Strain Fitness in Shewanella oneidensis MR-1 around SO3292
Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 2-Furfuraldehyde 0.0625 vol% |
---|---|---|---|---|---|
remove | |||||
3,434,809 | - | +1.0 | |||
3,434,809 | - | -0.5 | |||
3,434,809 | - | +0.4 | |||
3,434,950 | + | +0.6 | |||
3,435,011 | + | +0.2 | |||
3,435,667 | + | -0.4 | |||
3,435,876 | - | guaA | SO3292 | 0.13 | -2.2 |
3,436,076 | + | guaA | SO3292 | 0.25 | -0.6 |
3,436,108 | + | guaA | SO3292 | 0.27 | -0.6 |
3,436,624 | + | guaA | SO3292 | 0.60 | +0.3 |
3,436,711 | - | guaA | SO3292 | 0.66 | -2.2 |
3,436,839 | + | guaA | SO3292 | 0.74 | -2.5 |
3,436,882 | + | guaA | SO3292 | 0.76 | +0.6 |
3,436,882 | + | guaA | SO3292 | 0.76 | -1.7 |
3,436,882 | - | guaA | SO3292 | 0.76 | -1.3 |
3,436,890 | - | guaA | SO3292 | 0.77 | +0.4 |
3,436,900 | - | guaA | SO3292 | 0.78 | -1.3 |
3,436,973 | + | guaA | SO3292 | 0.82 | +0.6 |
3,436,973 | + | guaA | SO3292 | 0.82 | +0.2 |
3,437,098 | - | +0.1 | |||
3,437,840 | + | guaB | SO3293 | 0.32 | +0.4 |
3,437,840 | + | guaB | SO3293 | 0.32 | -1.2 |
3,437,932 | - | guaB | SO3293 | 0.38 | +1.0 |
3,437,935 | + | guaB | SO3293 | 0.39 | -1.4 |
3,437,967 | + | -0.4 | |||
3,438,044 | + | guaB | SO3293 | 0.46 | -0.5 |
3,438,117 | + | +1.2 | |||
3,438,117 | + | guaB | SO3293 | 0.51 | -0.9 |
3,438,125 | - | guaB | SO3293 | 0.52 | +1.0 |
3,438,148 | - | guaB | SO3293 | 0.53 | -0.5 |
3,438,188 | + | guaB | SO3293 | 0.56 | -0.9 |
3,438,236 | + | +1.2 | |||
3,438,244 | - | guaB | SO3293 | 0.60 | -0.7 |
3,438,248 | + | guaB | SO3293 | 0.60 | -0.2 |
Or see this region's nucleotide sequence