Experiment: Carbenicillin 0.00195312 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0767 and Sama_0768 are separated by 53 nucleotides Sama_0768 and Sama_0769 are separated by 253 nucleotides Sama_0769 and Sama_0770 are separated by 45 nucleotides Sama_0770 and Sama_0771 are separated by 7 nucleotides
Sama_0767: Sama_0767 - putative methyl-accepting chemotaxis sensory transducer (RefSeq), at 950,251 to 951,891
_0767
Sama_0768: Sama_0768 - hypothetical protein (RefSeq), at 951,945 to 952,535
_0768
Sama_0769: Sama_0769 - UDP-N-acetylmuramate (RefSeq), at 952,789 to 954,165
_0769
Sama_0770: Sama_0770 - aromatic acid decarboxylase (RefSeq), at 954,211 to 954,852
_0770
Sama_0771: Sama_0771 - hypoxanthine phosphoribosyltransferase (RefSeq), at 954,860 to 955,390
_0771
Position (kb) 952
953
954
955 Strain fitness (log2 ratio) -2
-1
0
1
2 at 951.816 kb on + strand at 951.853 kb on - strand at 951.853 kb on - strand at 951.889 kb on + strand at 951.890 kb on - strand at 951.901 kb on - strand at 951.947 kb on - strand at 951.999 kb on + strand at 952.008 kb on - strand, within Sama_0768 at 952.176 kb on + strand, within Sama_0768 at 952.177 kb on - strand, within Sama_0768 at 952.177 kb on - strand, within Sama_0768 at 952.177 kb on - strand, within Sama_0768 at 952.261 kb on + strand, within Sama_0768 at 952.573 kb on + strand at 952.617 kb on + strand at 952.617 kb on + strand at 952.618 kb on - strand at 952.618 kb on - strand at 952.724 kb on + strand at 952.724 kb on + strand at 952.724 kb on + strand at 952.725 kb on - strand at 952.729 kb on + strand at 952.729 kb on + strand at 952.768 kb on + strand at 952.796 kb on + strand at 952.796 kb on + strand at 952.796 kb on + strand at 952.796 kb on + strand at 952.797 kb on - strand at 952.891 kb on + strand at 952.926 kb on + strand at 953.050 kb on + strand, within Sama_0769 at 953.050 kb on + strand, within Sama_0769 at 953.127 kb on + strand, within Sama_0769 at 953.272 kb on + strand, within Sama_0769 at 953.334 kb on + strand, within Sama_0769 at 953.364 kb on + strand, within Sama_0769 at 953.400 kb on + strand, within Sama_0769 at 953.400 kb on + strand, within Sama_0769 at 953.511 kb on + strand, within Sama_0769 at 953.511 kb on + strand, within Sama_0769 at 953.697 kb on + strand, within Sama_0769 at 953.718 kb on + strand, within Sama_0769 at 953.773 kb on + strand, within Sama_0769 at 953.773 kb on + strand, within Sama_0769 at 953.773 kb on + strand, within Sama_0769 at 953.922 kb on + strand, within Sama_0769 at 953.922 kb on + strand, within Sama_0769 at 953.951 kb on - strand, within Sama_0769 at 953.965 kb on - strand, within Sama_0769 at 954.022 kb on + strand, within Sama_0769 at 954.022 kb on + strand, within Sama_0769 at 954.022 kb on + strand, within Sama_0769 at 954.022 kb on + strand, within Sama_0769 at 954.022 kb on + strand, within Sama_0769 at 954.022 kb on + strand, within Sama_0769 at 954.023 kb on - strand, within Sama_0769 at 954.023 kb on - strand, within Sama_0769 at 954.023 kb on - strand, within Sama_0769 at 954.038 kb on + strand at 954.038 kb on + strand at 954.038 kb on + strand at 954.038 kb on + strand at 954.038 kb on + strand at 954.814 kb on + strand at 954.814 kb on + strand at 954.815 kb on - strand at 954.856 kb on + strand at 954.857 kb on - strand at 954.857 kb on - strand at 954.931 kb on + strand, within Sama_0771 at 954.945 kb on - strand, within Sama_0771 at 954.945 kb on - strand, within Sama_0771 at 954.945 kb on - strand, within Sama_0771 at 955.048 kb on + strand, within Sama_0771 at 955.048 kb on + strand, within Sama_0771 at 955.049 kb on - strand, within Sama_0771 at 955.064 kb on + strand, within Sama_0771 at 955.064 kb on + strand, within Sama_0771 at 955.065 kb on - strand, within Sama_0771 at 955.065 kb on - strand, within Sama_0771 at 955.144 kb on + strand, within Sama_0771 at 955.160 kb on - strand, within Sama_0771
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.00195312 mg/ml remove 951,816 + -1.2 951,853 - +0.6 951,853 - -0.9 951,889 + +0.8 951,890 - -0.3 951,901 - -0.3 951,947 - -0.5 951,999 + -1.5 952,008 - Sama_0768 0.11 -0.6 952,176 + Sama_0768 0.39 -0.6 952,177 - Sama_0768 0.39 -0.6 952,177 - Sama_0768 0.39 -0.4 952,177 - Sama_0768 0.39 -0.3 952,261 + Sama_0768 0.53 -1.0 952,573 + +1.1 952,617 + -1.5 952,617 + -1.0 952,618 - +0.0 952,618 - +1.0 952,724 + -2.0 952,724 + -1.2 952,724 + +0.2 952,725 - -0.8 952,729 + +2.0 952,729 + -0.1 952,768 + -2.6 952,796 + +0.3 952,796 + -0.5 952,796 + -0.1 952,796 + -0.2 952,797 - +0.8 952,891 + -1.1 952,926 + +0.0 953,050 + Sama_0769 0.19 -2.1 953,050 + Sama_0769 0.19 +0.7 953,127 + Sama_0769 0.25 +0.4 953,272 + Sama_0769 0.35 +0.3 953,334 + Sama_0769 0.40 -1.5 953,364 + Sama_0769 0.42 -0.6 953,400 + Sama_0769 0.44 +0.6 953,400 + Sama_0769 0.44 +1.0 953,511 + Sama_0769 0.52 -1.2 953,511 + Sama_0769 0.52 -0.3 953,697 + Sama_0769 0.66 -0.3 953,718 + Sama_0769 0.67 -0.6 953,773 + Sama_0769 0.71 -0.1 953,773 + Sama_0769 0.71 +0.0 953,773 + Sama_0769 0.71 -0.3 953,922 + Sama_0769 0.82 +2.0 953,922 + Sama_0769 0.82 -1.2 953,951 - Sama_0769 0.84 +1.6 953,965 - Sama_0769 0.85 -1.5 954,022 + Sama_0769 0.90 -0.9 954,022 + Sama_0769 0.90 +1.0 954,022 + Sama_0769 0.90 -1.2 954,022 + Sama_0769 0.90 -1.0 954,022 + Sama_0769 0.90 -1.3 954,022 + Sama_0769 0.90 -0.3 954,023 - Sama_0769 0.90 -1.0 954,023 - Sama_0769 0.90 +0.4 954,023 - Sama_0769 0.90 -0.3 954,038 + -1.1 954,038 + +0.2 954,038 + +1.3 954,038 + -2.0 954,038 + +0.2 954,814 + -0.5 954,814 + +0.6 954,815 - +1.0 954,856 + +0.4 954,857 - +0.4 954,857 - +0.8 954,931 + Sama_0771 0.13 -1.3 954,945 - Sama_0771 0.16 -0.1 954,945 - Sama_0771 0.16 -0.6 954,945 - Sama_0771 0.16 +0.1 955,048 + Sama_0771 0.35 -0.3 955,048 + Sama_0771 0.35 -0.1 955,049 - Sama_0771 0.36 +1.4 955,064 + Sama_0771 0.38 +0.6 955,064 + Sama_0771 0.38 -0.7 955,065 - Sama_0771 0.39 -1.2 955,065 - Sama_0771 0.39 -0.6 955,144 + Sama_0771 0.53 +0.5 955,160 - Sama_0771 0.56 -1.2
Or see this region's nucleotide sequence