Strain Fitness in Shewanella amazonensis SB2B around Sama_0709

Experiment: Carbenicillin 0.00195312 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0708 and Sama_0709 overlap by 8 nucleotidesSama_0709 and Sama_0710 are separated by 8 nucleotidesSama_0710 and Sama_0711 are separated by 1 nucleotides Sama_0708: Sama_0708 - type II/IV secretion system protein E (RefSeq), at 870,224 to 871,993 _0708 Sama_0709: Sama_0709 - putative type II secretion system protein F (RefSeq), at 871,986 to 872,837 _0709 Sama_0710: Sama_0710 - putative type II secretion system protein F (RefSeq), at 872,846 to 873,709 _0710 Sama_0711: Sama_0711 - hypothetical protein (RefSeq), at 873,711 to 874,055 _0711 Position (kb) 871 872 873Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 871.022 kb on + strand, within Sama_0708at 871.022 kb on + strand, within Sama_0708at 871.022 kb on + strand, within Sama_0708at 871.022 kb on + strand, within Sama_0708at 871.023 kb on - strand, within Sama_0708at 871.023 kb on - strand, within Sama_0708at 871.023 kb on - strand, within Sama_0708at 871.023 kb on - strand, within Sama_0708at 871.034 kb on - strand, within Sama_0708at 871.034 kb on - strand, within Sama_0708at 871.102 kb on + strand, within Sama_0708at 871.195 kb on + strand, within Sama_0708at 871.196 kb on - strand, within Sama_0708at 871.196 kb on - strand, within Sama_0708at 871.208 kb on - strand, within Sama_0708at 871.213 kb on + strand, within Sama_0708at 871.376 kb on - strand, within Sama_0708at 871.376 kb on - strand, within Sama_0708at 871.430 kb on + strand, within Sama_0708at 871.430 kb on + strand, within Sama_0708at 871.431 kb on - strand, within Sama_0708at 871.431 kb on - strand, within Sama_0708at 871.651 kb on + strand, within Sama_0708at 871.652 kb on - strand, within Sama_0708at 871.652 kb on - strand, within Sama_0708at 871.738 kb on + strand, within Sama_0708at 871.739 kb on - strand, within Sama_0708at 871.743 kb on + strand, within Sama_0708at 871.743 kb on + strand, within Sama_0708at 871.743 kb on + strand, within Sama_0708at 871.743 kb on + strand, within Sama_0708at 871.743 kb on + strand, within Sama_0708at 871.743 kb on + strand, within Sama_0708at 871.744 kb on - strand, within Sama_0708at 871.744 kb on - strand, within Sama_0708at 871.781 kb on - strand, within Sama_0708at 871.819 kb on + strandat 871.820 kb on - strandat 871.839 kb on + strandat 871.839 kb on + strandat 871.839 kb on + strandat 871.892 kb on + strandat 871.892 kb on + strandat 871.892 kb on + strandat 871.892 kb on + strandat 871.906 kb on + strandat 871.907 kb on - strandat 871.922 kb on + strandat 871.923 kb on - strandat 871.963 kb on + strandat 871.963 kb on + strandat 872.096 kb on + strand, within Sama_0709at 872.096 kb on + strand, within Sama_0709at 872.097 kb on - strand, within Sama_0709at 872.227 kb on + strand, within Sama_0709at 872.227 kb on + strand, within Sama_0709at 872.228 kb on - strand, within Sama_0709at 872.233 kb on + strand, within Sama_0709at 872.233 kb on + strand, within Sama_0709at 872.234 kb on - strand, within Sama_0709at 872.234 kb on - strand, within Sama_0709at 872.280 kb on + strand, within Sama_0709at 872.321 kb on - strand, within Sama_0709at 872.391 kb on - strand, within Sama_0709at 872.490 kb on + strand, within Sama_0709at 872.491 kb on - strand, within Sama_0709at 872.665 kb on + strand, within Sama_0709at 872.665 kb on + strand, within Sama_0709at 872.665 kb on + strand, within Sama_0709at 872.665 kb on + strand, within Sama_0709at 872.665 kb on + strand, within Sama_0709at 872.665 kb on + strand, within Sama_0709at 872.665 kb on + strand, within Sama_0709at 872.665 kb on + strand, within Sama_0709at 872.665 kb on + strand, within Sama_0709at 872.665 kb on + strand, within Sama_0709at 872.666 kb on - strand, within Sama_0709at 872.666 kb on - strand, within Sama_0709at 872.666 kb on - strand, within Sama_0709at 872.666 kb on - strand, within Sama_0709at 872.666 kb on - strand, within Sama_0709at 872.706 kb on + strand, within Sama_0709at 872.706 kb on + strand, within Sama_0709at 872.707 kb on - strand, within Sama_0709at 872.711 kb on + strand, within Sama_0709at 872.712 kb on - strand, within Sama_0709at 872.712 kb on - strand, within Sama_0709at 872.712 kb on - strand, within Sama_0709at 872.712 kb on - strand, within Sama_0709at 872.722 kb on + strand, within Sama_0709at 872.723 kb on - strand, within Sama_0709at 872.768 kb on - strandat 872.799 kb on + strandat 872.799 kb on + strandat 872.799 kb on + strandat 872.799 kb on + strandat 872.800 kb on - strandat 872.830 kb on - strandat 872.835 kb on + strandat 872.835 kb on + strandat 872.835 kb on + strandat 872.835 kb on + strandat 872.836 kb on - strandat 872.836 kb on - strandat 872.870 kb on + strandat 872.870 kb on + strandat 872.871 kb on - strandat 872.871 kb on - strandat 872.871 kb on - strandat 872.916 kb on - strandat 872.947 kb on + strand, within Sama_0710at 873.009 kb on - strand, within Sama_0710at 873.009 kb on - strand, within Sama_0710at 873.035 kb on + strand, within Sama_0710at 873.035 kb on + strand, within Sama_0710at 873.036 kb on - strand, within Sama_0710at 873.036 kb on - strand, within Sama_0710at 873.047 kb on - strand, within Sama_0710at 873.066 kb on + strand, within Sama_0710at 873.075 kb on + strand, within Sama_0710at 873.080 kb on + strand, within Sama_0710at 873.080 kb on + strand, within Sama_0710at 873.080 kb on + strand, within Sama_0710at 873.080 kb on + strand, within Sama_0710at 873.081 kb on - strand, within Sama_0710at 873.101 kb on + strand, within Sama_0710at 873.101 kb on + strand, within Sama_0710at 873.101 kb on + strand, within Sama_0710at 873.102 kb on - strand, within Sama_0710at 873.102 kb on - strand, within Sama_0710at 873.102 kb on - strand, within Sama_0710at 873.102 kb on - strand, within Sama_0710at 873.102 kb on - strand, within Sama_0710at 873.102 kb on - strand, within Sama_0710at 873.102 kb on - strand, within Sama_0710at 873.102 kb on - strand, within Sama_0710at 873.142 kb on + strand, within Sama_0710at 873.143 kb on - strand, within Sama_0710at 873.143 kb on - strand, within Sama_0710at 873.143 kb on - strand, within Sama_0710at 873.143 kb on - strand, within Sama_0710at 873.143 kb on - strand, within Sama_0710at 873.177 kb on + strand, within Sama_0710at 873.178 kb on - strand, within Sama_0710at 873.188 kb on + strand, within Sama_0710at 873.188 kb on + strand, within Sama_0710at 873.188 kb on + strand, within Sama_0710at 873.188 kb on + strand, within Sama_0710at 873.189 kb on - strand, within Sama_0710at 873.189 kb on - strand, within Sama_0710at 873.189 kb on - strand, within Sama_0710at 873.189 kb on - strand, within Sama_0710at 873.246 kb on + strand, within Sama_0710at 873.247 kb on - strand, within Sama_0710at 873.253 kb on + strand, within Sama_0710at 873.254 kb on - strand, within Sama_0710at 873.290 kb on + strand, within Sama_0710at 873.291 kb on - strand, within Sama_0710at 873.291 kb on - strand, within Sama_0710at 873.395 kb on + strand, within Sama_0710at 873.424 kb on + strand, within Sama_0710at 873.425 kb on - strand, within Sama_0710at 873.471 kb on + strand, within Sama_0710at 873.471 kb on + strand, within Sama_0710at 873.472 kb on - strand, within Sama_0710at 873.472 kb on - strand, within Sama_0710at 873.472 kb on - strand, within Sama_0710at 873.482 kb on - strand, within Sama_0710at 873.482 kb on - strand, within Sama_0710at 873.482 kb on - strand, within Sama_0710at 873.536 kb on + strand, within Sama_0710at 873.536 kb on + strand, within Sama_0710at 873.537 kb on - strand, within Sama_0710at 873.635 kb on - strandat 873.643 kb on + strandat 873.644 kb on - strandat 873.761 kb on - strand, within Sama_0711at 873.761 kb on - strand, within Sama_0711at 873.761 kb on - strand, within Sama_0711at 873.761 kb on - strand, within Sama_0711

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 0.00195312 mg/ml
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871,022 + Sama_0708 0.45 +0.1
871,022 + Sama_0708 0.45 -0.6
871,022 + Sama_0708 0.45 +0.6
871,022 + Sama_0708 0.45 -2.4
871,023 - Sama_0708 0.45 +0.0
871,023 - Sama_0708 0.45 -1.4
871,023 - Sama_0708 0.45 +1.0
871,023 - Sama_0708 0.45 +0.0
871,034 - Sama_0708 0.46 -0.6
871,034 - Sama_0708 0.46 -0.5
871,102 + Sama_0708 0.50 -0.5
871,195 + Sama_0708 0.55 -1.5
871,196 - Sama_0708 0.55 -0.8
871,196 - Sama_0708 0.55 -1.0
871,208 - Sama_0708 0.56 +0.1
871,213 + Sama_0708 0.56 -0.9
871,376 - Sama_0708 0.65 +0.0
871,376 - Sama_0708 0.65 -1.3
871,430 + Sama_0708 0.68 -0.7
871,430 + Sama_0708 0.68 -1.3
871,431 - Sama_0708 0.68 +1.4
871,431 - Sama_0708 0.68 +1.0
871,651 + Sama_0708 0.81 -1.8
871,652 - Sama_0708 0.81 -2.4
871,652 - Sama_0708 0.81 +1.6
871,738 + Sama_0708 0.86 -1.1
871,739 - Sama_0708 0.86 +0.3
871,743 + Sama_0708 0.86 -0.4
871,743 + Sama_0708 0.86 -0.3
871,743 + Sama_0708 0.86 -1.3
871,743 + Sama_0708 0.86 +0.2
871,743 + Sama_0708 0.86 -0.7
871,743 + Sama_0708 0.86 -0.4
871,744 - Sama_0708 0.86 +0.2
871,744 - Sama_0708 0.86 +0.0
871,781 - Sama_0708 0.88 -0.6
871,819 + +0.9
871,820 - -2.6
871,839 + +0.6
871,839 + -0.9
871,839 + -0.1
871,892 + +0.7
871,892 + -0.3
871,892 + -1.3
871,892 + -1.1
871,906 + +1.0
871,907 - -0.1
871,922 + -0.2
871,923 - +2.0
871,963 + +0.3
871,963 + +0.9
872,096 + Sama_0709 0.13 +0.5
872,096 + Sama_0709 0.13 -1.9
872,097 - Sama_0709 0.13 -0.3
872,227 + Sama_0709 0.28 -0.8
872,227 + Sama_0709 0.28 -0.3
872,228 - Sama_0709 0.28 -1.8
872,233 + Sama_0709 0.29 -1.4
872,233 + Sama_0709 0.29 -0.7
872,234 - Sama_0709 0.29 -1.7
872,234 - Sama_0709 0.29 -0.1
872,280 + Sama_0709 0.35 -0.8
872,321 - Sama_0709 0.39 +0.1
872,391 - Sama_0709 0.48 +0.7
872,490 + Sama_0709 0.59 +0.3
872,491 - Sama_0709 0.59 -1.4
872,665 + Sama_0709 0.80 -0.7
872,665 + Sama_0709 0.80 -0.6
872,665 + Sama_0709 0.80 -0.4
872,665 + Sama_0709 0.80 -0.6
872,665 + Sama_0709 0.80 -1.6
872,665 + Sama_0709 0.80 -0.7
872,665 + Sama_0709 0.80 -0.3
872,665 + Sama_0709 0.80 -1.3
872,665 + Sama_0709 0.80 -0.1
872,665 + Sama_0709 0.80 +1.0
872,666 - Sama_0709 0.80 +0.9
872,666 - Sama_0709 0.80 -1.2
872,666 - Sama_0709 0.80 -1.1
872,666 - Sama_0709 0.80 -0.8
872,666 - Sama_0709 0.80 +0.4
872,706 + Sama_0709 0.85 -1.7
872,706 + Sama_0709 0.85 +1.0
872,707 - Sama_0709 0.85 +1.0
872,711 + Sama_0709 0.85 -0.1
872,712 - Sama_0709 0.85 -0.3
872,712 - Sama_0709 0.85 -0.7
872,712 - Sama_0709 0.85 +0.9
872,712 - Sama_0709 0.85 -1.0
872,722 + Sama_0709 0.86 -0.3
872,723 - Sama_0709 0.87 -0.4
872,768 - -0.6
872,799 + -0.4
872,799 + +0.7
872,799 + -2.8
872,799 + +0.4
872,800 - -0.8
872,830 - -0.7
872,835 + -0.5
872,835 + +0.5
872,835 + -0.5
872,835 + -0.3
872,836 - -2.1
872,836 - -2.5
872,870 + -0.7
872,870 + -0.6
872,871 - -2.0
872,871 - +0.2
872,871 - -0.8
872,916 - -1.3
872,947 + Sama_0710 0.12 +2.0
873,009 - Sama_0710 0.19 -0.1
873,009 - Sama_0710 0.19 -0.8
873,035 + Sama_0710 0.22 -1.2
873,035 + Sama_0710 0.22 +0.7
873,036 - Sama_0710 0.22 -2.5
873,036 - Sama_0710 0.22 -0.4
873,047 - Sama_0710 0.23 -0.3
873,066 + Sama_0710 0.25 -0.6
873,075 + Sama_0710 0.27 +0.4
873,080 + Sama_0710 0.27 -0.6
873,080 + Sama_0710 0.27 +0.8
873,080 + Sama_0710 0.27 -1.6
873,080 + Sama_0710 0.27 +1.6
873,081 - Sama_0710 0.27 +0.3
873,101 + Sama_0710 0.30 -2.3
873,101 + Sama_0710 0.30 -0.3
873,101 + Sama_0710 0.30 -0.8
873,102 - Sama_0710 0.30 -1.9
873,102 - Sama_0710 0.30 +0.4
873,102 - Sama_0710 0.30 +0.3
873,102 - Sama_0710 0.30 -0.6
873,102 - Sama_0710 0.30 -0.2
873,102 - Sama_0710 0.30 +0.4
873,102 - Sama_0710 0.30 -0.2
873,102 - Sama_0710 0.30 -0.1
873,142 + Sama_0710 0.34 -0.4
873,143 - Sama_0710 0.34 +0.4
873,143 - Sama_0710 0.34 -0.5
873,143 - Sama_0710 0.34 +1.0
873,143 - Sama_0710 0.34 +0.6
873,143 - Sama_0710 0.34 -0.6
873,177 + Sama_0710 0.38 -0.2
873,178 - Sama_0710 0.38 +0.6
873,188 + Sama_0710 0.40 +0.4
873,188 + Sama_0710 0.40 -0.4
873,188 + Sama_0710 0.40 -0.1
873,188 + Sama_0710 0.40 +0.2
873,189 - Sama_0710 0.40 +0.3
873,189 - Sama_0710 0.40 +0.1
873,189 - Sama_0710 0.40 +0.2
873,189 - Sama_0710 0.40 -0.5
873,246 + Sama_0710 0.46 -0.3
873,247 - Sama_0710 0.46 +1.0
873,253 + Sama_0710 0.47 -0.9
873,254 - Sama_0710 0.47 -0.4
873,290 + Sama_0710 0.51 -0.7
873,291 - Sama_0710 0.52 -0.5
873,291 - Sama_0710 0.52 -0.1
873,395 + Sama_0710 0.64 -1.0
873,424 + Sama_0710 0.67 -0.2
873,425 - Sama_0710 0.67 -0.7
873,471 + Sama_0710 0.72 -0.7
873,471 + Sama_0710 0.72 +0.9
873,472 - Sama_0710 0.72 -2.9
873,472 - Sama_0710 0.72 -0.1
873,472 - Sama_0710 0.72 -0.0
873,482 - Sama_0710 0.74 +0.4
873,482 - Sama_0710 0.74 -0.3
873,482 - Sama_0710 0.74 +4.0
873,536 + Sama_0710 0.80 -0.7
873,536 + Sama_0710 0.80 +1.0
873,537 - Sama_0710 0.80 +0.5
873,635 - -2.8
873,643 + +2.0
873,644 - -0.8
873,761 - Sama_0711 0.14 +2.0
873,761 - Sama_0711 0.14 -1.0
873,761 - Sama_0711 0.14 -1.2
873,761 - Sama_0711 0.14 -0.1

Or see this region's nucleotide sequence