Experiment: Carbenicillin 0.00195312 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_1457 and Sama_1458 are separated by 45 nucleotides Sama_1458 and Sama_1459 are separated by 16 nucleotides Sama_1459 and Sama_1460 are separated by 95 nucleotides Sama_1460 and Sama_1461 are separated by 186 nucleotides
Sama_1457: Sama_1457 - nitroreductase family protein (RefSeq), at 1,767,332 to 1,767,880
_1457
Sama_1458: Sama_1458 - uncharacterized flavoprotein (RefSeq), at 1,767,926 to 1,768,660
_1458
Sama_1459: Sama_1459 - methyl-accepting chemotaxis protein (RefSeq), at 1,768,677 to 1,769,288
_1459
Sama_1460: Sama_1460 - acetyltransferase (RefSeq), at 1,769,384 to 1,769,893
_1460
Sama_1461: Sama_1461 - SM-20 domain-containing protein (RefSeq), at 1,770,080 to 1,770,703
_1461
Position (kb)
1768
1769
1770 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1767.718 kb on + strand, within Sama_1457 at 1767.719 kb on - strand, within Sama_1457 at 1767.757 kb on - strand, within Sama_1457 at 1767.807 kb on - strand, within Sama_1457 at 1767.878 kb on + strand at 1767.879 kb on - strand at 1767.879 kb on - strand at 1767.888 kb on + strand at 1767.888 kb on + strand at 1767.927 kb on + strand at 1767.995 kb on - strand at 1768.024 kb on - strand, within Sama_1458 at 1768.061 kb on - strand, within Sama_1458 at 1768.101 kb on + strand, within Sama_1458 at 1768.102 kb on - strand, within Sama_1458 at 1768.102 kb on - strand, within Sama_1458 at 1768.212 kb on + strand, within Sama_1458 at 1768.212 kb on + strand, within Sama_1458 at 1768.213 kb on - strand, within Sama_1458 at 1768.213 kb on - strand, within Sama_1458 at 1768.242 kb on + strand, within Sama_1458 at 1768.242 kb on + strand, within Sama_1458 at 1768.301 kb on + strand, within Sama_1458 at 1768.314 kb on + strand, within Sama_1458 at 1768.314 kb on + strand, within Sama_1458 at 1768.371 kb on + strand, within Sama_1458 at 1768.372 kb on - strand, within Sama_1458 at 1768.452 kb on + strand, within Sama_1458 at 1768.453 kb on - strand, within Sama_1458 at 1768.533 kb on - strand, within Sama_1458 at 1768.563 kb on + strand, within Sama_1458 at 1768.564 kb on - strand, within Sama_1458 at 1768.614 kb on + strand at 1768.614 kb on + strand at 1768.614 kb on + strand at 1768.646 kb on + strand at 1768.666 kb on - strand at 1768.706 kb on + strand at 1768.706 kb on + strand at 1768.707 kb on - strand at 1768.710 kb on + strand at 1768.710 kb on + strand at 1768.711 kb on - strand at 1768.866 kb on + strand, within Sama_1459 at 1768.867 kb on - strand, within Sama_1459 at 1768.867 kb on - strand, within Sama_1459 at 1768.867 kb on - strand, within Sama_1459 at 1768.877 kb on + strand, within Sama_1459 at 1768.877 kb on + strand, within Sama_1459 at 1768.878 kb on - strand, within Sama_1459 at 1768.960 kb on + strand, within Sama_1459 at 1769.093 kb on - strand, within Sama_1459 at 1769.111 kb on + strand, within Sama_1459 at 1769.112 kb on - strand, within Sama_1459 at 1769.113 kb on + strand, within Sama_1459 at 1769.113 kb on + strand, within Sama_1459 at 1769.114 kb on - strand, within Sama_1459 at 1769.114 kb on - strand, within Sama_1459 at 1769.254 kb on + strand at 1769.254 kb on + strand at 1769.254 kb on + strand at 1769.254 kb on + strand at 1769.254 kb on + strand at 1769.254 kb on + strand at 1769.254 kb on + strand at 1769.255 kb on - strand at 1769.255 kb on - strand at 1769.255 kb on - strand at 1769.255 kb on - strand at 1769.255 kb on - strand at 1769.255 kb on - strand at 1769.255 kb on - strand at 1769.255 kb on - strand at 1769.280 kb on - strand at 1769.314 kb on + strand at 1769.315 kb on - strand at 1769.315 kb on - strand at 1769.320 kb on - strand at 1769.322 kb on - strand at 1769.355 kb on + strand at 1769.374 kb on - strand at 1769.394 kb on + strand at 1769.394 kb on + strand at 1769.394 kb on + strand at 1769.394 kb on + strand at 1769.395 kb on - strand at 1769.395 kb on - strand at 1769.465 kb on - strand, within Sama_1460 at 1769.528 kb on + strand, within Sama_1460 at 1769.528 kb on + strand, within Sama_1460 at 1769.529 kb on - strand, within Sama_1460 at 1769.529 kb on - strand, within Sama_1460 at 1769.529 kb on - strand, within Sama_1460 at 1769.556 kb on - strand, within Sama_1460 at 1769.578 kb on - strand, within Sama_1460 at 1769.629 kb on + strand, within Sama_1460 at 1769.630 kb on - strand, within Sama_1460 at 1769.661 kb on + strand, within Sama_1460 at 1769.661 kb on + strand, within Sama_1460 at 1769.661 kb on + strand, within Sama_1460 at 1769.661 kb on + strand, within Sama_1460 at 1769.662 kb on - strand, within Sama_1460 at 1769.662 kb on - strand, within Sama_1460 at 1769.662 kb on - strand, within Sama_1460 at 1769.667 kb on - strand, within Sama_1460 at 1769.685 kb on - strand, within Sama_1460 at 1769.687 kb on + strand, within Sama_1460 at 1769.699 kb on + strand, within Sama_1460 at 1769.865 kb on + strand at 1769.937 kb on + strand at 1770.010 kb on + strand at 1770.011 kb on - strand at 1770.011 kb on - strand at 1770.043 kb on - strand at 1770.145 kb on + strand, within Sama_1461 at 1770.146 kb on - strand, within Sama_1461 at 1770.146 kb on - strand, within Sama_1461 at 1770.146 kb on - strand, within Sama_1461 at 1770.146 kb on - strand, within Sama_1461 at 1770.189 kb on + strand, within Sama_1461 at 1770.205 kb on + strand, within Sama_1461
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.00195312 mg/ml remove 1,767,718 + Sama_1457 0.70 -0.2 1,767,719 - Sama_1457 0.70 -0.9 1,767,757 - Sama_1457 0.77 +0.0 1,767,807 - Sama_1457 0.87 -0.2 1,767,878 + -1.0 1,767,879 - +0.2 1,767,879 - -0.6 1,767,888 + +1.8 1,767,888 + -1.2 1,767,927 + -0.2 1,767,995 - -0.8 1,768,024 - Sama_1458 0.13 +0.1 1,768,061 - Sama_1458 0.18 +0.5 1,768,101 + Sama_1458 0.24 +0.1 1,768,102 - Sama_1458 0.24 +0.1 1,768,102 - Sama_1458 0.24 -1.0 1,768,212 + Sama_1458 0.39 +1.2 1,768,212 + Sama_1458 0.39 -0.8 1,768,213 - Sama_1458 0.39 -0.9 1,768,213 - Sama_1458 0.39 -0.2 1,768,242 + Sama_1458 0.43 -1.0 1,768,242 + Sama_1458 0.43 -1.6 1,768,301 + Sama_1458 0.51 -0.1 1,768,314 + Sama_1458 0.53 -1.6 1,768,314 + Sama_1458 0.53 -1.5 1,768,371 + Sama_1458 0.61 -0.5 1,768,372 - Sama_1458 0.61 +0.6 1,768,452 + Sama_1458 0.72 -0.7 1,768,453 - Sama_1458 0.72 +0.0 1,768,533 - Sama_1458 0.83 +0.4 1,768,563 + Sama_1458 0.87 +0.3 1,768,564 - Sama_1458 0.87 +0.2 1,768,614 + +1.4 1,768,614 + -2.2 1,768,614 + +0.1 1,768,646 + +0.8 1,768,666 - -1.5 1,768,706 + +0.2 1,768,706 + -1.5 1,768,707 - +0.6 1,768,710 + -1.1 1,768,710 + +1.8 1,768,711 - +0.8 1,768,866 + Sama_1459 0.31 -1.0 1,768,867 - Sama_1459 0.31 +0.8 1,768,867 - Sama_1459 0.31 -0.2 1,768,867 - Sama_1459 0.31 +0.2 1,768,877 + Sama_1459 0.33 -1.2 1,768,877 + Sama_1459 0.33 -0.2 1,768,878 - Sama_1459 0.33 -2.4 1,768,960 + Sama_1459 0.46 +0.1 1,769,093 - Sama_1459 0.68 +0.0 1,769,111 + Sama_1459 0.71 -0.8 1,769,112 - Sama_1459 0.71 -1.8 1,769,113 + Sama_1459 0.71 -0.7 1,769,113 + Sama_1459 0.71 -0.0 1,769,114 - Sama_1459 0.71 +1.2 1,769,114 - Sama_1459 0.71 -0.5 1,769,254 + +0.5 1,769,254 + -2.0 1,769,254 + -1.0 1,769,254 + -1.2 1,769,254 + +0.5 1,769,254 + -0.1 1,769,254 + +0.4 1,769,255 - +0.0 1,769,255 - +0.5 1,769,255 - -0.8 1,769,255 - +1.8 1,769,255 - -0.6 1,769,255 - -1.5 1,769,255 - +0.6 1,769,255 - -0.2 1,769,280 - -0.5 1,769,314 + -0.3 1,769,315 - -1.4 1,769,315 - +0.2 1,769,320 - +1.4 1,769,322 - -0.2 1,769,355 + -1.5 1,769,374 - +1.2 1,769,394 + +1.8 1,769,394 + -1.0 1,769,394 + -1.0 1,769,394 + -2.0 1,769,395 - -0.1 1,769,395 - -1.0 1,769,465 - Sama_1460 0.16 +0.2 1,769,528 + Sama_1460 0.28 -2.0 1,769,528 + Sama_1460 0.28 -0.2 1,769,529 - Sama_1460 0.28 -0.6 1,769,529 - Sama_1460 0.28 -1.1 1,769,529 - Sama_1460 0.28 -1.8 1,769,556 - Sama_1460 0.34 -0.2 1,769,578 - Sama_1460 0.38 +1.0 1,769,629 + Sama_1460 0.48 +1.1 1,769,630 - Sama_1460 0.48 +0.2 1,769,661 + Sama_1460 0.54 +0.2 1,769,661 + Sama_1460 0.54 -0.3 1,769,661 + Sama_1460 0.54 -1.0 1,769,661 + Sama_1460 0.54 -0.7 1,769,662 - Sama_1460 0.55 -0.4 1,769,662 - Sama_1460 0.55 +1.4 1,769,662 - Sama_1460 0.55 -2.0 1,769,667 - Sama_1460 0.55 -0.8 1,769,685 - Sama_1460 0.59 -0.9 1,769,687 + Sama_1460 0.59 +1.0 1,769,699 + Sama_1460 0.62 -0.8 1,769,865 + +2.8 1,769,937 + -1.4 1,770,010 + -0.9 1,770,011 - +0.8 1,770,011 - -0.7 1,770,043 - -0.4 1,770,145 + Sama_1461 0.10 -1.5 1,770,146 - Sama_1461 0.11 -1.6 1,770,146 - Sama_1461 0.11 +1.2 1,770,146 - Sama_1461 0.11 +0.2 1,770,146 - Sama_1461 0.11 +0.2 1,770,189 + Sama_1461 0.17 +0.6 1,770,205 + Sama_1461 0.20 +0.2
Or see this region's nucleotide sequence