Strain Fitness in Shewanella amazonensis SB2B around Sama_1860

Experiment: Carbenicillin 0.00195312 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 0.00195312 mg/ml
2,262,751	+		Sama_1859	0.37	+1.7
2,262,752	-		Sama_1859	0.37	-1.2
2,262,752	-		Sama_1859	0.37	-0.4
2,262,843	-		Sama_1859	0.42	-0.9
2,262,917	+		Sama_1859	0.47	-0.4
2,262,918	-		Sama_1859	0.47	-1.1
2,262,947	+		Sama_1859	0.49	+1.7
2,262,947	+		Sama_1859	0.49	-0.1
2,262,948	-		Sama_1859	0.49	-0.3
2,262,948	-		Sama_1859	0.49	+0.7
2,262,948	-		Sama_1859	0.49	+1.1
2,262,948	-		Sama_1859	0.49	-0.5
2,262,951	+		Sama_1859	0.49	+0.1
2,262,951	+		Sama_1859	0.49	-1.6
2,262,952	-		Sama_1859	0.49	-1.0
2,262,952	-		Sama_1859	0.49	+1.7
2,263,112	-		Sama_1859	0.60	-0.1
2,263,117	+		Sama_1859	0.60	-0.1
2,263,118	-		Sama_1859	0.60	+0.9
2,263,118	-		Sama_1859	0.60	-1.1
2,263,118	-		Sama_1859	0.60	+0.7
2,263,118	-		Sama_1859	0.60	-1.2
2,263,148	-		Sama_1859	0.62	-1.4
2,263,212	-		Sama_1859	0.66	+0.3
2,263,262	-		Sama_1859	0.69	-1.6
2,263,295	-		Sama_1859	0.71	+0.4
2,263,295	-		Sama_1859	0.71	-0.4
2,263,295	-		Sama_1859	0.71	+1.7
2,263,363	+		Sama_1859	0.75	-0.9
2,263,363	+		Sama_1859	0.75	+0.1
2,263,364	-		Sama_1859	0.75	-2.1
2,263,406	-		Sama_1859	0.78	-2.0
2,263,420	+		Sama_1859	0.79	-2.7
2,263,497	-		Sama_1859	0.84	+0.1
2,263,529	+		Sama_1859	0.86	-0.6
2,263,723	+				+0.1
2,263,724	-				-1.0
2,263,724	-				-1.1
2,263,752	+				+1.1
2,263,752	+				-0.9
2,263,752	+				-1.9
2,263,752	+				-1.6
2,263,753	-				-1.9
2,263,753	-				+0.7
2,263,864	-				+0.7
2,263,881	+				-0.6
2,263,882	-				-0.4
2,263,882	-				-1.7
2,263,882	-				+0.1
2,263,913	+				+0.6
2,263,913	+				-1.1
2,263,960	-		Sama_1860	0.10	-0.6
2,263,967	+		Sama_1860	0.11	+1.1
2,263,967	+		Sama_1860	0.11	+0.3
2,263,967	+		Sama_1860	0.11	+0.2
2,263,967	+		Sama_1860	0.11	+0.6
2,263,967	+		Sama_1860	0.11	-0.9
2,264,101	-		Sama_1860	0.18	-0.3
2,264,101	-		Sama_1860	0.18	+0.4
2,264,208	+		Sama_1860	0.23	-0.0
2,264,209	-		Sama_1860	0.23	-1.0
2,264,215	+		Sama_1860	0.23	+0.7
2,264,216	-		Sama_1860	0.23	-1.2
2,264,216	-		Sama_1860	0.23	+0.4
2,264,274	+		Sama_1860	0.26	+0.6
2,264,274	+		Sama_1860	0.26	-0.3
2,264,275	-		Sama_1860	0.26	-1.1
2,264,295	+		Sama_1860	0.27	-0.0
2,264,340	+		Sama_1860	0.30	-2.0
2,264,341	-		Sama_1860	0.30	-1.1
2,264,379	+		Sama_1860	0.31	-1.2
2,264,379	+		Sama_1860	0.31	-0.8
2,264,379	+		Sama_1860	0.31	+0.5
2,264,481	+		Sama_1860	0.37	-0.2
2,264,601	+		Sama_1860	0.43	+0.4
2,264,601	+		Sama_1860	0.43	+0.1
2,264,602	-		Sama_1860	0.43	-0.1
2,264,641	-		Sama_1860	0.45	+0.9
2,264,641	-		Sama_1860	0.45	-0.1
2,264,641	-		Sama_1860	0.45	-0.7
2,264,666	+		Sama_1860	0.46	-0.9
2,264,666	+		Sama_1860	0.46	-2.0
2,264,667	-		Sama_1860	0.46	-0.9
2,264,667	-		Sama_1860	0.46	-0.6
2,264,705	+		Sama_1860	0.48	+0.1
2,264,705	+		Sama_1860	0.48	+1.7
2,264,706	-		Sama_1860	0.48	+1.1
2,264,739	+		Sama_1860	0.50	-1.0
2,264,740	-		Sama_1860	0.50	-0.1
2,264,772	+		Sama_1860	0.51	-1.6
2,264,773	-		Sama_1860	0.51	-0.0
2,264,773	-		Sama_1860	0.51	-1.4
2,264,817	-		Sama_1860	0.53	-0.3
2,264,827	+		Sama_1860	0.54	+0.1
2,264,868	+		Sama_1860	0.56	-0.1
2,264,868	+		Sama_1860	0.56	+0.2
2,264,902	+		Sama_1860	0.58	+2.5
2,264,932	+		Sama_1860	0.59	-0.3
2,264,934	+		Sama_1860	0.59	-0.3
2,264,935	-		Sama_1860	0.59	-0.4
2,264,935	-		Sama_1860	0.59	-0.9
2,264,935	-		Sama_1860	0.59	+0.7
2,264,962	+		Sama_1860	0.61	-0.5
2,264,963	-		Sama_1860	0.61	-2.2
2,265,082	+		Sama_1860	0.67	-0.3
2,265,083	-		Sama_1860	0.67	-2.6
2,265,083	-		Sama_1860	0.67	+0.8
2,265,083	-		Sama_1860	0.67	-0.6
2,265,137	+		Sama_1860	0.69	-0.4
2,265,137	+		Sama_1860	0.69	-1.4
2,265,215	-		Sama_1860	0.73	-0.0
2,265,267	+		Sama_1860	0.76	+1.3
2,265,267	+		Sama_1860	0.76	+2.1
2,265,267	+		Sama_1860	0.76	-0.6
2,265,267	+		Sama_1860	0.76	+0.7
2,265,268	-		Sama_1860	0.76	-2.1
2,265,286	+		Sama_1860	0.77	-0.6
2,265,287	-		Sama_1860	0.77	-0.8
2,265,290	-		Sama_1860	0.77	+0.5
2,265,303	+		Sama_1860	0.78	-0.4
2,265,303	+		Sama_1860	0.78	-1.3
2,265,427	+		Sama_1860	0.84	-0.0
2,265,428	-		Sama_1860	0.84	+0.1
2,265,520	-		Sama_1860	0.89	+0.3
2,265,537	+		Sama_1860	0.90	-0.9
2,265,537	+		Sama_1860	0.90	-2.2
2,265,583	+				-0.4
2,265,692	+				-0.1
2,265,693	-				+1.7
2,265,844	+				+0.1
2,266,004	+				-0.3
2,266,164	-				-0.3
2,266,168	-				-1.6
2,266,168	-				-1.9
2,266,168	-				-1.4
2,266,342	-		Sama_1861	0.20	+0.6
2,266,372	+		Sama_1861	0.23	-0.8
2,266,372	+		Sama_1861	0.23	+0.5
2,266,372	+		Sama_1861	0.23	-0.9
2,266,373	-		Sama_1861	0.23	-1.3
2,266,401	+		Sama_1861	0.25	-0.9
2,266,401	+		Sama_1861	0.25	-0.4
2,266,402	-		Sama_1861	0.25	+0.7
2,266,402	-		Sama_1861	0.25	-1.1
2,266,492	-		Sama_1861	0.34	-1.1
2,266,553	-		Sama_1861	0.39	-0.4