Strain Fitness in Shewanella oneidensis MR-1 around SO4409

Experiment: 2-Furfuraldehyde 0.0625 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2-Furfuraldehyde 0.0625 vol%
4,601,917	-	bipA	SO4408	0.58	-0.8
4,601,917	-	bipA	SO4408	0.58	+1.0
4,601,917	-	bipA	SO4408	0.58	-0.4
4,601,917	-	bipA	SO4408	0.58	-0.9
4,601,987	-	bipA	SO4408	0.62	+0.0
4,601,987	-	bipA	SO4408	0.62	+0.1
4,602,119	-	bipA	SO4408	0.69	+0.6
4,602,127	-	bipA	SO4408	0.70	-0.1
4,602,239	+	bipA	SO4408	0.76	+0.2
4,602,284	-	bipA	SO4408	0.78	-0.1
4,602,310	+	bipA	SO4408	0.80	+0.3
4,602,310	+	bipA	SO4408	0.80	-0.1
4,602,318	-	bipA	SO4408	0.80	-0.9
4,602,318	-	bipA	SO4408	0.80	+0.9
4,602,318	-	bipA	SO4408	0.80	-0.1
4,602,375	+	bipA	SO4408	0.83	-1.1
4,602,381	+	bipA	SO4408	0.84	-0.0
4,602,402	+	bipA	SO4408	0.85	-0.6
4,602,402	+	bipA	SO4408	0.85	-0.1
4,602,402	+	bipA	SO4408	0.85	-0.4
4,602,402	+	bipA	SO4408	0.85	+0.7
4,602,402	+	bipA	SO4408	0.85	-0.3
4,602,410	-	bipA	SO4408	0.85	+0.5
4,602,410	-	bipA	SO4408	0.85	-0.6
4,602,425	-	bipA	SO4408	0.86	-1.5
4,602,445	+	bipA	SO4408	0.87	-0.3
4,602,445	+	bipA	SO4408	0.87	-0.4
4,602,445	+	bipA	SO4408	0.87	-0.5
4,602,445	+	bipA	SO4408	0.87	+0.4
4,602,445	+	bipA	SO4408	0.87	-0.4
4,602,453	-	bipA	SO4408	0.88	-1.1
4,602,453	-	bipA	SO4408	0.88	-0.5
4,602,461	-	bipA	SO4408	0.88	-0.5
4,602,651	-				+0.5
4,602,758	-				+0.1
4,602,772	+				-0.7
4,602,883	+				+0.5
4,602,989	-		SO4409	0.48	-1.6
4,603,054	+		SO4409	0.87	-0.6
4,603,061	+				-1.0
4,603,092	+				+0.0
4,603,130	-				-0.0
4,603,131	-				+0.3
4,603,227	-				+0.4
4,603,250	+				-0.1
4,603,269	-				+0.9
4,603,323	-				+0.7
4,603,339	+				-0.0
4,603,347	-				+0.2
4,603,454	-				-0.1
4,603,629	+				+1.3
4,603,637	-				-0.3
4,603,678	-				+1.2
4,603,746	-				-1.5
4,603,757	+				-1.3
4,603,808	+	glnA	SO4410	0.11	-0.5
4,603,904	+	glnA	SO4410	0.18	+1.0
4,603,904	+	glnA	SO4410	0.18	-1.1
4,604,026	+	glnA	SO4410	0.26	-1.7
4,604,026	+	glnA	SO4410	0.26	-0.1
4,604,026	+	glnA	SO4410	0.26	+0.3
4,604,026	+	glnA	SO4410	0.26	-0.7
4,604,034	-	glnA	SO4410	0.27	-1.3