Strain Fitness in Shewanella oneidensis MR-1 around SO3186

Experiment: 2-Furfuraldehyde 0.0625 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2-Furfuraldehyde 0.0625 vol%
3,323,543	-				-1.0
3,323,545	-				-0.4
3,323,545	-				-1.4
3,323,545	-				-0.7
3,323,551	+				-0.7
3,323,587	+		SO3185	0.11	+0.1
3,323,587	+		SO3185	0.11	-0.4
3,323,587	+		SO3185	0.11	-1.8
3,323,589	-		SO3185	0.11	+0.2
3,323,595	-		SO3185	0.12	-0.2
3,323,595	-		SO3185	0.12	-1.9
3,323,599	+		SO3185	0.12	-0.7
3,323,607	-		SO3185	0.13	+0.1
3,323,607	-		SO3185	0.13	-0.1
3,323,607	-		SO3185	0.13	-0.4
3,323,607	-		SO3185	0.13	-1.5
3,323,614	-		SO3185	0.13	-0.6
3,323,614	-		SO3185	0.13	-0.6
3,323,648	-		SO3185	0.17	-0.0
3,323,681	-		SO3185	0.20	+0.1
3,323,767	+		SO3185	0.28	-1.7
3,323,796	+		SO3185	0.30	+0.3
3,323,796	+		SO3185	0.30	+0.4
3,323,796	+		SO3185	0.30	-0.4
3,323,804	-		SO3185	0.31	-3.3
3,323,804	-		SO3185	0.31	+0.4
3,323,804	-		SO3185	0.31	-0.7
3,323,847	-		SO3185	0.35	-0.9
3,323,847	-		SO3185	0.35	+0.6
3,323,847	-		SO3185	0.35	-0.4
3,323,847	-		SO3185	0.35	-0.4
3,323,852	-		SO3185	0.35	+0.6
3,323,873	-				+1.6
3,323,891	+		SO3185	0.39	-1.4
3,323,899	-		SO3185	0.40	-1.1
3,323,899	-		SO3185	0.40	+0.1
3,323,899	-		SO3185	0.40	-1.4
3,323,975	+		SO3185	0.47	+0.2
3,323,980	+		SO3185	0.47	-0.4
3,323,980	+		SO3185	0.47	+1.2
3,323,980	+		SO3185	0.47	-1.0
3,323,980	+		SO3185	0.47	+0.6
3,323,980	+		SO3185	0.47	-1.7
3,323,980	+		SO3185	0.47	-0.3
3,323,980	+		SO3185	0.47	-1.8
3,323,983	-		SO3185	0.48	-0.6
3,323,983	-		SO3185	0.48	+0.3
3,323,988	-		SO3185	0.48	+0.6
3,323,988	-		SO3185	0.48	+1.5
3,323,988	-		SO3185	0.48	+0.0
3,323,988	-		SO3185	0.48	-0.4
3,323,988	-		SO3185	0.48	-1.3
3,323,988	-		SO3185	0.48	+0.9
3,323,988	-		SO3185	0.48	-0.4
3,323,988	-		SO3185	0.48	-0.7
3,323,988	-		SO3185	0.48	-2.5
3,324,024	-		SO3185	0.51	-0.3
3,324,048	-		SO3185	0.54	-0.6
3,324,094	-		SO3185	0.58	-0.5
3,324,096	-		SO3185	0.58	-1.9
3,324,154	+		SO3185	0.64	+1.2
3,324,155	+		SO3185	0.64	-0.1
3,324,155	+		SO3185	0.64	-1.9
3,324,162	-		SO3185	0.64	-0.9
3,324,164	+		SO3185	0.64	-0.7
3,324,170	-		SO3185	0.65	-2.4
3,324,170	-		SO3185	0.65	+1.6
3,324,172	-		SO3185	0.65	-0.0
3,324,172	-		SO3185	0.65	+0.3
3,324,179	-		SO3185	0.66	-1.5
3,324,188	-		SO3185	0.67	+0.6
3,324,189	-		SO3185	0.67	-0.4
3,324,219	+				-0.9
3,324,227	-		SO3185	0.70	-0.6
3,324,227	-		SO3185	0.70	-0.6
3,324,237	+		SO3185	0.71	+0.4
3,324,244	+		SO3185	0.72	+0.2
3,324,244	+		SO3185	0.72	+0.3
3,324,244	-		SO3185	0.72	+0.1
3,324,244	-		SO3185	0.72	-0.7
3,324,252	-		SO3185	0.73	+1.4
3,324,252	-		SO3185	0.73	-0.6
3,324,252	-		SO3185	0.73	-0.8
3,324,267	+		SO3185	0.74	+0.6
3,324,268	+		SO3185	0.74	-1.2
3,324,274	-		SO3185	0.75	-0.4
3,324,275	-		SO3185	0.75	+1.1
3,324,275	-		SO3185	0.75	+0.3
3,324,276	-		SO3185	0.75	+0.5
3,324,279	+		SO3185	0.75	+0.4
3,324,291	+		SO3185	0.76	-1.5
3,324,316	-		SO3185	0.79	-0.4
3,324,341	-		SO3185	0.81	-1.4
3,324,346	-		SO3185	0.81	+0.4
3,324,356	-		SO3185	0.82	+0.4
3,324,383	-		SO3185	0.85	-0.7
3,324,391	-		SO3185	0.86	-1.2
3,324,408	-		SO3185	0.87	-0.0
3,324,413	-		SO3185	0.88	-1.9
3,324,415	-		SO3185	0.88	-1.0
3,324,415	-		SO3185	0.88	-1.4
3,324,415	-		SO3185	0.88	+0.2
3,324,415	-		SO3185	0.88	-0.3
3,324,415	-		SO3185	0.88	-1.2
3,324,415	-		SO3185	0.88	-0.2
3,324,415	-		SO3185	0.88	-0.8
3,324,415	-		SO3185	0.88	-0.4
3,324,415	-		SO3185	0.88	-2.2
3,324,439	+				-2.6
3,324,439	+				-0.9
3,324,443	-				-1.4
3,324,447	-				-0.1
3,324,447	-				-0.1
3,324,463	+				-2.9
3,324,468	+				+0.5
3,324,471	-				+0.5
3,324,471	-				-0.6
3,324,486	+				+0.2
3,324,486	+				-1.6
3,324,486	+				+0.1
3,324,493	-				-0.5
3,324,494	-				-0.0
3,324,494	-				-0.7
3,324,494	-				-0.2
3,324,497	-				-0.9
3,324,497	-				+1.1
3,324,640	+	rfbA	SO3186	0.11	-0.8
3,324,673	+	rfbA	SO3186	0.14	-0.8
3,324,718	+	rfbA	SO3186	0.19	-0.4
3,324,718	+	rfbA	SO3186	0.19	+0.6
3,324,718	+	rfbA	SO3186	0.19	-1.1
3,324,726	-	rfbA	SO3186	0.20	-2.5
3,324,726	-	rfbA	SO3186	0.20	-1.4
3,324,726	-	rfbA	SO3186	0.20	-3.9
3,324,726	-	rfbA	SO3186	0.20	-1.7
3,324,745	+	rfbA	SO3186	0.22	-1.4
3,324,753	-	rfbA	SO3186	0.23	-2.7
3,324,753	-	rfbA	SO3186	0.23	+0.6
3,324,812	+	rfbA	SO3186	0.29	-2.4
3,324,820	-	rfbA	SO3186	0.30	-3.5
3,324,849	+	rfbA	SO3186	0.33	-0.5
3,324,894	+	rfbA	SO3186	0.38	-1.9
3,325,000	+	rfbA	SO3186	0.50	-1.7
3,325,008	-	rfbA	SO3186	0.51	-1.7
3,325,014	+	rfbA	SO3186	0.51	+0.1
3,325,022	-	rfbA	SO3186	0.52	-0.9
3,325,022	-	rfbA	SO3186	0.52	-1.7
3,325,030	-	rfbA	SO3186	0.53	-2.4
3,325,040	-	rfbA	SO3186	0.54	-0.9
3,325,108	-	rfbA	SO3186	0.62	+1.2
3,325,139	-	rfbA	SO3186	0.65	-0.7
3,325,169	-	rfbA	SO3186	0.68	-1.4
3,325,169	-	rfbA	SO3186	0.68	-2.9
3,325,173	+	rfbA	SO3186	0.69	-1.7
3,325,173	+	rfbA	SO3186	0.69	-0.9
3,325,173	+	rfbA	SO3186	0.69	-1.5
3,325,191	-	rfbA	SO3186	0.71	-0.4
3,325,191	-	rfbA	SO3186	0.71	-2.2
3,325,248	-	rfbA	SO3186	0.77	-2.2
3,325,290	+	rfbA	SO3186	0.82	-1.7
3,325,298	-	rfbA	SO3186	0.83	-0.6
3,325,298	-	rfbA	SO3186	0.83	-2.2
3,325,334	-	rfbA	SO3186	0.86	-2.2
3,325,336	+	rfbA	SO3186	0.87	+0.1
3,325,344	-	rfbA	SO3186	0.88	-2.5
3,325,400	+				-3.1
3,325,444	-				-2.5
3,325,445	-				+0.4
3,325,478	+				-0.8
3,325,486	-				-0.1
3,325,540	+				-2.2
3,325,548	-				-0.1
3,325,548	-				-0.3
3,325,556	-				+1.0
3,325,570	-				+0.2
3,325,570	-				-0.3
3,325,576	+				-0.6
3,325,579	+				-0.6
3,325,659	+				-1.7
3,325,659	+				-0.4
3,325,659	+				+0.1
3,325,659	+				+0.3
3,325,659	+				+0.4
3,325,659	+				-0.8
3,325,659	+				-0.6
3,325,659	+				-1.0
3,325,659	+				+0.8
3,325,667	-				-0.0
3,325,667	-				+0.2
3,325,667	-				-0.1
3,325,667	-				-0.4
3,325,667	-				-0.7
3,325,667	-				+0.1
3,325,667	-				-0.8
3,325,667	-				-0.4
3,325,667	-				+1.2
3,325,667	-				-0.7
3,325,667	-				-0.2
3,325,667	-				-0.6
3,325,669	+				+0.3
3,325,669	+				-0.1
3,325,676	-				-0.4
3,325,677	-				+0.1
3,325,781	+				-0.4
3,325,877	+				-0.2
3,325,905	-				-1.2
3,325,905	-				+0.6
3,325,917	-				-0.5
3,325,917	-				+0.2
3,325,917	-				-1.5
3,325,917	-				-1.2
3,325,927	+				-0.7
3,325,938	+				-0.2
3,325,938	+				+0.6
3,325,946	-				-0.4
3,325,946	-				+0.1
3,325,979	+				+0.1
3,325,979	+				+0.1
3,325,987	-				+0.5
3,325,997	+				-2.4
3,326,002	+				-0.7
3,326,005	-				-0.2
3,326,056	-	rfbB	SO3188	0.13	-0.9
3,326,395	-	rfbB	SO3188	0.43	-0.8