Experiment: Carbenicillin 0.00195312 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0492 and Sama_0493 are separated by 633 nucleotides Sama_0493 and Sama_0494 are separated by 29 nucleotides
Sama_0492: Sama_0492 - sodium/proline symporter (RefSeq), at 604,192 to 605,688
_0492
Sama_0493: Sama_0493 - transcriptional regulator (RefSeq), at 606,322 to 606,675
_0493
Sama_0494: Sama_0494 - glyceraldehyde-3-phosphate dehydrogenase (RefSeq), at 606,705 to 607,718
_0494
Position (kb) 606
607 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 605.391 kb on + strand, within Sama_0492 at 605.424 kb on - strand, within Sama_0492 at 605.424 kb on - strand, within Sama_0492 at 605.424 kb on - strand, within Sama_0492 at 605.474 kb on + strand, within Sama_0492 at 605.484 kb on + strand, within Sama_0492 at 605.484 kb on + strand, within Sama_0492 at 605.586 kb on + strand at 605.586 kb on + strand at 605.586 kb on + strand at 605.586 kb on + strand at 605.586 kb on + strand at 605.587 kb on - strand at 605.587 kb on - strand at 605.587 kb on - strand at 605.587 kb on - strand at 605.588 kb on + strand at 605.588 kb on + strand at 605.589 kb on - strand at 605.589 kb on - strand at 605.589 kb on - strand at 605.589 kb on - strand at 605.613 kb on + strand at 605.613 kb on + strand at 605.614 kb on - strand at 605.632 kb on + strand at 605.655 kb on - strand at 605.671 kb on - strand at 605.751 kb on - strand at 605.755 kb on - strand at 605.755 kb on - strand at 605.931 kb on + strand at 605.985 kb on + strand at 605.988 kb on + strand at 605.988 kb on + strand at 605.988 kb on + strand at 605.992 kb on + strand at 605.992 kb on + strand at 605.997 kb on + strand at 606.192 kb on + strand at 606.193 kb on - strand at 606.215 kb on + strand at 606.235 kb on + strand at 606.235 kb on + strand at 606.236 kb on - strand at 606.236 kb on - strand at 606.249 kb on + strand at 606.249 kb on + strand at 606.271 kb on + strand at 606.272 kb on - strand at 606.272 kb on - strand at 606.272 kb on - strand at 606.272 kb on - strand at 606.286 kb on - strand at 606.291 kb on + strand at 606.292 kb on - strand at 606.305 kb on + strand at 606.319 kb on + strand at 606.319 kb on + strand at 606.319 kb on + strand at 606.319 kb on + strand at 606.319 kb on + strand at 606.319 kb on + strand at 606.319 kb on + strand at 606.319 kb on + strand at 606.319 kb on + strand at 606.319 kb on + strand at 606.319 kb on + strand at 606.319 kb on + strand at 606.319 kb on + strand at 606.319 kb on + strand at 606.320 kb on - strand at 606.320 kb on - strand at 606.320 kb on - strand at 606.320 kb on - strand at 606.320 kb on - strand at 606.320 kb on - strand at 606.320 kb on - strand at 606.320 kb on - strand at 606.320 kb on - strand at 606.320 kb on - strand at 606.320 kb on - strand at 606.320 kb on - strand at 606.347 kb on + strand at 606.347 kb on + strand at 606.347 kb on + strand at 606.347 kb on + strand at 606.347 kb on + strand at 606.347 kb on + strand at 606.347 kb on + strand at 606.348 kb on - strand at 606.348 kb on - strand at 606.348 kb on - strand at 606.378 kb on + strand, within Sama_0493 at 606.387 kb on + strand, within Sama_0493 at 606.387 kb on + strand, within Sama_0493 at 606.388 kb on - strand, within Sama_0493 at 606.396 kb on + strand, within Sama_0493 at 606.396 kb on + strand, within Sama_0493 at 606.397 kb on - strand, within Sama_0493 at 606.397 kb on - strand, within Sama_0493 at 606.397 kb on - strand, within Sama_0493 at 606.450 kb on + strand, within Sama_0493 at 606.451 kb on - strand, within Sama_0493 at 606.451 kb on - strand, within Sama_0493 at 606.482 kb on + strand, within Sama_0493 at 606.482 kb on + strand, within Sama_0493 at 606.483 kb on - strand, within Sama_0493 at 606.483 kb on - strand, within Sama_0493 at 606.483 kb on - strand, within Sama_0493 at 606.539 kb on - strand, within Sama_0493 at 606.539 kb on - strand, within Sama_0493 at 606.539 kb on - strand, within Sama_0493 at 606.542 kb on - strand, within Sama_0493 at 606.673 kb on + strand at 606.674 kb on - strand at 606.710 kb on + strand at 606.711 kb on - strand at 606.716 kb on + strand at 606.717 kb on - strand at 606.717 kb on - strand at 606.717 kb on - strand at 606.717 kb on - strand at 606.717 kb on - strand at 606.721 kb on + strand at 606.721 kb on + strand at 606.725 kb on + strand at 606.725 kb on + strand at 606.725 kb on + strand at 606.725 kb on + strand at 606.725 kb on + strand at 606.726 kb on - strand at 606.726 kb on - strand at 606.760 kb on + strand at 606.760 kb on + strand at 606.796 kb on + strand at 606.796 kb on + strand at 606.796 kb on + strand at 606.796 kb on + strand at 606.796 kb on + strand at 606.797 kb on - strand at 606.797 kb on - strand at 606.800 kb on + strand at 606.800 kb on + strand at 606.800 kb on + strand at 606.800 kb on + strand at 606.800 kb on + strand at 606.800 kb on + strand at 606.800 kb on + strand at 606.801 kb on - strand at 606.801 kb on - strand at 606.801 kb on - strand at 606.801 kb on - strand at 606.801 kb on - strand at 606.902 kb on + strand, within Sama_0494 at 606.902 kb on + strand, within Sama_0494 at 606.936 kb on - strand, within Sama_0494 at 606.936 kb on - strand, within Sama_0494 at 606.936 kb on - strand, within Sama_0494 at 607.029 kb on + strand, within Sama_0494 at 607.029 kb on + strand, within Sama_0494 at 607.029 kb on + strand, within Sama_0494 at 607.029 kb on + strand, within Sama_0494 at 607.030 kb on - strand, within Sama_0494 at 607.030 kb on - strand, within Sama_0494 at 607.030 kb on - strand, within Sama_0494 at 607.030 kb on - strand, within Sama_0494 at 607.030 kb on - strand, within Sama_0494 at 607.030 kb on - strand, within Sama_0494 at 607.030 kb on - strand, within Sama_0494 at 607.091 kb on + strand, within Sama_0494 at 607.092 kb on - strand, within Sama_0494 at 607.122 kb on + strand, within Sama_0494 at 607.122 kb on + strand, within Sama_0494 at 607.122 kb on + strand, within Sama_0494 at 607.122 kb on + strand, within Sama_0494 at 607.122 kb on + strand, within Sama_0494 at 607.122 kb on + strand, within Sama_0494 at 607.122 kb on + strand, within Sama_0494 at 607.122 kb on + strand, within Sama_0494 at 607.123 kb on - strand, within Sama_0494 at 607.123 kb on - strand, within Sama_0494 at 607.123 kb on - strand, within Sama_0494 at 607.123 kb on - strand, within Sama_0494 at 607.123 kb on - strand, within Sama_0494 at 607.123 kb on - strand, within Sama_0494 at 607.123 kb on - strand, within Sama_0494 at 607.123 kb on - strand, within Sama_0494 at 607.123 kb on - strand, within Sama_0494 at 607.123 kb on - strand, within Sama_0494 at 607.124 kb on + strand, within Sama_0494 at 607.124 kb on + strand, within Sama_0494 at 607.124 kb on + strand, within Sama_0494 at 607.144 kb on + strand, within Sama_0494 at 607.148 kb on + strand, within Sama_0494 at 607.148 kb on + strand, within Sama_0494 at 607.148 kb on + strand, within Sama_0494 at 607.149 kb on - strand, within Sama_0494 at 607.149 kb on - strand, within Sama_0494 at 607.149 kb on - strand, within Sama_0494 at 607.149 kb on - strand, within Sama_0494 at 607.149 kb on - strand, within Sama_0494 at 607.196 kb on + strand, within Sama_0494 at 607.313 kb on + strand, within Sama_0494 at 607.314 kb on - strand, within Sama_0494 at 607.322 kb on + strand, within Sama_0494 at 607.323 kb on - strand, within Sama_0494 at 607.323 kb on - strand, within Sama_0494 at 607.355 kb on + strand, within Sama_0494 at 607.355 kb on + strand, within Sama_0494 at 607.362 kb on - strand, within Sama_0494 at 607.560 kb on + strand, within Sama_0494 at 607.560 kb on + strand, within Sama_0494 at 607.588 kb on + strand, within Sama_0494 at 607.588 kb on + strand, within Sama_0494 at 607.588 kb on + strand, within Sama_0494 at 607.588 kb on + strand, within Sama_0494 at 607.588 kb on + strand, within Sama_0494 at 607.588 kb on + strand, within Sama_0494 at 607.588 kb on + strand, within Sama_0494 at 607.588 kb on + strand, within Sama_0494 at 607.588 kb on + strand, within Sama_0494 at 607.588 kb on + strand, within Sama_0494 at 607.588 kb on + strand, within Sama_0494 at 607.588 kb on + strand, within Sama_0494 at 607.588 kb on + strand, within Sama_0494 at 607.588 kb on + strand, within Sama_0494 at 607.588 kb on + strand, within Sama_0494 at 607.588 kb on + strand, within Sama_0494 at 607.588 kb on + strand, within Sama_0494 at 607.589 kb on - strand, within Sama_0494 at 607.589 kb on - strand, within Sama_0494 at 607.589 kb on - strand, within Sama_0494 at 607.589 kb on - strand, within Sama_0494 at 607.589 kb on - strand, within Sama_0494 at 607.589 kb on - strand, within Sama_0494 at 607.589 kb on - strand, within Sama_0494 at 607.627 kb on + strand at 607.627 kb on + strand at 607.627 kb on + strand at 607.627 kb on + strand at 607.628 kb on - strand at 607.628 kb on - strand at 607.628 kb on - strand at 607.628 kb on - strand at 607.633 kb on + strand at 607.633 kb on + strand at 607.633 kb on + strand at 607.633 kb on + strand at 607.633 kb on + strand at 607.633 kb on + strand at 607.633 kb on + strand at 607.633 kb on + strand at 607.633 kb on + strand at 607.633 kb on + strand at 607.634 kb on - strand at 607.634 kb on - strand at 607.634 kb on - strand at 607.634 kb on - strand at 607.634 kb on - strand at 607.634 kb on - strand at 607.635 kb on + strand at 607.635 kb on + strand at 607.635 kb on + strand at 607.635 kb on + strand at 607.635 kb on + strand at 607.635 kb on + strand at 607.636 kb on - strand at 607.636 kb on - strand at 607.636 kb on - strand at 607.636 kb on - strand at 607.644 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.00195312 mg/ml remove 605,391 + Sama_0492 0.80 +0.6 605,424 - Sama_0492 0.82 -1.7 605,424 - Sama_0492 0.82 +1.4 605,424 - Sama_0492 0.82 +0.0 605,474 + Sama_0492 0.86 +2.0 605,484 + Sama_0492 0.86 -0.7 605,484 + Sama_0492 0.86 +0.4 605,586 + +0.7 605,586 + +0.4 605,586 + +0.6 605,586 + -0.2 605,586 + -2.3 605,587 - -1.5 605,587 - -0.8 605,587 - +0.5 605,587 - -0.0 605,588 + +0.4 605,588 + -0.7 605,589 - -0.4 605,589 - -1.8 605,589 - +0.0 605,589 - +3.5 605,613 + -1.0 605,613 + +2.0 605,614 - -2.0 605,632 + +0.0 605,655 - -0.7 605,671 - -1.1 605,751 - -1.7 605,755 - -1.4 605,755 - -0.8 605,931 + +2.0 605,985 + -0.0 605,988 + +0.4 605,988 + -0.7 605,988 + -0.0 605,992 + +0.8 605,992 + -0.9 605,997 + -1.1 606,192 + +1.1 606,193 - -0.8 606,215 + -0.4 606,235 + +0.7 606,235 + -1.2 606,236 - -0.0 606,236 - +0.4 606,249 + +0.2 606,249 + -1.0 606,271 + -0.5 606,272 - -0.8 606,272 - -0.4 606,272 - -0.6 606,272 - -0.8 606,286 - -1.2 606,291 + +0.3 606,292 - -0.7 606,305 + +0.4 606,319 + -2.0 606,319 + -0.1 606,319 + +0.2 606,319 + -1.2 606,319 + +1.0 606,319 + -1.8 606,319 + +0.9 606,319 + +0.6 606,319 + +0.5 606,319 + -0.2 606,319 + +0.0 606,319 + +0.4 606,319 + -0.8 606,319 + -1.6 606,320 - -0.7 606,320 - -1.0 606,320 - -0.9 606,320 - -0.3 606,320 - +0.1 606,320 - -0.5 606,320 - +0.7 606,320 - -0.0 606,320 - +0.8 606,320 - -1.0 606,320 - +0.2 606,320 - -1.8 606,347 + -0.4 606,347 + -1.0 606,347 + -0.2 606,347 + +0.8 606,347 + -2.1 606,347 + -0.3 606,347 + -1.3 606,348 - -0.2 606,348 - -0.5 606,348 - -1.1 606,378 + Sama_0493 0.16 -0.5 606,387 + Sama_0493 0.18 -1.2 606,387 + Sama_0493 0.18 +0.8 606,388 - Sama_0493 0.19 +3.5 606,396 + Sama_0493 0.21 +0.1 606,396 + Sama_0493 0.21 +1.2 606,397 - Sama_0493 0.21 -0.8 606,397 - Sama_0493 0.21 +0.0 606,397 - Sama_0493 0.21 -0.5 606,450 + Sama_0493 0.36 -0.2 606,451 - Sama_0493 0.36 +0.2 606,451 - Sama_0493 0.36 -0.5 606,482 + Sama_0493 0.45 +0.7 606,482 + Sama_0493 0.45 -0.4 606,483 - Sama_0493 0.45 +0.2 606,483 - Sama_0493 0.45 +1.2 606,483 - Sama_0493 0.45 +2.0 606,539 - Sama_0493 0.61 +0.6 606,539 - Sama_0493 0.61 +1.2 606,539 - Sama_0493 0.61 +0.6 606,542 - Sama_0493 0.62 +0.3 606,673 + -0.7 606,674 - +0.4 606,710 + +0.8 606,711 - +1.0 606,716 + -1.4 606,717 - -1.0 606,717 - -0.6 606,717 - -0.5 606,717 - +1.7 606,717 - -1.7 606,721 + -0.4 606,721 + -2.2 606,725 + +2.4 606,725 + -0.6 606,725 + -0.2 606,725 + +0.5 606,725 + -1.5 606,726 - +1.5 606,726 - -0.8 606,760 + +0.7 606,760 + +0.7 606,796 + -0.7 606,796 + -1.2 606,796 + -0.3 606,796 + +0.5 606,796 + -1.9 606,797 - -0.1 606,797 - +1.0 606,800 + -0.4 606,800 + -1.4 606,800 + -0.6 606,800 + +0.6 606,800 + +0.4 606,800 + -0.4 606,800 + -1.8 606,801 - +0.8 606,801 - +0.3 606,801 - -1.0 606,801 - -1.8 606,801 - -0.5 606,902 + Sama_0494 0.19 -0.4 606,902 + Sama_0494 0.19 -0.5 606,936 - Sama_0494 0.23 -0.8 606,936 - Sama_0494 0.23 -0.7 606,936 - Sama_0494 0.23 +0.1 607,029 + Sama_0494 0.32 -0.9 607,029 + Sama_0494 0.32 -1.2 607,029 + Sama_0494 0.32 +1.2 607,029 + Sama_0494 0.32 -0.4 607,030 - Sama_0494 0.32 -0.5 607,030 - Sama_0494 0.32 -0.1 607,030 - Sama_0494 0.32 +0.3 607,030 - Sama_0494 0.32 -0.5 607,030 - Sama_0494 0.32 -1.0 607,030 - Sama_0494 0.32 +1.0 607,030 - Sama_0494 0.32 -0.2 607,091 + Sama_0494 0.38 -1.4 607,092 - Sama_0494 0.38 -0.6 607,122 + Sama_0494 0.41 +0.4 607,122 + Sama_0494 0.41 -0.8 607,122 + Sama_0494 0.41 -1.1 607,122 + Sama_0494 0.41 -0.4 607,122 + Sama_0494 0.41 -1.2 607,122 + Sama_0494 0.41 +0.2 607,122 + Sama_0494 0.41 -0.3 607,122 + Sama_0494 0.41 -0.4 607,123 - Sama_0494 0.41 -0.8 607,123 - Sama_0494 0.41 +0.6 607,123 - Sama_0494 0.41 -0.2 607,123 - Sama_0494 0.41 -0.8 607,123 - Sama_0494 0.41 +0.3 607,123 - Sama_0494 0.41 +1.0 607,123 - Sama_0494 0.41 -2.2 607,123 - Sama_0494 0.41 +0.4 607,123 - Sama_0494 0.41 -0.7 607,123 - Sama_0494 0.41 +0.4 607,124 + Sama_0494 0.41 -0.8 607,124 + Sama_0494 0.41 -0.6 607,124 + Sama_0494 0.41 -0.3 607,144 + Sama_0494 0.43 -1.9 607,148 + Sama_0494 0.44 -1.0 607,148 + Sama_0494 0.44 -0.2 607,148 + Sama_0494 0.44 +1.4 607,149 - Sama_0494 0.44 +0.6 607,149 - Sama_0494 0.44 -0.3 607,149 - Sama_0494 0.44 +1.0 607,149 - Sama_0494 0.44 +0.2 607,149 - Sama_0494 0.44 -0.0 607,196 + Sama_0494 0.48 +0.4 607,313 + Sama_0494 0.60 -1.0 607,314 - Sama_0494 0.60 -0.8 607,322 + Sama_0494 0.61 +0.5 607,323 - Sama_0494 0.61 +3.3 607,323 - Sama_0494 0.61 -0.2 607,355 + Sama_0494 0.64 +0.2 607,355 + Sama_0494 0.64 -0.0 607,362 - Sama_0494 0.65 -0.4 607,560 + Sama_0494 0.84 -0.5 607,560 + Sama_0494 0.84 +1.3 607,588 + Sama_0494 0.87 -0.8 607,588 + Sama_0494 0.87 -0.0 607,588 + Sama_0494 0.87 +0.3 607,588 + Sama_0494 0.87 -1.0 607,588 + Sama_0494 0.87 +0.5 607,588 + Sama_0494 0.87 +0.4 607,588 + Sama_0494 0.87 -0.6 607,588 + Sama_0494 0.87 +0.6 607,588 + Sama_0494 0.87 -0.8 607,588 + Sama_0494 0.87 +0.2 607,588 + Sama_0494 0.87 -0.5 607,588 + Sama_0494 0.87 +0.1 607,588 + Sama_0494 0.87 +1.0 607,588 + Sama_0494 0.87 -0.7 607,588 + Sama_0494 0.87 +0.3 607,588 + Sama_0494 0.87 -1.0 607,588 + Sama_0494 0.87 -0.3 607,589 - Sama_0494 0.87 +2.0 607,589 - Sama_0494 0.87 +1.2 607,589 - Sama_0494 0.87 +0.1 607,589 - Sama_0494 0.87 +0.1 607,589 - Sama_0494 0.87 -0.9 607,589 - Sama_0494 0.87 -0.6 607,589 - Sama_0494 0.87 -0.9 607,627 + +0.7 607,627 + -0.2 607,627 + +0.2 607,627 + -0.0 607,628 - +0.1 607,628 - -0.2 607,628 - -0.8 607,628 - -1.7 607,633 + -0.7 607,633 + -0.1 607,633 + -0.9 607,633 + +0.0 607,633 + -0.3 607,633 + +0.8 607,633 + +0.4 607,633 + -0.5 607,633 + +0.0 607,633 + -0.4 607,634 - -0.5 607,634 - +0.3 607,634 - +1.2 607,634 - -0.4 607,634 - -0.6 607,634 - -0.4 607,635 + +0.7 607,635 + +0.5 607,635 + -2.0 607,635 + +0.5 607,635 + +1.0 607,635 + +0.1 607,636 - -1.4 607,636 - -0.5 607,636 - +0.4 607,636 - +0.4 607,644 + -1.9
Or see this region's nucleotide sequence