Strain Fitness in Shewanella amazonensis SB2B around Sama_0433

Experiment: Carbenicillin 0.00195312 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0432 and Sama_0433 are separated by 15 nucleotidesSama_0433 and Sama_0434 are separated by 17 nucleotides Sama_0432: Sama_0432 - response regulator receiver protein (RefSeq), at 531,879 to 532,790 _0432 Sama_0433: Sama_0433 - hypothetical protein (RefSeq), at 532,806 to 533,057 _0433 Sama_0434: Sama_0434 - putative secreted hydrolase (RefSeq), at 533,075 to 534,367 _0434 Position (kb) 532 533 534Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 531.840 kb on + strandat 531.840 kb on + strandat 531.840 kb on + strandat 531.840 kb on + strandat 531.840 kb on + strandat 531.841 kb on - strandat 531.841 kb on - strandat 531.854 kb on + strandat 531.854 kb on + strandat 531.883 kb on - strandat 531.883 kb on - strandat 532.009 kb on + strand, within Sama_0432at 532.010 kb on - strand, within Sama_0432at 532.010 kb on - strand, within Sama_0432at 532.034 kb on + strand, within Sama_0432at 532.071 kb on + strand, within Sama_0432at 532.071 kb on + strand, within Sama_0432at 532.072 kb on - strand, within Sama_0432at 532.116 kb on + strand, within Sama_0432at 532.117 kb on - strand, within Sama_0432at 532.117 kb on - strand, within Sama_0432at 532.117 kb on - strand, within Sama_0432at 532.267 kb on + strand, within Sama_0432at 532.267 kb on + strand, within Sama_0432at 532.267 kb on + strand, within Sama_0432at 532.268 kb on - strand, within Sama_0432at 532.300 kb on - strand, within Sama_0432at 532.300 kb on - strand, within Sama_0432at 532.385 kb on + strand, within Sama_0432at 532.386 kb on - strand, within Sama_0432at 532.444 kb on + strand, within Sama_0432at 532.444 kb on + strand, within Sama_0432at 532.490 kb on + strand, within Sama_0432at 532.490 kb on + strand, within Sama_0432at 532.491 kb on - strand, within Sama_0432at 532.491 kb on - strand, within Sama_0432at 532.491 kb on - strand, within Sama_0432at 532.563 kb on - strand, within Sama_0432at 532.610 kb on - strand, within Sama_0432at 532.618 kb on + strand, within Sama_0432at 532.618 kb on + strand, within Sama_0432at 532.618 kb on + strand, within Sama_0432at 532.618 kb on + strand, within Sama_0432at 532.618 kb on + strand, within Sama_0432at 532.618 kb on + strand, within Sama_0432at 532.618 kb on + strand, within Sama_0432at 532.618 kb on + strand, within Sama_0432at 532.618 kb on + strand, within Sama_0432at 532.618 kb on + strand, within Sama_0432at 532.618 kb on + strand, within Sama_0432at 532.619 kb on - strand, within Sama_0432at 532.619 kb on - strand, within Sama_0432at 532.619 kb on - strand, within Sama_0432at 532.619 kb on - strand, within Sama_0432at 532.619 kb on - strand, within Sama_0432at 532.619 kb on - strand, within Sama_0432at 532.619 kb on - strand, within Sama_0432at 532.619 kb on - strand, within Sama_0432at 532.619 kb on - strand, within Sama_0432at 532.622 kb on + strand, within Sama_0432at 532.622 kb on + strand, within Sama_0432at 532.622 kb on + strand, within Sama_0432at 532.622 kb on + strand, within Sama_0432at 532.622 kb on + strand, within Sama_0432at 532.622 kb on + strand, within Sama_0432at 532.622 kb on + strand, within Sama_0432at 532.622 kb on + strand, within Sama_0432at 532.622 kb on + strand, within Sama_0432at 532.622 kb on + strand, within Sama_0432at 532.622 kb on + strand, within Sama_0432at 532.623 kb on - strand, within Sama_0432at 532.623 kb on - strand, within Sama_0432at 532.623 kb on - strand, within Sama_0432at 532.623 kb on - strand, within Sama_0432at 532.623 kb on - strand, within Sama_0432at 532.623 kb on - strand, within Sama_0432at 532.623 kb on - strand, within Sama_0432at 532.623 kb on - strand, within Sama_0432at 532.623 kb on - strand, within Sama_0432at 532.623 kb on - strand, within Sama_0432at 532.623 kb on - strand, within Sama_0432at 532.687 kb on + strand, within Sama_0432at 532.687 kb on + strand, within Sama_0432at 532.687 kb on + strand, within Sama_0432at 532.687 kb on + strand, within Sama_0432at 532.687 kb on + strand, within Sama_0432at 532.687 kb on + strand, within Sama_0432at 532.687 kb on + strand, within Sama_0432at 532.688 kb on - strand, within Sama_0432at 532.688 kb on - strand, within Sama_0432at 532.688 kb on - strand, within Sama_0432at 532.688 kb on - strand, within Sama_0432at 532.774 kb on + strandat 532.774 kb on + strandat 532.774 kb on + strandat 532.774 kb on + strandat 532.774 kb on + strandat 532.775 kb on - strandat 532.775 kb on - strandat 532.775 kb on - strandat 532.775 kb on - strandat 532.777 kb on + strandat 532.777 kb on + strandat 532.777 kb on + strandat 532.777 kb on + strandat 532.777 kb on + strandat 532.777 kb on + strandat 532.778 kb on - strandat 532.778 kb on - strandat 532.778 kb on - strandat 532.778 kb on - strandat 532.778 kb on - strandat 532.778 kb on - strandat 532.778 kb on - strandat 532.778 kb on - strandat 532.844 kb on + strand, within Sama_0433at 532.845 kb on - strand, within Sama_0433at 532.884 kb on + strand, within Sama_0433at 532.885 kb on - strand, within Sama_0433at 532.961 kb on + strand, within Sama_0433at 532.961 kb on + strand, within Sama_0433at 532.978 kb on + strand, within Sama_0433at 532.978 kb on + strand, within Sama_0433at 533.016 kb on + strand, within Sama_0433at 533.016 kb on + strand, within Sama_0433at 533.017 kb on - strand, within Sama_0433at 533.021 kb on - strand, within Sama_0433at 533.021 kb on - strand, within Sama_0433at 533.021 kb on - strand, within Sama_0433at 533.021 kb on - strand, within Sama_0433at 533.135 kb on - strandat 533.156 kb on + strandat 533.156 kb on + strandat 533.156 kb on + strandat 533.157 kb on - strandat 533.157 kb on - strandat 533.157 kb on - strandat 533.168 kb on - strandat 533.199 kb on - strandat 533.316 kb on + strand, within Sama_0434at 533.317 kb on - strand, within Sama_0434at 533.317 kb on - strand, within Sama_0434at 533.317 kb on - strand, within Sama_0434at 533.368 kb on + strand, within Sama_0434at 533.460 kb on + strand, within Sama_0434at 533.460 kb on + strand, within Sama_0434at 533.460 kb on + strand, within Sama_0434at 533.461 kb on - strand, within Sama_0434at 533.472 kb on + strand, within Sama_0434at 533.472 kb on + strand, within Sama_0434at 533.473 kb on - strand, within Sama_0434at 533.473 kb on - strand, within Sama_0434at 533.473 kb on - strand, within Sama_0434at 533.476 kb on + strand, within Sama_0434at 533.477 kb on - strand, within Sama_0434at 533.477 kb on - strand, within Sama_0434at 533.490 kb on + strand, within Sama_0434at 533.490 kb on + strand, within Sama_0434at 533.490 kb on + strand, within Sama_0434at 533.490 kb on + strand, within Sama_0434at 533.490 kb on + strand, within Sama_0434at 533.490 kb on + strand, within Sama_0434at 533.491 kb on - strand, within Sama_0434at 533.491 kb on - strand, within Sama_0434at 533.491 kb on - strand, within Sama_0434at 533.617 kb on + strand, within Sama_0434at 533.618 kb on - strand, within Sama_0434at 533.618 kb on - strand, within Sama_0434at 533.618 kb on - strand, within Sama_0434at 533.668 kb on + strand, within Sama_0434at 533.668 kb on + strand, within Sama_0434at 533.669 kb on - strand, within Sama_0434at 533.669 kb on - strand, within Sama_0434at 533.669 kb on - strand, within Sama_0434at 533.669 kb on - strand, within Sama_0434at 533.669 kb on - strand, within Sama_0434at 533.670 kb on + strand, within Sama_0434at 533.670 kb on + strand, within Sama_0434at 533.670 kb on + strand, within Sama_0434at 533.670 kb on + strand, within Sama_0434at 533.670 kb on + strand, within Sama_0434at 533.670 kb on + strand, within Sama_0434at 533.670 kb on + strand, within Sama_0434at 533.670 kb on + strand, within Sama_0434at 533.670 kb on + strand, within Sama_0434at 533.671 kb on - strand, within Sama_0434at 533.671 kb on - strand, within Sama_0434at 533.671 kb on - strand, within Sama_0434at 533.671 kb on - strand, within Sama_0434at 533.671 kb on - strand, within Sama_0434at 533.671 kb on - strand, within Sama_0434at 533.671 kb on - strand, within Sama_0434at 533.692 kb on + strand, within Sama_0434at 533.693 kb on - strand, within Sama_0434at 533.735 kb on - strand, within Sama_0434at 533.735 kb on - strand, within Sama_0434at 533.746 kb on - strand, within Sama_0434at 534.039 kb on + strand, within Sama_0434at 534.039 kb on + strand, within Sama_0434at 534.039 kb on + strand, within Sama_0434at 534.040 kb on - strand, within Sama_0434at 534.040 kb on - strand, within Sama_0434at 534.040 kb on - strand, within Sama_0434

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 0.00195312 mg/ml
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531,840 + -0.9
531,840 + +0.2
531,840 + +1.2
531,840 + -0.4
531,840 + +0.6
531,841 - +0.1
531,841 - +1.0
531,854 + -1.0
531,854 + -1.1
531,883 - +0.7
531,883 - +2.0
532,009 + Sama_0432 0.14 -1.4
532,010 - Sama_0432 0.14 +0.5
532,010 - Sama_0432 0.14 -0.0
532,034 + Sama_0432 0.17 -0.2
532,071 + Sama_0432 0.21 +0.0
532,071 + Sama_0432 0.21 +0.4
532,072 - Sama_0432 0.21 -0.4
532,116 + Sama_0432 0.26 -0.3
532,117 - Sama_0432 0.26 -0.4
532,117 - Sama_0432 0.26 +0.2
532,117 - Sama_0432 0.26 -0.5
532,267 + Sama_0432 0.43 +0.6
532,267 + Sama_0432 0.43 +0.5
532,267 + Sama_0432 0.43 +0.2
532,268 - Sama_0432 0.43 +0.4
532,300 - Sama_0432 0.46 +0.2
532,300 - Sama_0432 0.46 -0.4
532,385 + Sama_0432 0.55 -0.5
532,386 - Sama_0432 0.56 +1.0
532,444 + Sama_0432 0.62 -0.4
532,444 + Sama_0432 0.62 -0.8
532,490 + Sama_0432 0.67 -1.5
532,490 + Sama_0432 0.67 +2.0
532,491 - Sama_0432 0.67 +0.4
532,491 - Sama_0432 0.67 -1.4
532,491 - Sama_0432 0.67 -0.0
532,563 - Sama_0432 0.75 +0.1
532,610 - Sama_0432 0.80 +0.8
532,618 + Sama_0432 0.81 -0.1
532,618 + Sama_0432 0.81 -1.2
532,618 + Sama_0432 0.81 +0.2
532,618 + Sama_0432 0.81 +0.3
532,618 + Sama_0432 0.81 -2.8
532,618 + Sama_0432 0.81 -0.9
532,618 + Sama_0432 0.81 +0.5
532,618 + Sama_0432 0.81 -0.5
532,618 + Sama_0432 0.81 +1.4
532,618 + Sama_0432 0.81 -1.7
532,618 + Sama_0432 0.81 +0.4
532,619 - Sama_0432 0.81 -0.7
532,619 - Sama_0432 0.81 +0.1
532,619 - Sama_0432 0.81 -0.2
532,619 - Sama_0432 0.81 +1.6
532,619 - Sama_0432 0.81 -1.0
532,619 - Sama_0432 0.81 -0.6
532,619 - Sama_0432 0.81 +1.0
532,619 - Sama_0432 0.81 -0.4
532,619 - Sama_0432 0.81 -0.0
532,622 + Sama_0432 0.81 -2.1
532,622 + Sama_0432 0.81 -0.2
532,622 + Sama_0432 0.81 +1.6
532,622 + Sama_0432 0.81 -0.4
532,622 + Sama_0432 0.81 -0.4
532,622 + Sama_0432 0.81 -1.0
532,622 + Sama_0432 0.81 -0.7
532,622 + Sama_0432 0.81 -0.2
532,622 + Sama_0432 0.81 -0.1
532,622 + Sama_0432 0.81 +0.6
532,622 + Sama_0432 0.81 -0.6
532,623 - Sama_0432 0.82 -0.2
532,623 - Sama_0432 0.82 +2.5
532,623 - Sama_0432 0.82 +1.0
532,623 - Sama_0432 0.82 +1.1
532,623 - Sama_0432 0.82 -1.4
532,623 - Sama_0432 0.82 -0.3
532,623 - Sama_0432 0.82 -0.4
532,623 - Sama_0432 0.82 -0.4
532,623 - Sama_0432 0.82 -1.0
532,623 - Sama_0432 0.82 -0.2
532,623 - Sama_0432 0.82 -0.7
532,687 + Sama_0432 0.89 +1.6
532,687 + Sama_0432 0.89 +0.8
532,687 + Sama_0432 0.89 -1.4
532,687 + Sama_0432 0.89 +1.0
532,687 + Sama_0432 0.89 -0.0
532,687 + Sama_0432 0.89 +0.0
532,687 + Sama_0432 0.89 -2.6
532,688 - Sama_0432 0.89 +0.3
532,688 - Sama_0432 0.89 -0.0
532,688 - Sama_0432 0.89 -0.8
532,688 - Sama_0432 0.89 -0.0
532,774 + -1.0
532,774 + -0.7
532,774 + -0.6
532,774 + +0.4
532,774 + -2.0
532,775 - -0.1
532,775 - -0.7
532,775 - -1.4
532,775 - -0.4
532,777 + +0.6
532,777 + -0.6
532,777 + -0.0
532,777 + +0.4
532,777 + -1.5
532,777 + +1.4
532,778 - +0.4
532,778 - -0.4
532,778 - -1.0
532,778 - -0.5
532,778 - +1.0
532,778 - +0.7
532,778 - -0.6
532,778 - +1.5
532,844 + Sama_0433 0.15 -0.5
532,845 - Sama_0433 0.15 -0.7
532,884 + Sama_0433 0.31 +0.5
532,885 - Sama_0433 0.31 +0.1
532,961 + Sama_0433 0.62 -0.8
532,961 + Sama_0433 0.62 +0.3
532,978 + Sama_0433 0.68 -1.5
532,978 + Sama_0433 0.68 -0.4
533,016 + Sama_0433 0.83 -1.7
533,016 + Sama_0433 0.83 -1.1
533,017 - Sama_0433 0.84 -1.4
533,021 - Sama_0433 0.85 -1.2
533,021 - Sama_0433 0.85 -0.8
533,021 - Sama_0433 0.85 -0.9
533,021 - Sama_0433 0.85 -0.6
533,135 - -1.1
533,156 + +1.4
533,156 + -1.0
533,156 + -1.4
533,157 - -0.1
533,157 - -0.6
533,157 - -0.3
533,168 - -2.2
533,199 - -0.4
533,316 + Sama_0434 0.19 +0.1
533,317 - Sama_0434 0.19 +0.4
533,317 - Sama_0434 0.19 -0.7
533,317 - Sama_0434 0.19 +0.4
533,368 + Sama_0434 0.23 +1.2
533,460 + Sama_0434 0.30 +0.5
533,460 + Sama_0434 0.30 -0.7
533,460 + Sama_0434 0.30 -1.4
533,461 - Sama_0434 0.30 +0.6
533,472 + Sama_0434 0.31 -0.4
533,472 + Sama_0434 0.31 +1.4
533,473 - Sama_0434 0.31 +1.0
533,473 - Sama_0434 0.31 -0.1
533,473 - Sama_0434 0.31 -0.7
533,476 + Sama_0434 0.31 +0.7
533,477 - Sama_0434 0.31 +1.0
533,477 - Sama_0434 0.31 -0.3
533,490 + Sama_0434 0.32 -0.6
533,490 + Sama_0434 0.32 -0.6
533,490 + Sama_0434 0.32 -0.5
533,490 + Sama_0434 0.32 +1.0
533,490 + Sama_0434 0.32 +0.5
533,490 + Sama_0434 0.32 -0.8
533,491 - Sama_0434 0.32 -1.1
533,491 - Sama_0434 0.32 +0.5
533,491 - Sama_0434 0.32 -0.0
533,617 + Sama_0434 0.42 +0.5
533,618 - Sama_0434 0.42 +0.6
533,618 - Sama_0434 0.42 -0.7
533,618 - Sama_0434 0.42 -0.8
533,668 + Sama_0434 0.46 +0.4
533,668 + Sama_0434 0.46 -1.2
533,669 - Sama_0434 0.46 -1.0
533,669 - Sama_0434 0.46 -2.4
533,669 - Sama_0434 0.46 +0.4
533,669 - Sama_0434 0.46 -0.4
533,669 - Sama_0434 0.46 -0.5
533,670 + Sama_0434 0.46 -0.5
533,670 + Sama_0434 0.46 -1.8
533,670 + Sama_0434 0.46 -0.5
533,670 + Sama_0434 0.46 -1.5
533,670 + Sama_0434 0.46 -0.7
533,670 + Sama_0434 0.46 -0.6
533,670 + Sama_0434 0.46 -0.0
533,670 + Sama_0434 0.46 -0.4
533,670 + Sama_0434 0.46 -0.8
533,671 - Sama_0434 0.46 +0.1
533,671 - Sama_0434 0.46 +0.8
533,671 - Sama_0434 0.46 +1.0
533,671 - Sama_0434 0.46 +0.3
533,671 - Sama_0434 0.46 -2.7
533,671 - Sama_0434 0.46 -0.4
533,671 - Sama_0434 0.46 -1.6
533,692 + Sama_0434 0.48 -0.7
533,693 - Sama_0434 0.48 +0.5
533,735 - Sama_0434 0.51 +0.4
533,735 - Sama_0434 0.51 -0.9
533,746 - Sama_0434 0.52 -1.0
534,039 + Sama_0434 0.75 -0.6
534,039 + Sama_0434 0.75 -0.6
534,039 + Sama_0434 0.75 +1.3
534,040 - Sama_0434 0.75 +0.5
534,040 - Sama_0434 0.75 +0.4
534,040 - Sama_0434 0.75 +0.2

Or see this region's nucleotide sequence