Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SOA0054 and SO_A0055 are separated by 8 nucleotides SO_A0055 and SOA0056 are separated by 76 nucleotides SOA0056 and SOA0057 are separated by 28 nucleotides SOA0057 and SO_A0058 are separated by 188 nucleotides
SO_A0053: SO_A0053 - ISSod1, transposase OrfA (NCBI), at 45,061 to 46,220
_A0053
SOA0054: SOA0054 - ISSod1, transposase OrfB (NCBI ptt file), at 45,411 to 46,220
SOA0054
SO_A0055: SO_A0055 - no description, at 46,229 to 46,534
_A0055
SOA0056: SOA0056 - hypothetical protein (NCBI ptt file), at 46,611 to 46,793
SOA0056
SOA0057: SOA0057 - hypothetical protein (NCBI ptt file), at 46,822 to 47,049
SOA0057
SO_A0058: SO_A0058 - hypothetical protein (NCBI), at 47,238 to 47,987
_A0058
Position (kb) 46
47
48 Strain fitness (log2 ratio) -2
-1
0
1 at 46.209 kb on + strand at 46.209 kb on + strand at 46.209 kb on + strand at 46.210 kb on + strand at 46.210 kb on + strand at 46.219 kb on + strand at 46.224 kb on + strand at 46.224 kb on + strand at 46.224 kb on + strand at 46.224 kb on + strand at 46.224 kb on + strand at 46.229 kb on + strand at 46.237 kb on - strand at 46.250 kb on - strand at 46.252 kb on - strand at 46.252 kb on - strand at 46.269 kb on + strand, within SO_A0055 at 46.287 kb on - strand, within SO_A0055 at 46.300 kb on + strand, within SO_A0055 at 46.300 kb on + strand, within SO_A0055 at 46.300 kb on + strand, within SO_A0055 at 46.300 kb on + strand, within SO_A0055 at 46.300 kb on + strand, within SO_A0055 at 46.300 kb on + strand, within SO_A0055 at 46.308 kb on - strand, within SO_A0055 at 46.308 kb on - strand, within SO_A0055 at 46.308 kb on - strand, within SO_A0055 at 46.308 kb on - strand, within SO_A0055 at 46.308 kb on - strand, within SO_A0055 at 46.308 kb on - strand, within SO_A0055 at 46.343 kb on + strand, within SO_A0055 at 46.343 kb on + strand, within SO_A0055 at 46.343 kb on + strand, within SO_A0055 at 46.349 kb on - strand, within SO_A0055 at 46.356 kb on + strand, within SO_A0055 at 46.359 kb on - strand, within SO_A0055 at 46.371 kb on - strand, within SO_A0055 at 46.374 kb on + strand, within SO_A0055 at 46.374 kb on + strand, within SO_A0055 at 46.377 kb on - strand, within SO_A0055 at 46.379 kb on + strand, within SO_A0055 at 46.382 kb on - strand, within SO_A0055 at 46.387 kb on - strand, within SO_A0055 at 46.409 kb on + strand, within SO_A0055 at 46.409 kb on + strand, within SO_A0055 at 46.409 kb on + strand, within SO_A0055 at 46.409 kb on + strand, within SO_A0055 at 46.409 kb on + strand, within SO_A0055 at 46.417 kb on - strand, within SO_A0055 at 46.419 kb on + strand, within SO_A0055 at 46.419 kb on + strand, within SO_A0055 at 46.421 kb on + strand, within SO_A0055 at 46.427 kb on - strand, within SO_A0055 at 46.427 kb on - strand, within SO_A0055 at 46.427 kb on - strand, within SO_A0055 at 46.427 kb on - strand, within SO_A0055 at 46.427 kb on - strand, within SO_A0055 at 46.427 kb on - strand, within SO_A0055 at 46.427 kb on - strand, within SO_A0055 at 46.431 kb on + strand, within SO_A0055 at 46.431 kb on + strand, within SO_A0055 at 46.431 kb on + strand, within SO_A0055 at 46.431 kb on + strand, within SO_A0055 at 46.439 kb on - strand, within SO_A0055 at 46.439 kb on - strand, within SO_A0055 at 46.637 kb on - strand, within SOA0056 at 46.637 kb on - strand, within SOA0056 at 46.659 kb on + strand, within SOA0056 at 46.660 kb on + strand, within SOA0056 at 46.660 kb on + strand, within SOA0056 at 46.668 kb on - strand, within SOA0056 at 46.677 kb on - strand, within SOA0056 at 46.799 kb on - strand at 46.801 kb on - strand at 46.935 kb on + strand, within SOA0057 at 47.034 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 46,209 + +0.6 46,209 + +1.1 46,209 + +0.4 46,210 + +0.0 46,210 + -0.3 46,219 + +0.1 46,224 + +0.5 46,224 + +0.5 46,224 + -0.2 46,224 + +0.8 46,224 + +0.2 46,229 + -0.5 46,237 - +0.2 46,250 - -0.5 46,252 - +0.6 46,252 - +0.5 46,269 + SO_A0055 0.13 -1.5 46,287 - SO_A0055 0.19 -1.5 46,300 + SO_A0055 0.23 -0.5 46,300 + SO_A0055 0.23 -0.1 46,300 + SO_A0055 0.23 -0.1 46,300 + SO_A0055 0.23 -1.1 46,300 + SO_A0055 0.23 -0.1 46,300 + SO_A0055 0.23 -0.2 46,308 - SO_A0055 0.26 +0.1 46,308 - SO_A0055 0.26 -0.5 46,308 - SO_A0055 0.26 -0.1 46,308 - SO_A0055 0.26 -0.1 46,308 - SO_A0055 0.26 +0.3 46,308 - SO_A0055 0.26 +0.3 46,343 + SO_A0055 0.37 +0.7 46,343 + SO_A0055 0.37 +0.5 46,343 + SO_A0055 0.37 -1.5 46,349 - SO_A0055 0.39 +0.5 46,356 + SO_A0055 0.42 +0.0 46,359 - SO_A0055 0.42 -0.1 46,371 - SO_A0055 0.46 +0.6 46,374 + SO_A0055 0.47 -0.1 46,374 + SO_A0055 0.47 -0.2 46,377 - SO_A0055 0.48 -0.1 46,379 + SO_A0055 0.49 +0.6 46,382 - SO_A0055 0.50 -0.3 46,387 - SO_A0055 0.52 +1.2 46,409 + SO_A0055 0.59 +0.2 46,409 + SO_A0055 0.59 +0.3 46,409 + SO_A0055 0.59 +0.5 46,409 + SO_A0055 0.59 -0.1 46,409 + SO_A0055 0.59 +1.3 46,417 - SO_A0055 0.61 +0.1 46,419 + SO_A0055 0.62 -0.2 46,419 + SO_A0055 0.62 -0.5 46,421 + SO_A0055 0.63 +0.4 46,427 - SO_A0055 0.65 -0.5 46,427 - SO_A0055 0.65 -0.9 46,427 - SO_A0055 0.65 -0.2 46,427 - SO_A0055 0.65 +0.2 46,427 - SO_A0055 0.65 +0.9 46,427 - SO_A0055 0.65 +0.8 46,427 - SO_A0055 0.65 -1.2 46,431 + SO_A0055 0.66 -0.5 46,431 + SO_A0055 0.66 +0.3 46,431 + SO_A0055 0.66 +1.0 46,431 + SO_A0055 0.66 +0.6 46,439 - SO_A0055 0.69 -0.3 46,439 - SO_A0055 0.69 -0.4 46,637 - SOA0056 0.14 -0.4 46,637 - SOA0056 0.14 -0.3 46,659 + SOA0056 0.26 +1.6 46,660 + SOA0056 0.27 -1.4 46,660 + SOA0056 0.27 -1.1 46,668 - SOA0056 0.31 +0.1 46,677 - SOA0056 0.36 -1.9 46,799 - -0.0 46,801 - +0.3 46,935 + SOA0057 0.50 -1.3 47,034 - +1.1
Or see this region's nucleotide sequence