Experiment: Carbenicillin 0.00195312 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_1929 and minC are separated by 122 nucleotides minC and Sama_1931 are separated by 29 nucleotides Sama_1931 and Sama_1932 are separated by 2 nucleotides Sama_1932 and Sama_1933 are separated by 213 nucleotides
Sama_1929: Sama_1929 - hypothetical protein (RefSeq), at 2,357,226 to 2,357,504
_1929
Sama_1930: minC - septum formation inhibitor (RefSeq), at 2,357,627 to 2,358,301
minC
Sama_1931: Sama_1931 - septum site-determining protein MinD (RefSeq), at 2,358,331 to 2,359,140
_1931
Sama_1932: Sama_1932 - cell division topological specificity factor MinE (RefSeq), at 2,359,143 to 2,359,400
_1932
Sama_1933: Sama_1933 - ribonuclease D (RefSeq), at 2,359,614 to 2,360,729
_1933
Position (kb)
2358
2359
2360 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2357.383 kb on - strand, within Sama_1929 at 2357.412 kb on + strand, within Sama_1929 at 2357.412 kb on + strand, within Sama_1929 at 2357.413 kb on - strand, within Sama_1929 at 2357.461 kb on + strand, within Sama_1929 at 2357.462 kb on - strand, within Sama_1929 at 2357.487 kb on - strand at 2357.499 kb on + strand at 2357.500 kb on - strand at 2357.500 kb on - strand at 2357.500 kb on - strand at 2357.500 kb on - strand at 2357.504 kb on + strand at 2357.504 kb on + strand at 2357.505 kb on - strand at 2357.505 kb on - strand at 2357.505 kb on - strand at 2357.555 kb on + strand at 2357.555 kb on + strand at 2357.555 kb on + strand at 2357.557 kb on + strand at 2357.557 kb on + strand at 2357.557 kb on + strand at 2357.558 kb on - strand at 2357.558 kb on - strand at 2357.571 kb on + strand at 2357.665 kb on + strand at 2357.665 kb on + strand at 2357.665 kb on + strand at 2357.689 kb on + strand at 2357.689 kb on + strand at 2357.689 kb on + strand at 2357.781 kb on + strand, within minC at 2357.835 kb on + strand, within minC at 2358.014 kb on + strand, within minC at 2358.014 kb on + strand, within minC at 2358.086 kb on - strand, within minC at 2358.091 kb on + strand, within minC at 2358.091 kb on + strand, within minC at 2358.091 kb on + strand, within minC at 2358.092 kb on - strand, within minC at 2358.096 kb on - strand, within minC at 2358.151 kb on + strand, within minC at 2358.181 kb on + strand, within minC at 2358.182 kb on - strand, within minC at 2358.277 kb on - strand at 2358.282 kb on + strand at 2358.282 kb on + strand at 2358.282 kb on + strand at 2358.313 kb on + strand at 2358.342 kb on + strand at 2358.342 kb on + strand at 2358.372 kb on - strand at 2358.376 kb on - strand at 2358.440 kb on + strand, within Sama_1931 at 2358.440 kb on + strand, within Sama_1931 at 2358.474 kb on + strand, within Sama_1931 at 2358.474 kb on + strand, within Sama_1931 at 2358.501 kb on - strand, within Sama_1931 at 2358.673 kb on + strand, within Sama_1931 at 2358.727 kb on + strand, within Sama_1931 at 2358.857 kb on - strand, within Sama_1931 at 2358.875 kb on - strand, within Sama_1931 at 2358.977 kb on + strand, within Sama_1931 at 2358.981 kb on + strand, within Sama_1931 at 2358.981 kb on + strand, within Sama_1931 at 2358.982 kb on - strand, within Sama_1931 at 2359.050 kb on + strand, within Sama_1931 at 2359.555 kb on - strand at 2359.555 kb on - strand at 2359.555 kb on - strand at 2359.586 kb on - strand at 2359.599 kb on + strand at 2359.599 kb on + strand at 2359.600 kb on - strand at 2359.600 kb on - strand at 2359.600 kb on - strand at 2359.603 kb on + strand at 2359.604 kb on - strand at 2359.604 kb on - strand at 2359.689 kb on - strand at 2359.724 kb on - strand at 2359.823 kb on + strand, within Sama_1933 at 2359.824 kb on - strand, within Sama_1933 at 2359.826 kb on - strand, within Sama_1933 at 2360.124 kb on - strand, within Sama_1933 at 2360.128 kb on + strand, within Sama_1933
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.00195312 mg/ml remove 2,357,383 - Sama_1929 0.56 -1.6 2,357,412 + Sama_1929 0.67 +1.0 2,357,412 + Sama_1929 0.67 -0.6 2,357,413 - Sama_1929 0.67 -2.1 2,357,461 + Sama_1929 0.84 +0.5 2,357,462 - Sama_1929 0.85 -0.2 2,357,487 - +0.9 2,357,499 + +0.9 2,357,500 - +0.0 2,357,500 - -1.7 2,357,500 - +0.3 2,357,500 - +0.9 2,357,504 + +1.2 2,357,504 + -1.0 2,357,505 - +0.7 2,357,505 - -1.6 2,357,505 - +0.7 2,357,555 + -0.4 2,357,555 + +1.7 2,357,555 + -1.8 2,357,557 + +0.2 2,357,557 + +1.0 2,357,557 + +0.4 2,357,558 - +0.7 2,357,558 - +0.7 2,357,571 + +0.1 2,357,665 + +0.7 2,357,665 + -0.6 2,357,665 + -1.4 2,357,689 + +0.4 2,357,689 + +0.7 2,357,689 + +1.2 2,357,781 + minC Sama_1930 0.23 +1.3 2,357,835 + minC Sama_1930 0.31 +0.6 2,358,014 + minC Sama_1930 0.57 +1.2 2,358,014 + minC Sama_1930 0.57 -1.4 2,358,086 - minC Sama_1930 0.68 -0.6 2,358,091 + minC Sama_1930 0.69 -0.6 2,358,091 + minC Sama_1930 0.69 -0.1 2,358,091 + minC Sama_1930 0.69 -0.5 2,358,092 - minC Sama_1930 0.69 +0.4 2,358,096 - minC Sama_1930 0.69 +1.2 2,358,151 + minC Sama_1930 0.78 -1.6 2,358,181 + minC Sama_1930 0.82 +0.6 2,358,182 - minC Sama_1930 0.82 -0.7 2,358,277 - -0.3 2,358,282 + -1.6 2,358,282 + -1.0 2,358,282 + -0.8 2,358,313 + +0.2 2,358,342 + -0.8 2,358,342 + +0.4 2,358,372 - +0.6 2,358,376 - +1.7 2,358,440 + Sama_1931 0.13 -0.9 2,358,440 + Sama_1931 0.13 -0.3 2,358,474 + Sama_1931 0.18 -3.6 2,358,474 + Sama_1931 0.18 -1.6 2,358,501 - Sama_1931 0.21 +0.7 2,358,673 + Sama_1931 0.42 -0.1 2,358,727 + Sama_1931 0.49 -1.8 2,358,857 - Sama_1931 0.65 +0.7 2,358,875 - Sama_1931 0.67 -1.1 2,358,977 + Sama_1931 0.80 +0.2 2,358,981 + Sama_1931 0.80 -0.6 2,358,981 + Sama_1931 0.80 -0.3 2,358,982 - Sama_1931 0.80 -1.6 2,359,050 + Sama_1931 0.89 -0.4 2,359,555 - +1.1 2,359,555 - -1.5 2,359,555 - +0.5 2,359,586 - +0.2 2,359,599 + -0.3 2,359,599 + +0.7 2,359,600 - -0.0 2,359,600 - -1.0 2,359,600 - +0.2 2,359,603 + +0.7 2,359,604 - +0.4 2,359,604 - -0.8 2,359,689 - +0.2 2,359,724 - +0.4 2,359,823 + Sama_1933 0.19 +0.7 2,359,824 - Sama_1933 0.19 -2.6 2,359,826 - Sama_1933 0.19 +2.7 2,360,124 - Sama_1933 0.46 -0.3 2,360,128 + Sama_1933 0.46 +0.3
Or see this region's nucleotide sequence