Strain Fitness in Shewanella oneidensis MR-1 around SO1333

Experiment: 2-Furfuraldehyde 0.0625 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	2-Furfuraldehyde 0.0625 vol%
1,390,448	-	ptsP	SO1332	0.59	-0.7
1,390,448	-	ptsP	SO1332	0.59	-1.0
1,390,448	-	ptsP	SO1332	0.59	+0.4
1,390,553	+	ptsP	SO1332	0.64	+0.3
1,390,553	+	ptsP	SO1332	0.64	-1.1
1,390,553	+	ptsP	SO1332	0.64	+0.5
1,390,553	+	ptsP	SO1332	0.64	+0.8
1,390,553	+	ptsP	SO1332	0.64	+1.2
1,390,553	+				-0.3
1,390,553	+	ptsP	SO1332	0.64	+0.2
1,390,553	+	ptsP	SO1332	0.64	+0.6
1,390,561	-	ptsP	SO1332	0.64	-0.4
1,390,561	-	ptsP	SO1332	0.64	+0.5
1,390,561	-	ptsP	SO1332	0.64	+0.0
1,390,584	+	ptsP	SO1332	0.66	+1.1
1,390,584	+	ptsP	SO1332	0.66	-0.8
1,390,597	-	ptsP	SO1332	0.66	-0.0
1,390,607	-	ptsP	SO1332	0.67	+0.0
1,390,607	-	ptsP	SO1332	0.67	-0.2
1,390,673	+	ptsP	SO1332	0.69	+0.4
1,390,695	-	ptsP	SO1332	0.70	+0.1
1,390,730	+	ptsP	SO1332	0.72	+0.7
1,390,730	+	ptsP	SO1332	0.72	-1.2
1,390,738	-	ptsP	SO1332	0.72	+0.1
1,390,818	+	ptsP	SO1332	0.76	-0.0
1,390,828	+	ptsP	SO1332	0.76	+0.8
1,390,828	+	ptsP	SO1332	0.76	+1.2
1,390,828	+	ptsP	SO1332	0.76	-0.1
1,390,828	+	ptsP	SO1332	0.76	+0.5
1,390,828	+	ptsP	SO1332	0.76	+0.1
1,390,828	+	ptsP	SO1332	0.76	-0.6
1,390,836	-	ptsP	SO1332	0.77	-0.3
1,390,836	-	ptsP	SO1332	0.77	-0.0
1,390,836	-	ptsP	SO1332	0.77	+0.1
1,390,836	-	ptsP	SO1332	0.77	+1.5
1,390,836	-	ptsP	SO1332	0.77	+0.5
1,390,836	-	ptsP	SO1332	0.77	-0.1
1,390,926	-	ptsP	SO1332	0.81	+0.5
1,390,999	+	ptsP	SO1332	0.84	-0.0
1,391,008	+	ptsP	SO1332	0.84	+0.3
1,391,029	-	ptsP	SO1332	0.85	-0.5
1,391,065	+	ptsP	SO1332	0.87	+0.6
1,391,079	+	ptsP	SO1332	0.88	-0.6
1,391,087	-	ptsP	SO1332	0.88	-0.3
1,391,131	-				-0.6
1,391,198	-				-1.1
1,391,208	-				-0.8
1,391,267	+				+0.4
1,391,267	+				+3.0
1,391,275	-				-0.0
1,391,295	-				-0.6
1,391,295	-				-1.1
1,391,370	+				-0.4
1,391,402	+				-0.8
1,391,480	+				+1.0
1,391,480	+				+1.1
1,391,514	+				-1.2
1,391,689	+		SO1333	0.32	-0.8
1,391,808	-		SO1333	0.47	-2.3
1,392,040	+		SO1333	0.77	-1.9