Strain Fitness in Shewanella oneidensis MR-1 around SO3943

Experiment: 2-Furfuraldehyde 0.0625 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO3942 and degS are separated by 125 nucleotidesdegS and SO3944 are separated by 115 nucleotides SO3942: SO3942 - serine protease, HtrA/DegQ/DegS family (NCBI ptt file), at 4,087,110 to 4,088,462 SO3942 SO3943: degS - protease DegS (NCBI ptt file), at 4,088,588 to 4,089,670 degS SO3944: SO3944 - ISSod4, transposase (NCBI ptt file), at 4,089,786 to 4,090,988 SO3944 Position (kb) 4088 4089 4090Strain fitness (log2 ratio) -3 -2 -1 0 1at 4088.625 kb on - strandat 4088.737 kb on + strand, within degSat 4089.087 kb on + strand, within degSat 4089.096 kb on - strand, within degSat 4089.152 kb on - strand, within degSat 4089.343 kb on + strand, within degSat 4089.417 kb on + strand, within degSat 4089.504 kb on - strand, within degSat 4089.694 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol%
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4,088,625 - -3.1
4,088,737 + degS SO3943 0.14 -2.3
4,089,087 + degS SO3943 0.46 -1.4
4,089,096 - degS SO3943 0.47 -2.0
4,089,152 - degS SO3943 0.52 -0.5
4,089,343 + degS SO3943 0.70 -0.3
4,089,417 + degS SO3943 0.77 +0.1
4,089,504 - degS SO3943 0.85 -0.6
4,089,694 + +0.2

Or see this region's nucleotide sequence