Strain Fitness in Shewanella oneidensis MR-1 around SO2731

Experiment: 2-Furfuraldehyde 0.0625 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2-Furfuraldehyde 0.0625 vol%
2,846,169	-	pepE	SO2730	0.52	-1.4
2,846,225	-	pepE	SO2730	0.60	+0.3
2,846,240	+	pepE	SO2730	0.62	-0.6
2,846,248	-	pepE	SO2730	0.63	-0.2
2,846,375	+	pepE	SO2730	0.81	-0.0
2,846,383	-	pepE	SO2730	0.82	+0.5
2,846,383	-	pepE	SO2730	0.82	+0.1
2,846,393	-	pepE	SO2730	0.84	+0.4
2,846,401	+	pepE	SO2730	0.85	-0.7
2,846,409	-	pepE	SO2730	0.86	+1.1
2,846,477	-				+0.2
2,846,515	+				-0.1
2,846,523	+				-0.4
2,846,523	-				+0.0
2,846,940	+				+0.4
2,846,940	+				+0.9
2,846,940	+				+0.4
2,846,948	-				+0.3
2,846,948	-				-0.2
2,847,018	-				-1.2
2,847,178	-				-1.3
2,847,238	+				-0.8
2,847,279	+				-0.4
2,847,324	+	mdoG-2	SO2731	0.10	-1.8
2,847,395	-	mdoG-2	SO2731	0.15	+0.6
2,847,418	-	mdoG-2	SO2731	0.16	-1.6
2,847,557	-	mdoG-2	SO2731	0.25	-2.1
2,847,620	+	mdoG-2	SO2731	0.29	-1.9
2,847,660	-	mdoG-2	SO2731	0.31	-1.3
2,847,744	+	mdoG-2	SO2731	0.37	-1.5
2,847,752	-	mdoG-2	SO2731	0.37	+1.0
2,847,794	+	mdoG-2	SO2731	0.40	-0.9
2,847,794	+	mdoG-2	SO2731	0.40	-1.4
2,847,802	-	mdoG-2	SO2731	0.40	-0.7
2,847,802	-	mdoG-2	SO2731	0.40	+0.6
2,847,802	-	mdoG-2	SO2731	0.40	-1.2
2,847,807	+	mdoG-2	SO2731	0.41	-0.6
2,847,842	+	mdoG-2	SO2731	0.43	+0.6
2,848,029	+	mdoG-2	SO2731	0.55	-3.0
2,848,065	+	mdoG-2	SO2731	0.57	-1.2
2,848,076	-	mdoG-2	SO2731	0.58	+0.4
2,848,078	-	mdoG-2	SO2731	0.58	-1.6
2,848,100	+	mdoG-2	SO2731	0.59	-2.3
2,848,100	+	mdoG-2	SO2731	0.59	-1.1
2,848,181	+	mdoG-2	SO2731	0.64	-0.8
2,848,362	+	mdoG-2	SO2731	0.76	+0.6
2,848,370	-	mdoG-2	SO2731	0.76	-1.0
2,848,372	+	mdoG-2	SO2731	0.76	-1.4
2,848,390	-	mdoG-2	SO2731	0.77	-1.0
2,848,465	+	mdoG-2	SO2731	0.82	-0.0
2,848,571	+	mdoG-2	SO2731	0.89	-2.4
2,848,572	+	mdoG-2	SO2731	0.89	-3.4
2,848,618	-				-1.4
2,848,618	-				-0.3
2,848,745	-				-0.4
2,848,844	-				+0.1