,654,432	+		Sama_2195	0.49	-0.8
2,654,433	-		Sama_2195	0.49	-0.2
2,654,451	+		Sama_2195	0.52	-1.2
2,654,466	-		Sama_2195	0.55	-0.6
2,654,466	-		Sama_2195	0.55	-1.0
2,654,538	+		Sama_2195	0.67	-1.2
2,654,538	+		Sama_2195	0.67	+0.2
2,654,538	+		Sama_2195	0.67	-1.2
2,654,692	-				+0.5
2,654,727	+				+0.8
2,654,728	-				+0.4
2,654,728	-				-0.6
2,654,728	-				+0.8
2,654,734	-				+0.4
2,654,734	-				-0.8
2,654,763	-				+0.2
2,654,795	-		Sama_2196	0.12	+0.3
2,654,798	+		Sama_2196	0.12	-1.7
2,654,798	+		Sama_2196	0.12	+0.7
2,654,798	+		Sama_2196	0.12	+0.3
2,654,799	-		Sama_2196	0.12	-0.9
2,654,827	-		Sama_2196	0.18	+1.2
2,654,840	+		Sama_2196	0.20	+0.2
2,654,840	+		Sama_2196	0.20	-0.2
2,654,840	+		Sama_2196	0.20	-1.2
2,654,919	-		Sama_2196	0.36	-0.6
2,654,992	+		Sama_2196	0.50	-0.5
2,654,993	-		Sama_2196	0.50	-0.8
2,655,041	+		Sama_2196	0.59	-0.2
2,655,042	-		Sama_2196	0.60	-0.8
2,655,053	-		Sama_2196	0.62	+0.8
2,655,053	-		Sama_2196	0.62	-0.8
2,655,110	+		Sama_2196	0.73	-1.2
2,655,110	+		Sama_2196	0.73	-1.0
2,655,110	+		Sama_2196	0.73	-0.0
2,655,110	+		Sama_2196	0.73	-0.0
2,655,110	+		Sama_2196	0.73	-0.8
2,655,110	+		Sama_2196	0.73	-0.9
2,655,111	-		Sama_2196	0.73	-0.8
2,655,147	+		Sama_2196	0.80	-0.3
2,655,147	+		Sama_2196	0.80	-0.4
2,655,148	-		Sama_2196	0.80	-0.9
2,655,148	-		Sama_2196	0.80	-0.1
2,655,148	-		Sama_2196	0.80	-1.3
2,655,148	-		Sama_2196	0.80	-0.2
2,655,148	-		Sama_2196	0.80	+1.4
2,655,148	-		Sama_2196	0.80	-0.7
2,655,148	-		Sama_2196	0.80	-0.6
2,655,263	+				-1.0
2,655,263	+				+0.1
2,655,361	+				-0.6
2,655,361	+				-0.8
2,655,361	+				-0.6
2,655,362	-				-1.9
2,655,362	-				-1.4
2,655,362	-				-0.6
2,655,391	-		Sama_2197	0.12	+0.0
2,655,406	+		Sama_2197	0.14	-0.6
2,655,450	+		Sama_2197	0.21	-0.0
2,655,482	+		Sama_2197	0.25	+0.4
2,655,482	+		Sama_2197	0.25	+0.2
2,655,483	-		Sama_2197	0.26	-1.4
2,655,483	-		Sama_2197	0.26	+0.4
2,655,595	+		Sama_2197	0.42	-1.8
2,655,595	+		Sama_2197	0.42	-0.3
2,655,600	-		Sama_2197	0.43	-0.2
2,655,642	-		Sama_2197	0.49	-0.4