Strain Fitness in Shewanella oneidensis MR-1 around SO3780

Experiment: 2-Furfuraldehyde 0.0625 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2-Furfuraldehyde 0.0625 vol%
3,930,212	-	cydC	SO3779	0.51	-1.5
3,930,304	-	cydC	SO3779	0.56	-2.5
3,930,356	-	cydC	SO3779	0.59	-1.5
3,930,377	-	cydC	SO3779	0.60	-3.0
3,930,828	+	cydC	SO3779	0.86	-2.0
3,930,905	-				+0.7
3,930,965	-				-1.1
3,931,008	+				-1.6
3,931,205	+				-2.4
3,931,213	-				-1.1
3,931,300	+	cydD	SO3780	0.12	-1.0
3,931,308	-	cydD	SO3780	0.12	+0.1
3,931,323	+	cydD	SO3780	0.13	-1.3
3,931,349	+	cydD	SO3780	0.14	-1.7
3,931,357	-	cydD	SO3780	0.15	-1.8
3,931,357	-	cydD	SO3780	0.15	-3.7
3,931,362	+	cydD	SO3780	0.15	-2.3
3,931,370	-	cydD	SO3780	0.15	-2.6
3,931,375	+	cydD	SO3780	0.16	-2.2
3,931,375	+	cydD	SO3780	0.16	-1.6
3,931,375	+	cydD	SO3780	0.16	-1.1
3,931,383	-	cydD	SO3780	0.16	+2.7
3,931,383	-	cydD	SO3780	0.16	-1.3
3,931,385	+	cydD	SO3780	0.16	-1.3
3,931,385	+	cydD	SO3780	0.16	-2.1
3,931,393	-	cydD	SO3780	0.16	-1.1
3,931,393	-	cydD	SO3780	0.16	-2.6
3,931,393	-	cydD	SO3780	0.16	-1.4
3,931,393	-	cydD	SO3780	0.16	-1.3
3,931,393	-	cydD	SO3780	0.16	-1.9
3,931,458	-	cydD	SO3780	0.20	-0.9
3,931,631	+	cydD	SO3780	0.29	-2.3
3,931,631	+	cydD	SO3780	0.29	-2.3
3,931,781	+	cydD	SO3780	0.36	-1.5
3,931,796	+	cydD	SO3780	0.37	-0.0
3,931,898	-	cydD	SO3780	0.43	+0.1
3,931,970	+	cydD	SO3780	0.46	-3.6
3,931,970	+	cydD	SO3780	0.46	-1.5
3,932,017	+	cydD	SO3780	0.49	-0.2
3,932,344	+	cydD	SO3780	0.65	-0.5
3,932,344	+	cydD	SO3780	0.65	-0.5
3,932,352	-	cydD	SO3780	0.66	-2.8
3,932,446	+	cydD	SO3780	0.71	-2.2
3,932,697	+	cydD	SO3780	0.84	-2.1
3,932,735	+	cydD	SO3780	0.86	-2.1
3,932,735	+	cydD	SO3780	0.86	-1.9
3,932,735	+	cydD	SO3780	0.86	-2.2
3,932,735	+	cydD	SO3780	0.86	-0.3
3,932,737	-	cydD	SO3780	0.86	-1.1
3,932,755	+	cydD	SO3780	0.87	-1.4
3,932,764	-	cydD	SO3780	0.87	-1.2
3,932,862	+				-1.0
3,932,870	-				-0.3
3,933,105	+				-0.5
3,933,113	-				-0.6
3,933,120	+				-0.1
3,933,143	+				-0.4
3,933,143	+				-0.1
3,933,256	-				-0.5
3,933,262	-				+1.5
3,933,264	+				+0.1
3,933,317	+				-0.6
3,933,317	+				+0.3
3,933,325	-				-0.6
3,933,328	+				-1.6
3,933,333	+				-0.3
3,933,336	-				+0.9
3,933,341	-				+0.5
3,933,362	+				+1.7
3,933,362	+				+0.4
3,933,362	+				-0.1
3,933,370	-				+1.4
3,933,556	+		SO3781	0.29	-0.3
3,933,653	+		SO3781	0.48	-0.9
3,933,705	-		SO3781	0.58	-0.4
3,933,730	+		SO3781	0.63	+0.5
3,933,730	+		SO3781	0.63	+0.7
3,933,766	+		SO3781	0.70	+0.5
3,933,854	+		SO3781	0.87	+0.1
3,933,905	+				+0.0
3,933,913	-				-0.5
3,933,950	+				+0.7