Strain Fitness in Shewanella oneidensis MR-1 around SO3025

Experiment: 2-Furfuraldehyde 0.0625 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2-Furfuraldehyde 0.0625 vol%
3,136,061	+				-1.2
3,136,092	+				+0.5
3,136,150	+	trpA	SO3024	0.11	+0.4
3,136,160	-	trpA	SO3024	0.12	+0.0
3,136,183	+	trpA	SO3024	0.14	+0.6
3,136,191	-	trpA	SO3024	0.15	+0.4
3,136,191	-	trpA	SO3024	0.15	-0.2
3,136,218	+	trpA	SO3024	0.19	-0.4
3,136,242	+	trpA	SO3024	0.22	+0.7
3,136,339	+	trpA	SO3024	0.33	+0.1
3,136,390	+	trpA	SO3024	0.39	+1.2
3,136,390	+	trpA	SO3024	0.39	-1.0
3,136,409	+	trpA	SO3024	0.41	+0.6
3,136,417	-	trpA	SO3024	0.42	+0.1
3,136,417	-	trpA	SO3024	0.42	+0.4
3,136,530	+	trpA	SO3024	0.56	+0.2
3,136,532	-	trpA	SO3024	0.56	+0.2
3,136,532	-	trpA	SO3024	0.56	-0.5
3,136,538	-	trpA	SO3024	0.57	-1.6
3,136,610	+	trpA	SO3024	0.65	+0.4
3,136,618	-	trpA	SO3024	0.66	-0.5
3,136,722	+	trpA	SO3024	0.79	-0.9
3,136,757	-	trpA	SO3024	0.83	+0.2
3,136,757	-	trpA	SO3024	0.83	+0.4
3,136,987	+				+0.6
3,136,987	+				+1.1
3,137,004	+				+0.2
3,137,004	+				+0.1
3,137,012	-				+0.2
3,137,286	+		SO3025	0.30	+0.5
3,137,386	+		SO3025	0.40	+0.8
3,137,466	+		SO3025	0.48	-0.6
3,137,479	-		SO3025	0.49	+0.6
3,137,704	-		SO3025	0.72	+0.9
3,137,707	-		SO3025	0.72	+0.6
3,137,922	-				+0.8
3,137,922	-				-0.3
3,137,932	-				+0.6
3,138,025	+				+0.4
3,138,074	+				-0.6
3,138,151	-				-0.5
3,138,151	-				+1.2
3,138,420	-				+0.5
3,138,570	-		SO3027	0.12	-0.8
3,138,577	-		SO3027	0.13	+0.5
3,138,857	+		SO3027	0.76	-0.9
3,138,865	-		SO3027	0.78	-0.5
3,138,909	+		SO3027	0.88	-0.1
3,138,909	+		SO3027	0.88	-0.2
3,138,956	+				-0.4