Strain Fitness in Shewanella amazonensis SB2B around Sama_0270

Experiment: Carbenicillin 0.00195312 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0269 and Sama_0270 are separated by 82 nucleotidesSama_0270 and Sama_0271 are separated by 83 nucleotides Sama_0269: Sama_0269 - hypothetical protein (RefSeq), at 308,553 to 309,617 _0269 Sama_0270: Sama_0270 - prolipoprotein diacylglyceryl transferase (RefSeq), at 309,700 to 310,467 _0270 Sama_0271: Sama_0271 - hypothetical protein (RefSeq), at 310,551 to 312,026 _0271 Position (kb) 309 310 311Strain fitness (log2 ratio) -2 -1 0 1 2at 308.747 kb on + strand, within Sama_0269at 308.747 kb on + strand, within Sama_0269at 308.747 kb on + strand, within Sama_0269at 308.748 kb on - strand, within Sama_0269at 308.784 kb on + strand, within Sama_0269at 308.784 kb on + strand, within Sama_0269at 308.785 kb on - strand, within Sama_0269at 308.785 kb on - strand, within Sama_0269at 308.785 kb on - strand, within Sama_0269at 308.785 kb on - strand, within Sama_0269at 308.874 kb on + strand, within Sama_0269at 308.874 kb on + strand, within Sama_0269at 308.875 kb on - strand, within Sama_0269at 308.896 kb on + strand, within Sama_0269at 308.896 kb on + strand, within Sama_0269at 308.896 kb on + strand, within Sama_0269at 308.896 kb on + strand, within Sama_0269at 308.896 kb on + strand, within Sama_0269at 308.896 kb on + strand, within Sama_0269at 308.896 kb on + strand, within Sama_0269at 308.896 kb on + strand, within Sama_0269at 308.896 kb on + strand, within Sama_0269at 308.896 kb on + strand, within Sama_0269at 308.896 kb on + strand, within Sama_0269at 308.896 kb on + strand, within Sama_0269at 308.896 kb on + strand, within Sama_0269at 308.896 kb on + strand, within Sama_0269at 308.896 kb on + strand, within Sama_0269at 308.896 kb on + strand, within Sama_0269at 308.897 kb on - strand, within Sama_0269at 308.897 kb on - strand, within Sama_0269at 308.897 kb on - strand, within Sama_0269at 308.897 kb on - strand, within Sama_0269at 308.897 kb on - strand, within Sama_0269at 308.897 kb on - strand, within Sama_0269at 308.897 kb on - strand, within Sama_0269at 308.897 kb on - strand, within Sama_0269at 308.897 kb on - strand, within Sama_0269at 308.897 kb on - strand, within Sama_0269at 309.080 kb on + strand, within Sama_0269at 309.080 kb on + strand, within Sama_0269at 309.080 kb on + strand, within Sama_0269at 309.080 kb on + strand, within Sama_0269at 309.080 kb on + strand, within Sama_0269at 309.080 kb on + strand, within Sama_0269at 309.080 kb on + strand, within Sama_0269at 309.080 kb on + strand, within Sama_0269at 309.081 kb on - strand, within Sama_0269at 309.081 kb on - strand, within Sama_0269at 309.081 kb on - strand, within Sama_0269at 309.176 kb on + strand, within Sama_0269at 309.209 kb on + strand, within Sama_0269at 309.248 kb on + strand, within Sama_0269at 309.249 kb on - strand, within Sama_0269at 309.273 kb on + strand, within Sama_0269at 309.274 kb on - strand, within Sama_0269at 309.274 kb on - strand, within Sama_0269at 309.274 kb on - strand, within Sama_0269at 309.292 kb on + strand, within Sama_0269at 309.293 kb on - strand, within Sama_0269at 309.293 kb on - strand, within Sama_0269at 309.293 kb on - strand, within Sama_0269at 309.406 kb on + strand, within Sama_0269at 309.406 kb on + strand, within Sama_0269at 309.406 kb on + strand, within Sama_0269at 309.406 kb on + strand, within Sama_0269at 309.406 kb on + strand, within Sama_0269at 309.406 kb on + strand, within Sama_0269at 309.406 kb on + strand, within Sama_0269at 309.406 kb on + strand, within Sama_0269at 309.406 kb on + strand, within Sama_0269at 309.407 kb on - strand, within Sama_0269at 309.407 kb on - strand, within Sama_0269at 309.407 kb on - strand, within Sama_0269at 309.407 kb on - strand, within Sama_0269at 309.407 kb on - strand, within Sama_0269at 309.407 kb on - strand, within Sama_0269at 309.452 kb on + strand, within Sama_0269at 309.452 kb on + strand, within Sama_0269at 309.452 kb on + strand, within Sama_0269at 309.452 kb on + strand, within Sama_0269at 309.452 kb on + strand, within Sama_0269at 309.453 kb on - strand, within Sama_0269at 309.453 kb on - strand, within Sama_0269at 309.489 kb on + strand, within Sama_0269at 309.489 kb on + strand, within Sama_0269at 309.508 kb on - strand, within Sama_0269at 309.508 kb on - strand, within Sama_0269at 309.533 kb on + strandat 309.533 kb on + strandat 309.567 kb on + strandat 309.567 kb on + strandat 309.567 kb on + strandat 309.567 kb on + strandat 309.568 kb on - strandat 309.568 kb on - strandat 309.568 kb on - strandat 309.577 kb on + strandat 309.577 kb on + strandat 309.578 kb on - strandat 309.578 kb on - strandat 309.599 kb on + strandat 309.599 kb on + strandat 309.639 kb on + strandat 309.640 kb on - strandat 309.679 kb on + strandat 309.679 kb on + strandat 309.679 kb on + strandat 309.679 kb on + strandat 309.679 kb on + strandat 309.679 kb on + strandat 309.679 kb on + strandat 309.679 kb on + strandat 309.679 kb on + strandat 309.680 kb on - strandat 309.680 kb on - strandat 309.680 kb on - strandat 309.699 kb on + strandat 309.699 kb on + strandat 309.699 kb on + strandat 309.699 kb on + strandat 309.700 kb on - strandat 309.700 kb on - strandat 309.700 kb on - strandat 309.700 kb on - strandat 309.700 kb on - strandat 309.723 kb on - strandat 309.781 kb on - strand, within Sama_0270at 309.871 kb on - strand, within Sama_0270at 309.881 kb on + strand, within Sama_0270at 309.882 kb on - strand, within Sama_0270at 309.882 kb on - strand, within Sama_0270at 309.913 kb on + strand, within Sama_0270at 309.914 kb on - strand, within Sama_0270at 309.928 kb on + strand, within Sama_0270at 309.928 kb on + strand, within Sama_0270at 309.957 kb on + strand, within Sama_0270at 309.957 kb on + strand, within Sama_0270at 309.958 kb on - strand, within Sama_0270at 310.041 kb on + strand, within Sama_0270at 310.051 kb on + strand, within Sama_0270at 310.052 kb on - strand, within Sama_0270at 310.052 kb on - strand, within Sama_0270at 310.052 kb on - strand, within Sama_0270at 310.063 kb on + strand, within Sama_0270at 310.101 kb on - strand, within Sama_0270at 310.101 kb on - strand, within Sama_0270at 310.210 kb on + strand, within Sama_0270at 310.210 kb on + strand, within Sama_0270at 310.220 kb on + strand, within Sama_0270at 310.220 kb on + strand, within Sama_0270at 310.220 kb on + strand, within Sama_0270at 310.221 kb on - strand, within Sama_0270at 310.225 kb on + strand, within Sama_0270at 310.266 kb on + strand, within Sama_0270at 310.266 kb on + strand, within Sama_0270at 310.267 kb on - strand, within Sama_0270at 310.267 kb on - strand, within Sama_0270at 310.267 kb on - strand, within Sama_0270at 310.267 kb on - strand, within Sama_0270at 310.345 kb on - strand, within Sama_0270at 310.363 kb on + strand, within Sama_0270at 310.363 kb on + strand, within Sama_0270at 310.425 kb on + strandat 310.426 kb on - strandat 310.426 kb on - strandat 310.482 kb on + strandat 310.482 kb on + strandat 310.482 kb on + strandat 310.483 kb on - strandat 310.513 kb on + strandat 310.514 kb on - strandat 310.564 kb on + strandat 310.579 kb on + strandat 310.580 kb on - strandat 310.580 kb on - strandat 310.580 kb on - strandat 310.580 kb on - strandat 310.580 kb on - strandat 310.644 kb on - strandat 310.644 kb on - strandat 310.690 kb on + strandat 310.690 kb on + strandat 310.690 kb on + strandat 310.691 kb on - strandat 310.691 kb on - strandat 310.745 kb on + strand, within Sama_0271at 310.746 kb on - strand, within Sama_0271at 310.772 kb on + strand, within Sama_0271at 310.822 kb on + strand, within Sama_0271at 310.823 kb on - strand, within Sama_0271at 310.823 kb on - strand, within Sama_0271at 310.886 kb on + strand, within Sama_0271at 310.886 kb on + strand, within Sama_0271at 310.977 kb on - strand, within Sama_0271at 310.977 kb on - strand, within Sama_0271at 310.996 kb on - strand, within Sama_0271at 310.996 kb on - strand, within Sama_0271at 311.007 kb on - strand, within Sama_0271at 311.007 kb on - strand, within Sama_0271at 311.009 kb on + strand, within Sama_0271at 311.016 kb on - strand, within Sama_0271at 311.016 kb on - strand, within Sama_0271at 311.346 kb on + strand, within Sama_0271at 311.347 kb on - strand, within Sama_0271at 311.367 kb on - strand, within Sama_0271at 311.367 kb on - strand, within Sama_0271at 311.409 kb on + strand, within Sama_0271at 311.409 kb on + strand, within Sama_0271at 311.409 kb on + strand, within Sama_0271at 311.409 kb on + strand, within Sama_0271at 311.409 kb on + strand, within Sama_0271at 311.409 kb on + strand, within Sama_0271at 311.410 kb on - strand, within Sama_0271at 311.410 kb on - strand, within Sama_0271at 311.410 kb on - strand, within Sama_0271at 311.410 kb on - strand, within Sama_0271at 311.410 kb on - strand, within Sama_0271at 311.410 kb on - strand, within Sama_0271at 311.436 kb on + strand, within Sama_0271at 311.437 kb on - strand, within Sama_0271at 311.437 kb on - strand, within Sama_0271

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 0.00195312 mg/ml
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308,747 + Sama_0269 0.18 -1.2
308,747 + Sama_0269 0.18 +0.6
308,747 + Sama_0269 0.18 -0.2
308,748 - Sama_0269 0.18 +0.9
308,784 + Sama_0269 0.22 -0.2
308,784 + Sama_0269 0.22 -0.4
308,785 - Sama_0269 0.22 -1.3
308,785 - Sama_0269 0.22 -1.4
308,785 - Sama_0269 0.22 +0.9
308,785 - Sama_0269 0.22 -0.4
308,874 + Sama_0269 0.30 +0.5
308,874 + Sama_0269 0.30 -0.7
308,875 - Sama_0269 0.30 +0.3
308,896 + Sama_0269 0.32 +0.8
308,896 + Sama_0269 0.32 +0.5
308,896 + Sama_0269 0.32 -2.1
308,896 + Sama_0269 0.32 -0.2
308,896 + Sama_0269 0.32 -0.1
308,896 + Sama_0269 0.32 -0.3
308,896 + Sama_0269 0.32 +1.2
308,896 + Sama_0269 0.32 -1.0
308,896 + Sama_0269 0.32 +0.8
308,896 + Sama_0269 0.32 -0.8
308,896 + Sama_0269 0.32 +0.3
308,896 + Sama_0269 0.32 -0.8
308,896 + Sama_0269 0.32 -1.8
308,896 + Sama_0269 0.32 +0.7
308,896 + Sama_0269 0.32 -0.9
308,896 + Sama_0269 0.32 -0.4
308,897 - Sama_0269 0.32 +0.6
308,897 - Sama_0269 0.32 +0.1
308,897 - Sama_0269 0.32 -0.5
308,897 - Sama_0269 0.32 +0.6
308,897 - Sama_0269 0.32 +0.7
308,897 - Sama_0269 0.32 +0.3
308,897 - Sama_0269 0.32 +1.6
308,897 - Sama_0269 0.32 -1.2
308,897 - Sama_0269 0.32 +0.2
308,897 - Sama_0269 0.32 -1.6
309,080 + Sama_0269 0.49 -0.1
309,080 + Sama_0269 0.49 -0.1
309,080 + Sama_0269 0.49 -1.1
309,080 + Sama_0269 0.49 -0.6
309,080 + Sama_0269 0.49 +0.2
309,080 + Sama_0269 0.49 +0.0
309,080 + Sama_0269 0.49 +1.0
309,080 + Sama_0269 0.49 +0.5
309,081 - Sama_0269 0.50 -0.6
309,081 - Sama_0269 0.50 -0.6
309,081 - Sama_0269 0.50 -0.4
309,176 + Sama_0269 0.58 +0.3
309,209 + Sama_0269 0.62 -0.4
309,248 + Sama_0269 0.65 -0.1
309,249 - Sama_0269 0.65 +0.7
309,273 + Sama_0269 0.68 -0.4
309,274 - Sama_0269 0.68 -0.7
309,274 - Sama_0269 0.68 +0.3
309,274 - Sama_0269 0.68 +0.3
309,292 + Sama_0269 0.69 +1.0
309,293 - Sama_0269 0.69 -0.9
309,293 - Sama_0269 0.69 +0.1
309,293 - Sama_0269 0.69 +1.9
309,406 + Sama_0269 0.80 -0.2
309,406 + Sama_0269 0.80 -0.8
309,406 + Sama_0269 0.80 -0.9
309,406 + Sama_0269 0.80 +1.0
309,406 + Sama_0269 0.80 -2.0
309,406 + Sama_0269 0.80 +0.9
309,406 + Sama_0269 0.80 -0.1
309,406 + Sama_0269 0.80 -0.3
309,406 + Sama_0269 0.80 -1.3
309,407 - Sama_0269 0.80 +0.6
309,407 - Sama_0269 0.80 -1.6
309,407 - Sama_0269 0.80 -0.5
309,407 - Sama_0269 0.80 +0.5
309,407 - Sama_0269 0.80 +0.3
309,407 - Sama_0269 0.80 -1.0
309,452 + Sama_0269 0.84 -0.5
309,452 + Sama_0269 0.84 -0.7
309,452 + Sama_0269 0.84 +0.0
309,452 + Sama_0269 0.84 -1.4
309,452 + Sama_0269 0.84 -0.9
309,453 - Sama_0269 0.85 -0.5
309,453 - Sama_0269 0.85 +0.6
309,489 + Sama_0269 0.88 -0.3
309,489 + Sama_0269 0.88 -0.1
309,508 - Sama_0269 0.90 +0.5
309,508 - Sama_0269 0.90 +0.5
309,533 + -0.6
309,533 + -0.4
309,567 + +0.3
309,567 + -0.4
309,567 + +1.9
309,567 + -0.2
309,568 - -1.2
309,568 - +0.2
309,568 - +1.5
309,577 + -1.1
309,577 + +0.8
309,578 - -2.2
309,578 - +0.5
309,599 + +0.5
309,599 + +0.1
309,639 + -2.0
309,640 - +0.9
309,679 + +0.5
309,679 + +0.5
309,679 + -0.1
309,679 + -1.6
309,679 + +0.2
309,679 + -0.2
309,679 + +0.7
309,679 + -0.9
309,679 + -0.8
309,680 - +0.3
309,680 - +1.9
309,680 - -0.1
309,699 + +0.1
309,699 + -0.7
309,699 + +0.1
309,699 + -0.9
309,700 - +0.9
309,700 - -0.3
309,700 - -2.0
309,700 - +0.9
309,700 - +0.1
309,723 - +0.1
309,781 - Sama_0270 0.11 -0.3
309,871 - Sama_0270 0.22 -1.6
309,881 + Sama_0270 0.24 -0.3
309,882 - Sama_0270 0.24 +0.9
309,882 - Sama_0270 0.24 -0.1
309,913 + Sama_0270 0.28 -2.2
309,914 - Sama_0270 0.28 -1.3
309,928 + Sama_0270 0.30 -1.4
309,928 + Sama_0270 0.30 +0.3
309,957 + Sama_0270 0.33 -1.3
309,957 + Sama_0270 0.33 -0.8
309,958 - Sama_0270 0.34 -1.1
310,041 + Sama_0270 0.44 -1.8
310,051 + Sama_0270 0.46 -1.0
310,052 - Sama_0270 0.46 -0.7
310,052 - Sama_0270 0.46 -2.1
310,052 - Sama_0270 0.46 -2.2
310,063 + Sama_0270 0.47 -2.2
310,101 - Sama_0270 0.52 +0.0
310,101 - Sama_0270 0.52 -0.4
310,210 + Sama_0270 0.66 -0.3
310,210 + Sama_0270 0.66 +0.5
310,220 + Sama_0270 0.68 -1.1
310,220 + Sama_0270 0.68 -0.9
310,220 + Sama_0270 0.68 -0.2
310,221 - Sama_0270 0.68 -0.9
310,225 + Sama_0270 0.68 -0.4
310,266 + Sama_0270 0.74 +0.1
310,266 + Sama_0270 0.74 +0.3
310,267 - Sama_0270 0.74 -0.9
310,267 - Sama_0270 0.74 +0.7
310,267 - Sama_0270 0.74 -0.4
310,267 - Sama_0270 0.74 -0.8
310,345 - Sama_0270 0.84 +0.1
310,363 + Sama_0270 0.86 +1.9
310,363 + Sama_0270 0.86 +0.3
310,425 + -1.6
310,426 - +0.2
310,426 - +0.9
310,482 + -0.4
310,482 + -0.2
310,482 + -1.1
310,483 - +0.8
310,513 + -0.9
310,514 - -1.9
310,564 + -0.9
310,579 + +0.3
310,580 - -1.6
310,580 - -1.2
310,580 - -0.2
310,580 - -0.7
310,580 - -0.6
310,644 - -0.5
310,644 - -0.3
310,690 + -0.4
310,690 + +1.3
310,690 + +0.1
310,691 - +0.9
310,691 - -0.0
310,745 + Sama_0271 0.13 -0.1
310,746 - Sama_0271 0.13 +0.0
310,772 + Sama_0271 0.15 -1.4
310,822 + Sama_0271 0.18 +0.0
310,823 - Sama_0271 0.18 -0.1
310,823 - Sama_0271 0.18 -0.4
310,886 + Sama_0271 0.23 +0.5
310,886 + Sama_0271 0.23 -1.4
310,977 - Sama_0271 0.29 +0.7
310,977 - Sama_0271 0.29 -0.8
310,996 - Sama_0271 0.30 +0.1
310,996 - Sama_0271 0.30 +0.0
311,007 - Sama_0271 0.31 -0.4
311,007 - Sama_0271 0.31 -0.7
311,009 + Sama_0271 0.31 -0.8
311,016 - Sama_0271 0.32 -0.7
311,016 - Sama_0271 0.32 +0.7
311,346 + Sama_0271 0.54 -1.1
311,347 - Sama_0271 0.54 -0.0
311,367 - Sama_0271 0.55 -0.7
311,367 - Sama_0271 0.55 +0.1
311,409 + Sama_0271 0.58 +0.9
311,409 + Sama_0271 0.58 +0.2
311,409 + Sama_0271 0.58 -0.5
311,409 + Sama_0271 0.58 +0.3
311,409 + Sama_0271 0.58 -0.5
311,409 + Sama_0271 0.58 -2.2
311,410 - Sama_0271 0.58 -0.4
311,410 - Sama_0271 0.58 -0.0
311,410 - Sama_0271 0.58 -0.3
311,410 - Sama_0271 0.58 +0.6
311,410 - Sama_0271 0.58 -1.2
311,410 - Sama_0271 0.58 -1.4
311,436 + Sama_0271 0.60 -0.0
311,437 - Sama_0271 0.60 -1.4
311,437 - Sama_0271 0.60 +1.5

Or see this region's nucleotide sequence