Strain Fitness in Shewanella amazonensis SB2B around Sama_0998

Experiment: Carbenicillin 0.00195312 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 0.00195312 mg/ml
1,209,220	+		Sama_0996	0.83	-0.9
1,209,220	+		Sama_0996	0.83	-1.2
1,209,221	-		Sama_0996	0.83	-0.9
1,209,221	-		Sama_0996	0.83	-0.5
1,209,221	-		Sama_0996	0.83	-0.6
1,209,221	-		Sama_0996	0.83	-0.7
1,209,232	+		Sama_0996	0.85	+1.3
1,209,241	+		Sama_0996	0.86	-1.4
1,209,284	+				-0.3
1,209,284	+				+0.6
1,209,337	+				-0.1
1,209,337	+				+0.2
1,209,338	-				-0.8
1,209,338	-				-0.1
1,209,338	-				+1.2
1,209,361	-				+0.0
1,209,367	+				+0.0
1,209,367	+				+1.6
1,209,367	+				-1.5
1,209,368	-				-1.1
1,209,368	-				-0.5
1,209,368	-				-1.0
1,209,368	-				-0.5
1,209,368	-				-0.6
1,209,368	-				-0.4
1,209,368	-				-0.2
1,209,463	+		Sama_0997	0.17	+0.7
1,209,463	+		Sama_0997	0.17	-1.1
1,209,464	-		Sama_0997	0.17	+0.1
1,209,464	-		Sama_0997	0.17	-0.1
1,209,464	-		Sama_0997	0.17	-1.4
1,209,464	-		Sama_0997	0.17	-0.4
1,209,464	-		Sama_0997	0.17	-1.1
1,209,587	+		Sama_0997	0.32	-1.2
1,209,588	-		Sama_0997	0.32	+0.3
1,209,588	-		Sama_0997	0.32	-1.5
1,209,588	-		Sama_0997	0.32	-0.5
1,209,588	-		Sama_0997	0.32	-0.9
1,209,629	-		Sama_0997	0.37	-0.4
1,209,656	+		Sama_0997	0.40	+0.7
1,209,656	+		Sama_0997	0.40	+0.3
1,209,656	+		Sama_0997	0.40	-1.1
1,209,657	-		Sama_0997	0.40	-1.7
1,209,680	+		Sama_0997	0.43	-1.0
1,209,804	+		Sama_0997	0.57	+0.1
1,209,804	+		Sama_0997	0.57	-0.3
1,209,804	+		Sama_0997	0.57	-1.1
1,209,805	-		Sama_0997	0.58	+0.1
1,209,805	-		Sama_0997	0.58	-2.1
1,209,860	+		Sama_0997	0.64	+0.9
1,209,861	-		Sama_0997	0.64	-0.5
1,209,861	-		Sama_0997	0.64	+0.3
1,209,917	-		Sama_0997	0.71	+0.8
1,210,011	+		Sama_0997	0.82	-1.2
1,210,047	-		Sama_0997	0.86	+1.9
1,210,062	+		Sama_0997	0.88	-1.0
1,210,063	-		Sama_0997	0.88	-0.7
1,210,063	-		Sama_0997	0.88	+0.6
1,210,063	-		Sama_0997	0.88	-0.6
1,210,088	+				+1.0
1,210,089	-				+0.9
1,210,089	-				-1.6
1,210,131	+				+1.0
1,210,132	-				-1.1
1,210,132	-				+1.4
1,210,132	-				+0.7
1,210,159	+				-0.1
1,210,160	-				+0.2
1,210,160	-				-1.4
1,210,173	-				-0.9
1,210,191	-				-0.9
1,210,191	-				+0.5
1,210,191	-				-0.1
1,210,191	-				+1.9
1,210,262	+				-1.7
1,210,262	+				+1.3
1,210,263	-				+1.2
1,210,263	-				-0.3
1,210,263	-				+0.9
1,210,263	-				+0.9
1,210,287	+		Sama_0998	0.12	-1.8
1,210,288	-		Sama_0998	0.12	-1.4
1,210,288	-		Sama_0998	0.12	-0.6
1,210,328	+		Sama_0998	0.16	-0.9
1,210,328	+		Sama_0998	0.16	-1.0
1,210,328	+		Sama_0998	0.16	-0.5
1,210,328	+		Sama_0998	0.16	+0.1
1,210,328	+		Sama_0998	0.16	-1.5
1,210,328	+		Sama_0998	0.16	-1.7
1,210,329	-		Sama_0998	0.16	-0.5
1,210,436	+		Sama_0998	0.26	-1.7
1,210,436	+		Sama_0998	0.26	-0.2
1,210,437	-		Sama_0998	0.27	+0.2
1,210,437	-		Sama_0998	0.27	+0.9
1,210,437	-		Sama_0998	0.27	+0.9
1,210,476	+		Sama_0998	0.30	-1.8
1,210,476	+		Sama_0998	0.30	-0.4
1,210,476	+		Sama_0998	0.30	-1.1
1,210,476	+		Sama_0998	0.30	+3.5
1,210,476	+		Sama_0998	0.30	-0.7
1,210,476	+		Sama_0998	0.30	+0.6
1,210,476	+		Sama_0998	0.30	+0.9
1,210,477	-		Sama_0998	0.31	-2.1
1,210,477	-		Sama_0998	0.31	-0.3
1,210,477	-		Sama_0998	0.31	-1.5
1,210,477	-		Sama_0998	0.31	-1.0
1,210,477	-		Sama_0998	0.31	-1.4
1,210,477	-		Sama_0998	0.31	-0.4
1,210,477	-		Sama_0998	0.31	-0.7
1,210,477	-		Sama_0998	0.31	-1.4
1,210,480	+		Sama_0998	0.31	+0.6
1,210,480	+		Sama_0998	0.31	-0.8
1,210,480	+		Sama_0998	0.31	-1.2
1,210,481	-		Sama_0998	0.31	+0.3
1,210,481	-		Sama_0998	0.31	-2.7
1,210,519	-		Sama_0998	0.35	-1.1
1,210,526	-		Sama_0998	0.35	+0.1
1,210,631	+		Sama_0998	0.46	+0.3
1,210,631	+		Sama_0998	0.46	-0.5
1,210,631	+		Sama_0998	0.46	-0.1
1,210,631	+		Sama_0998	0.46	-0.1
1,210,632	-		Sama_0998	0.46	-0.7
1,210,632	-		Sama_0998	0.46	-1.9
1,210,632	-		Sama_0998	0.46	-0.4
1,210,675	-		Sama_0998	0.50	+1.3
1,210,675	-		Sama_0998	0.50	-0.9
1,210,768	+		Sama_0998	0.60	-1.4
1,210,768	+		Sama_0998	0.60	+1.8
1,210,769	-		Sama_0998	0.60	-0.1
1,210,769	-		Sama_0998	0.60	+0.3
1,210,769	-		Sama_0998	0.60	+1.3
1,210,770	+		Sama_0998	0.60	-2.0
1,210,787	+		Sama_0998	0.61	-1.3
1,210,787	+		Sama_0998	0.61	-0.1
1,210,788	-		Sama_0998	0.62	-0.1
1,210,788	-		Sama_0998	0.62	-2.0
1,210,868	+		Sama_0998	0.70	-0.2
1,210,868	+		Sama_0998	0.70	+1.2
1,210,869	-		Sama_0998	0.70	+0.5
1,210,885	-		Sama_0998	0.71	-0.5
1,210,885	-		Sama_0998	0.71	-0.1
1,210,912	+		Sama_0998	0.74	-0.7
1,210,913	-		Sama_0998	0.74	-0.1
1,210,941	-		Sama_0998	0.77	-0.7
1,210,974	+		Sama_0998	0.80	-0.9
1,210,974	+		Sama_0998	0.80	-0.2
1,210,975	-		Sama_0998	0.80	+1.9
1,210,975	-		Sama_0998	0.80	+0.7
1,210,975	-		Sama_0998	0.80	-1.0
1,210,975	-		Sama_0998	0.80	-1.5
1,211,079	+				-0.5
1,211,079	+				-1.2
1,211,191	+				+1.3
1,211,212	+				+0.2
1,211,213	-				-0.4
1,211,213	-				+0.3
1,211,242	+				+0.3
1,211,242	+				-0.4
1,211,242	+				-0.5
1,211,243	-				-0.5
1,211,243	-				-0.9
1,211,261	+				+1.9
1,211,262	-				-0.7
1,211,273	-				-1.1
1,211,304	-				+0.9
1,211,426	+		Sama_0999	0.21	-0.8
1,211,427	-		Sama_0999	0.22	+0.5
1,211,427	-		Sama_0999	0.22	-0.9
1,211,427	-		Sama_0999	0.22	-0.2
1,211,427	-		Sama_0999	0.22	+1.5
1,211,427	-		Sama_0999	0.22	-0.4
1,211,563	+		Sama_0999	0.48	+0.8
1,211,563	+		Sama_0999	0.48	-0.5
1,211,563	+		Sama_0999	0.48	+0.2
1,211,564	-		Sama_0999	0.48	-1.4
1,211,621	+		Sama_0999	0.59	-0.2
1,211,622	-		Sama_0999	0.60	+1.1
1,211,648	+		Sama_0999	0.65	-0.1
1,211,648	+		Sama_0999	0.65	+0.1
1,211,675	+		Sama_0999	0.70	-1.2
1,211,687	+		Sama_0999	0.72	-1.3
1,211,687	+		Sama_0999	0.72	-0.5
1,211,688	-		Sama_0999	0.73	-0.4
1,211,838	+				-1.9
1,211,839	-				-1.1
1,211,860	+				-2.2
1,211,860	+				+0.2
1,211,886	+				-0.2
1,211,887	-				+0.9
1,211,887	-				+0.1
1,211,887	-				+0.3
1,211,887	-				-1.0
1,211,887	-				-0.5
1,211,888	+				-1.9
1,211,889	-				-1.8
1,211,890	+				-0.7
1,211,937	-				+0.6
1,211,941	+				+2.3
1,211,941	+				+1.9
1,211,942	-				-0.9
1,211,942	-				-1.3
1,211,969	+				+0.1
1,211,970	-				-0.2
1,212,006	-				+0.2
1,212,009	+				+0.7
1,212,009	+				-2.0
1,212,009	+				-0.1
1,212,009	+				-0.5
1,212,009	+				-0.6
1,212,009	+				+0.1
1,212,010	-				+0.4
1,212,010	-				-0.1
1,212,010	-				-0.4
1,212,042	+				-1.5
1,212,043	-				-0.8
1,212,099	+		Sama_1000	0.12	+0.2
1,212,099	+		Sama_1000	0.12	+0.3
1,212,099	+		Sama_1000	0.12	-1.1
1,212,100	-		Sama_1000	0.12	-1.5
1,212,100	-		Sama_1000	0.12	+0.1
1,212,110	+		Sama_1000	0.13	-0.6
1,212,110	+		Sama_1000	0.13	-1.1
1,212,110	+		Sama_1000	0.13	-1.7
1,212,111	-		Sama_1000	0.13	-0.1
1,212,111	-		Sama_1000	0.13	-0.9
1,212,111	-		Sama_1000	0.13	+0.5
1,212,111	-		Sama_1000	0.13	-0.6
1,212,111	-		Sama_1000	0.13	-0.9
1,212,111	-		Sama_1000	0.13	-0.7
1,212,113	+		Sama_1000	0.13	-2.0
1,212,113	+		Sama_1000	0.13	-0.4
1,212,114	-		Sama_1000	0.14	-0.2
1,212,114	-		Sama_1000	0.14	-0.5
1,212,136	+		Sama_1000	0.16	+0.9
1,212,137	-		Sama_1000	0.16	-0.5
1,212,137	-		Sama_1000	0.16	-0.1