Experiment: Carbenicillin 0.00195312 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0761 and cobT are separated by 9 nucleotides cobT and Sama_0763 are separated by 13 nucleotides Sama_0763 and Sama_0764 overlap by 4 nucleotides
Sama_0761: Sama_0761 - iron-compound ABC transporter, permease protein (RefSeq), at 944,076 to 945,119
_0761
Sama_0762: cobT - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (RefSeq), at 945,129 to 946,163
cobT
Sama_0763: Sama_0763 - cobalamin 5'-phosphate synthase (RefSeq), at 946,177 to 946,959
_0763
Sama_0764: Sama_0764 - cobinamide kinase/cobinamide phosphate guanylyltransferase (RefSeq), at 946,956 to 947,501
_0764
Position (kb) 945
946
947 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 944.139 kb on - strand at 944.139 kb on - strand at 944.220 kb on + strand, within Sama_0761 at 944.228 kb on + strand, within Sama_0761 at 944.228 kb on + strand, within Sama_0761 at 944.228 kb on + strand, within Sama_0761 at 944.228 kb on + strand, within Sama_0761 at 944.229 kb on - strand, within Sama_0761 at 944.263 kb on - strand, within Sama_0761 at 944.277 kb on - strand, within Sama_0761 at 944.277 kb on - strand, within Sama_0761 at 944.305 kb on + strand, within Sama_0761 at 944.305 kb on + strand, within Sama_0761 at 944.306 kb on - strand, within Sama_0761 at 944.391 kb on + strand, within Sama_0761 at 944.438 kb on - strand, within Sama_0761 at 944.453 kb on + strand, within Sama_0761 at 944.453 kb on + strand, within Sama_0761 at 944.454 kb on - strand, within Sama_0761 at 944.454 kb on - strand, within Sama_0761 at 944.454 kb on - strand, within Sama_0761 at 944.454 kb on - strand, within Sama_0761 at 944.465 kb on - strand, within Sama_0761 at 944.507 kb on + strand, within Sama_0761 at 944.507 kb on + strand, within Sama_0761 at 944.508 kb on - strand, within Sama_0761 at 944.508 kb on - strand, within Sama_0761 at 944.508 kb on - strand, within Sama_0761 at 944.508 kb on - strand, within Sama_0761 at 944.519 kb on - strand, within Sama_0761 at 944.532 kb on - strand, within Sama_0761 at 944.629 kb on + strand, within Sama_0761 at 944.650 kb on + strand, within Sama_0761 at 944.650 kb on + strand, within Sama_0761 at 944.651 kb on - strand, within Sama_0761 at 944.665 kb on + strand, within Sama_0761 at 944.665 kb on + strand, within Sama_0761 at 944.666 kb on - strand, within Sama_0761 at 944.666 kb on - strand, within Sama_0761 at 944.828 kb on + strand, within Sama_0761 at 944.829 kb on - strand, within Sama_0761 at 944.840 kb on + strand, within Sama_0761 at 944.840 kb on + strand, within Sama_0761 at 944.840 kb on + strand, within Sama_0761 at 944.841 kb on - strand, within Sama_0761 at 944.882 kb on - strand, within Sama_0761 at 944.882 kb on - strand, within Sama_0761 at 945.059 kb on + strand at 945.117 kb on + strand at 945.118 kb on - strand at 945.137 kb on + strand at 945.137 kb on + strand at 945.138 kb on - strand at 945.139 kb on + strand at 945.139 kb on + strand at 945.139 kb on + strand at 945.139 kb on + strand at 945.139 kb on + strand at 945.139 kb on + strand at 945.139 kb on + strand at 945.139 kb on + strand at 945.191 kb on + strand at 945.192 kb on - strand at 945.192 kb on - strand at 945.295 kb on + strand, within cobT at 945.295 kb on + strand, within cobT at 945.296 kb on - strand, within cobT at 945.296 kb on - strand, within cobT at 945.296 kb on - strand, within cobT at 945.314 kb on + strand, within cobT at 945.315 kb on - strand, within cobT at 945.332 kb on - strand, within cobT at 945.332 kb on - strand, within cobT at 945.353 kb on - strand, within cobT at 945.449 kb on + strand, within cobT at 945.449 kb on + strand, within cobT at 945.644 kb on + strand, within cobT at 945.644 kb on + strand, within cobT at 945.644 kb on + strand, within cobT at 945.645 kb on - strand, within cobT at 945.645 kb on - strand, within cobT at 945.645 kb on - strand, within cobT at 945.645 kb on - strand, within cobT at 945.645 kb on - strand, within cobT at 945.645 kb on - strand, within cobT at 945.737 kb on + strand, within cobT at 945.738 kb on - strand, within cobT at 945.785 kb on + strand, within cobT at 945.785 kb on + strand, within cobT at 945.786 kb on - strand, within cobT at 945.902 kb on + strand, within cobT at 945.903 kb on - strand, within cobT at 945.903 kb on - strand, within cobT at 945.957 kb on + strand, within cobT at 945.957 kb on + strand, within cobT at 945.957 kb on + strand, within cobT at 945.957 kb on + strand, within cobT at 945.957 kb on + strand, within cobT at 945.957 kb on + strand, within cobT at 945.957 kb on + strand, within cobT at 945.958 kb on - strand, within cobT at 945.958 kb on - strand, within cobT at 945.962 kb on + strand, within cobT at 945.962 kb on + strand, within cobT at 945.962 kb on + strand, within cobT at 945.963 kb on - strand, within cobT at 945.963 kb on - strand, within cobT at 945.963 kb on - strand, within cobT at 945.963 kb on - strand, within cobT at 945.963 kb on - strand, within cobT at 946.013 kb on + strand, within cobT at 946.013 kb on + strand, within cobT at 946.013 kb on + strand, within cobT at 946.013 kb on + strand, within cobT at 946.014 kb on - strand, within cobT at 946.014 kb on - strand, within cobT at 946.014 kb on - strand, within cobT at 946.030 kb on + strand, within cobT at 946.044 kb on - strand, within cobT at 946.061 kb on + strand at 946.062 kb on - strand at 946.062 kb on - strand at 946.062 kb on + strand at 946.110 kb on + strand at 946.111 kb on - strand at 946.145 kb on + strand at 946.153 kb on + strand at 946.154 kb on - strand at 946.154 kb on - strand at 946.176 kb on + strand at 946.176 kb on + strand at 946.176 kb on + strand at 946.176 kb on + strand at 946.176 kb on + strand at 946.177 kb on - strand at 946.177 kb on - strand at 946.177 kb on - strand at 946.177 kb on - strand at 946.177 kb on - strand at 946.177 kb on - strand at 946.177 kb on - strand at 946.177 kb on - strand at 946.177 kb on - strand at 946.188 kb on + strand at 946.230 kb on + strand at 946.250 kb on + strand at 946.262 kb on - strand, within Sama_0763 at 946.278 kb on - strand, within Sama_0763 at 946.294 kb on + strand, within Sama_0763 at 946.294 kb on + strand, within Sama_0763 at 946.294 kb on + strand, within Sama_0763 at 946.359 kb on + strand, within Sama_0763 at 946.359 kb on + strand, within Sama_0763 at 946.485 kb on + strand, within Sama_0763 at 946.485 kb on + strand, within Sama_0763 at 946.485 kb on + strand, within Sama_0763 at 946.485 kb on + strand, within Sama_0763 at 946.485 kb on + strand, within Sama_0763 at 946.486 kb on - strand, within Sama_0763 at 946.522 kb on + strand, within Sama_0763 at 946.522 kb on + strand, within Sama_0763 at 946.523 kb on - strand, within Sama_0763 at 946.523 kb on - strand, within Sama_0763 at 946.629 kb on + strand, within Sama_0763 at 946.630 kb on - strand, within Sama_0763 at 946.630 kb on - strand, within Sama_0763 at 946.634 kb on + strand, within Sama_0763 at 946.634 kb on + strand, within Sama_0763 at 946.635 kb on - strand, within Sama_0763 at 946.656 kb on + strand, within Sama_0763 at 946.657 kb on - strand, within Sama_0763 at 946.657 kb on - strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.671 kb on + strand, within Sama_0763 at 946.672 kb on - strand, within Sama_0763 at 946.672 kb on - strand, within Sama_0763 at 946.672 kb on - strand, within Sama_0763 at 946.672 kb on - strand, within Sama_0763 at 946.675 kb on + strand, within Sama_0763 at 946.675 kb on + strand, within Sama_0763 at 946.675 kb on + strand, within Sama_0763 at 946.675 kb on + strand, within Sama_0763 at 946.675 kb on + strand, within Sama_0763 at 946.675 kb on + strand, within Sama_0763 at 946.675 kb on + strand, within Sama_0763 at 946.675 kb on + strand, within Sama_0763 at 946.676 kb on - strand, within Sama_0763 at 946.676 kb on - strand, within Sama_0763 at 946.676 kb on - strand, within Sama_0763 at 946.676 kb on - strand, within Sama_0763 at 946.676 kb on - strand, within Sama_0763 at 946.676 kb on - strand, within Sama_0763 at 946.676 kb on - strand, within Sama_0763 at 946.676 kb on - strand, within Sama_0763 at 946.749 kb on - strand, within Sama_0763 at 946.808 kb on + strand, within Sama_0763 at 946.809 kb on - strand, within Sama_0763 at 946.875 kb on + strand, within Sama_0763 at 946.924 kb on + strand at 946.924 kb on + strand at 946.924 kb on + strand at 946.924 kb on + strand at 946.924 kb on + strand at 946.924 kb on + strand at 946.925 kb on - strand at 946.925 kb on - strand at 946.937 kb on + strand at 946.938 kb on - strand at 946.938 kb on - strand at 946.938 kb on - strand at 947.043 kb on + strand, within Sama_0764 at 947.044 kb on - strand, within Sama_0764 at 947.044 kb on - strand, within Sama_0764
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.00195312 mg/ml remove 944,139 - -0.1 944,139 - -1.0 944,220 + Sama_0761 0.14 -0.7 944,228 + Sama_0761 0.15 -1.2 944,228 + Sama_0761 0.15 -1.2 944,228 + Sama_0761 0.15 -0.9 944,228 + Sama_0761 0.15 -1.3 944,229 - Sama_0761 0.15 +0.7 944,263 - Sama_0761 0.18 -0.7 944,277 - Sama_0761 0.19 -0.6 944,277 - Sama_0761 0.19 -0.8 944,305 + Sama_0761 0.22 -1.3 944,305 + Sama_0761 0.22 +0.0 944,306 - Sama_0761 0.22 -0.5 944,391 + Sama_0761 0.30 -1.6 944,438 - Sama_0761 0.35 +1.0 944,453 + Sama_0761 0.36 +0.3 944,453 + Sama_0761 0.36 -0.4 944,454 - Sama_0761 0.36 -0.8 944,454 - Sama_0761 0.36 +0.0 944,454 - Sama_0761 0.36 +0.1 944,454 - Sama_0761 0.36 +1.0 944,465 - Sama_0761 0.37 -1.0 944,507 + Sama_0761 0.41 +3.0 944,507 + Sama_0761 0.41 +0.4 944,508 - Sama_0761 0.41 -0.3 944,508 - Sama_0761 0.41 +1.0 944,508 - Sama_0761 0.41 -2.6 944,508 - Sama_0761 0.41 -0.7 944,519 - Sama_0761 0.42 +1.6 944,532 - Sama_0761 0.44 +0.1 944,629 + Sama_0761 0.53 -1.3 944,650 + Sama_0761 0.55 -1.1 944,650 + Sama_0761 0.55 +0.9 944,651 - Sama_0761 0.55 -1.0 944,665 + Sama_0761 0.56 +1.0 944,665 + Sama_0761 0.56 -1.0 944,666 - Sama_0761 0.57 -1.3 944,666 - Sama_0761 0.57 -0.6 944,828 + Sama_0761 0.72 +1.3 944,829 - Sama_0761 0.72 +0.3 944,840 + Sama_0761 0.73 +0.2 944,840 + Sama_0761 0.73 +0.3 944,840 + Sama_0761 0.73 -0.6 944,841 - Sama_0761 0.73 +0.0 944,882 - Sama_0761 0.77 -1.0 944,882 - Sama_0761 0.77 -0.3 945,059 + -1.3 945,117 + -0.1 945,118 - -0.7 945,137 + +1.0 945,137 + +0.5 945,138 - -2.3 945,139 + -1.0 945,139 + -1.5 945,139 + +0.2 945,139 + -1.3 945,139 + +0.7 945,139 + -1.2 945,139 + +0.6 945,139 + -0.8 945,191 + -0.4 945,192 - -1.0 945,192 - +0.4 945,295 + cobT Sama_0762 0.16 +0.6 945,295 + cobT Sama_0762 0.16 -1.9 945,296 - cobT Sama_0762 0.16 +0.4 945,296 - cobT Sama_0762 0.16 -2.5 945,296 - cobT Sama_0762 0.16 +0.3 945,314 + cobT Sama_0762 0.18 +0.0 945,315 - cobT Sama_0762 0.18 -1.4 945,332 - cobT Sama_0762 0.20 +0.4 945,332 - cobT Sama_0762 0.20 -0.4 945,353 - cobT Sama_0762 0.22 -2.7 945,449 + cobT Sama_0762 0.31 -0.7 945,449 + cobT Sama_0762 0.31 -0.3 945,644 + cobT Sama_0762 0.50 +0.5 945,644 + cobT Sama_0762 0.50 +0.7 945,644 + cobT Sama_0762 0.50 -1.0 945,645 - cobT Sama_0762 0.50 -1.5 945,645 - cobT Sama_0762 0.50 -0.3 945,645 - cobT Sama_0762 0.50 +1.6 945,645 - cobT Sama_0762 0.50 +0.2 945,645 - cobT Sama_0762 0.50 +0.2 945,645 - cobT Sama_0762 0.50 -0.1 945,737 + cobT Sama_0762 0.59 +0.0 945,738 - cobT Sama_0762 0.59 +0.3 945,785 + cobT Sama_0762 0.63 -1.2 945,785 + cobT Sama_0762 0.63 -0.2 945,786 - cobT Sama_0762 0.63 -0.8 945,902 + cobT Sama_0762 0.75 +0.2 945,903 - cobT Sama_0762 0.75 +0.0 945,903 - cobT Sama_0762 0.75 +0.0 945,957 + cobT Sama_0762 0.80 -0.7 945,957 + cobT Sama_0762 0.80 -0.6 945,957 + cobT Sama_0762 0.80 +1.1 945,957 + cobT Sama_0762 0.80 -0.5 945,957 + cobT Sama_0762 0.80 -0.6 945,957 + cobT Sama_0762 0.80 +0.4 945,957 + cobT Sama_0762 0.80 -0.6 945,958 - cobT Sama_0762 0.80 -0.6 945,958 - cobT Sama_0762 0.80 -0.1 945,962 + cobT Sama_0762 0.80 -0.9 945,962 + cobT Sama_0762 0.80 -2.2 945,962 + cobT Sama_0762 0.80 -2.2 945,963 - cobT Sama_0762 0.81 +0.6 945,963 - cobT Sama_0762 0.81 -2.0 945,963 - cobT Sama_0762 0.81 +0.0 945,963 - cobT Sama_0762 0.81 -0.6 945,963 - cobT Sama_0762 0.81 -0.5 946,013 + cobT Sama_0762 0.85 +0.3 946,013 + cobT Sama_0762 0.85 +0.2 946,013 + cobT Sama_0762 0.85 -0.6 946,013 + cobT Sama_0762 0.85 +1.0 946,014 - cobT Sama_0762 0.86 -2.0 946,014 - cobT Sama_0762 0.86 -1.0 946,014 - cobT Sama_0762 0.86 -0.7 946,030 + cobT Sama_0762 0.87 -0.6 946,044 - cobT Sama_0762 0.88 -1.0 946,061 + -0.1 946,062 - -0.8 946,062 - +0.4 946,062 + +0.4 946,110 + -0.4 946,111 - -0.3 946,145 + -1.0 946,153 + +1.1 946,154 - +0.7 946,154 - +0.1 946,176 + -0.2 946,176 + -1.4 946,176 + -1.2 946,176 + +0.9 946,176 + -2.0 946,177 - -1.5 946,177 - -0.3 946,177 - -0.6 946,177 - -0.9 946,177 - -2.2 946,177 - +0.7 946,177 - +0.3 946,177 - -1.6 946,177 - -1.9 946,188 + +0.9 946,230 + -1.2 946,250 + +0.0 946,262 - Sama_0763 0.11 +0.4 946,278 - Sama_0763 0.13 -0.7 946,294 + Sama_0763 0.15 -1.9 946,294 + Sama_0763 0.15 -0.2 946,294 + Sama_0763 0.15 +1.7 946,359 + Sama_0763 0.23 -1.9 946,359 + Sama_0763 0.23 +2.4 946,485 + Sama_0763 0.39 -0.2 946,485 + Sama_0763 0.39 -0.6 946,485 + Sama_0763 0.39 -0.3 946,485 + Sama_0763 0.39 -1.3 946,485 + Sama_0763 0.39 -1.9 946,486 - Sama_0763 0.39 +1.0 946,522 + Sama_0763 0.44 +1.0 946,522 + Sama_0763 0.44 -0.2 946,523 - Sama_0763 0.44 -0.5 946,523 - Sama_0763 0.44 -1.7 946,629 + Sama_0763 0.58 -1.6 946,630 - Sama_0763 0.58 -1.6 946,630 - Sama_0763 0.58 -1.0 946,634 + Sama_0763 0.58 +2.0 946,634 + Sama_0763 0.58 +0.0 946,635 - Sama_0763 0.58 +0.3 946,656 + Sama_0763 0.61 +2.0 946,657 - Sama_0763 0.61 +0.1 946,657 - Sama_0763 0.61 -1.3 946,671 + Sama_0763 0.63 -2.1 946,671 + Sama_0763 0.63 +1.7 946,671 + Sama_0763 0.63 +0.7 946,671 + Sama_0763 0.63 -0.4 946,671 + Sama_0763 0.63 +0.3 946,671 + Sama_0763 0.63 -0.1 946,671 + Sama_0763 0.63 +1.4 946,671 + Sama_0763 0.63 -1.4 946,671 + Sama_0763 0.63 -0.3 946,671 + Sama_0763 0.63 -1.9 946,672 - Sama_0763 0.63 -1.4 946,672 - Sama_0763 0.63 -0.1 946,672 - Sama_0763 0.63 -0.6 946,672 - Sama_0763 0.63 -0.8 946,675 + Sama_0763 0.64 -0.0 946,675 + Sama_0763 0.64 -0.1 946,675 + Sama_0763 0.64 +2.0 946,675 + Sama_0763 0.64 +0.0 946,675 + Sama_0763 0.64 -0.3 946,675 + Sama_0763 0.64 -1.6 946,675 + Sama_0763 0.64 +0.2 946,675 + Sama_0763 0.64 -3.5 946,676 - Sama_0763 0.64 -0.7 946,676 - Sama_0763 0.64 +0.6 946,676 - Sama_0763 0.64 +1.2 946,676 - Sama_0763 0.64 -1.0 946,676 - Sama_0763 0.64 -1.3 946,676 - Sama_0763 0.64 +0.4 946,676 - Sama_0763 0.64 -1.0 946,676 - Sama_0763 0.64 -1.7 946,749 - Sama_0763 0.73 +0.0 946,808 + Sama_0763 0.81 -0.2 946,809 - Sama_0763 0.81 +1.2 946,875 + Sama_0763 0.89 +0.0 946,924 + -1.2 946,924 + -1.3 946,924 + -1.0 946,924 + -0.0 946,924 + +0.8 946,924 + -0.2 946,925 - -0.4 946,925 - -0.6 946,937 + -0.4 946,938 - -3.0 946,938 - -1.9 946,938 - -1.8 947,043 + Sama_0764 0.16 +0.7 947,044 - Sama_0764 0.16 -1.2 947,044 - Sama_0764 0.16 -1.3
Or see this region's nucleotide sequence