Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ahpC and pepA-1 are separated by 341 nucleotides pepA-1 and SO0960 are separated by 89 nucleotides
SO0958: ahpC - alkyl hydroperoxide reductase, C subunit (NCBI ptt file), at 993,033 to 993,602
ahpC
SO0959: pepA-1 - cytosol aminopeptidase (NCBI ptt file), at 993,944 to 995,479
pepA-1
SO0960: SO0960 - hypothetical spermidine synthase (NCBI ptt file), at 995,569 to 996,312
SO0960
Position (kb) 993
994
995
996 Strain fitness (log2 ratio) -1
0
1
2
3 at 992.999 kb on + strand at 993.050 kb on + strand at 993.050 kb on + strand at 993.058 kb on - strand at 993.062 kb on + strand at 993.087 kb on + strand at 993.134 kb on - strand, within ahpC at 993.136 kb on + strand, within ahpC at 993.171 kb on + strand, within ahpC at 993.230 kb on - strand, within ahpC at 993.242 kb on + strand, within ahpC at 993.242 kb on + strand, within ahpC at 993.250 kb on - strand, within ahpC at 993.250 kb on - strand, within ahpC at 993.257 kb on - strand, within ahpC at 993.356 kb on - strand, within ahpC at 993.395 kb on + strand, within ahpC at 993.441 kb on + strand, within ahpC at 993.549 kb on - strand at 993.590 kb on - strand at 993.682 kb on - strand at 993.684 kb on - strand at 993.784 kb on + strand at 993.921 kb on - strand at 993.970 kb on + strand at 994.068 kb on + strand at 994.076 kb on - strand at 994.076 kb on - strand at 994.130 kb on + strand, within pepA-1 at 994.234 kb on + strand, within pepA-1 at 994.298 kb on - strand, within pepA-1 at 994.391 kb on + strand, within pepA-1 at 994.431 kb on - strand, within pepA-1 at 994.559 kb on + strand, within pepA-1 at 994.567 kb on - strand, within pepA-1 at 994.590 kb on + strand, within pepA-1 at 994.603 kb on + strand, within pepA-1 at 994.649 kb on + strand, within pepA-1 at 994.657 kb on - strand, within pepA-1 at 994.657 kb on - strand, within pepA-1 at 994.703 kb on - strand, within pepA-1 at 994.762 kb on + strand, within pepA-1 at 994.770 kb on - strand, within pepA-1 at 994.809 kb on - strand, within pepA-1 at 994.844 kb on + strand, within pepA-1 at 994.872 kb on + strand, within pepA-1 at 995.019 kb on - strand, within pepA-1 at 995.034 kb on - strand, within pepA-1 at 995.034 kb on - strand, within pepA-1 at 995.044 kb on + strand, within pepA-1 at 995.044 kb on + strand, within pepA-1 at 995.047 kb on - strand, within pepA-1 at 995.052 kb on - strand, within pepA-1 at 995.054 kb on + strand, within pepA-1 at 995.132 kb on + strand, within pepA-1 at 995.224 kb on + strand, within pepA-1 at 995.232 kb on - strand, within pepA-1 at 995.338 kb on + strand at 995.338 kb on + strand at 995.346 kb on + strand at 995.354 kb on - strand at 995.356 kb on + strand at 995.356 kb on + strand at 995.356 kb on + strand at 995.356 kb on + strand at 995.356 kb on + strand at 995.356 kb on + strand at 995.364 kb on - strand at 995.364 kb on - strand at 995.364 kb on - strand at 995.424 kb on + strand at 995.425 kb on + strand at 995.432 kb on - strand at 995.435 kb on + strand at 995.435 kb on + strand at 995.443 kb on - strand at 995.443 kb on - strand at 995.500 kb on - strand at 995.500 kb on - strand at 995.504 kb on + strand at 995.512 kb on - strand at 995.526 kb on + strand at 995.526 kb on + strand at 995.526 kb on + strand at 995.534 kb on - strand at 995.534 kb on - strand at 995.534 kb on - strand at 995.534 kb on - strand at 995.549 kb on - strand at 995.632 kb on + strand at 995.701 kb on + strand, within SO0960 at 995.709 kb on - strand, within SO0960 at 995.859 kb on + strand, within SO0960 at 995.875 kb on - strand, within SO0960 at 995.875 kb on - strand, within SO0960 at 995.887 kb on + strand, within SO0960 at 995.999 kb on + strand, within SO0960 at 996.072 kb on + strand, within SO0960 at 996.072 kb on + strand, within SO0960 at 996.080 kb on - strand, within SO0960 at 996.100 kb on + strand, within SO0960 at 996.116 kb on + strand, within SO0960 at 996.116 kb on + strand, within SO0960 at 996.154 kb on - strand, within SO0960 at 996.156 kb on + strand, within SO0960 at 996.159 kb on + strand, within SO0960 at 996.164 kb on - strand, within SO0960 at 996.164 kb on - strand, within SO0960 at 996.164 kb on - strand, within SO0960 at 996.227 kb on - strand, within SO0960 at 996.245 kb on + strand at 996.267 kb on + strand at 996.275 kb on - strand at 996.362 kb on - strand at 996.464 kb on + strand at 996.471 kb on - strand at 996.472 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 992,999 + -1.1 993,050 + +0.3 993,050 + -0.2 993,058 - -0.8 993,062 + +0.2 993,087 + -1.3 993,134 - ahpC SO0958 0.18 -0.5 993,136 + ahpC SO0958 0.18 -0.5 993,171 + ahpC SO0958 0.24 +0.9 993,230 - ahpC SO0958 0.35 -1.1 993,242 + ahpC SO0958 0.37 +0.2 993,242 + ahpC SO0958 0.37 +1.2 993,250 - ahpC SO0958 0.38 -1.3 993,250 - ahpC SO0958 0.38 -0.6 993,257 - ahpC SO0958 0.39 -0.9 993,356 - ahpC SO0958 0.57 -0.2 993,395 + ahpC SO0958 0.64 -0.5 993,441 + ahpC SO0958 0.72 -0.3 993,549 - +0.4 993,590 - -1.0 993,682 - +0.2 993,684 - -0.5 993,784 + -0.6 993,921 - +1.2 993,970 + +3.3 994,068 + -0.8 994,076 - -0.2 994,076 - +0.4 994,130 + pepA-1 SO0959 0.12 -0.1 994,234 + pepA-1 SO0959 0.19 -1.0 994,298 - pepA-1 SO0959 0.23 -0.1 994,391 + pepA-1 SO0959 0.29 +0.3 994,431 - pepA-1 SO0959 0.32 +0.1 994,559 + pepA-1 SO0959 0.40 -0.2 994,567 - pepA-1 SO0959 0.41 -0.0 994,590 + pepA-1 SO0959 0.42 +0.6 994,603 + pepA-1 SO0959 0.43 +1.4 994,649 + pepA-1 SO0959 0.46 -0.9 994,657 - pepA-1 SO0959 0.46 +1.7 994,657 - pepA-1 SO0959 0.46 -0.0 994,703 - pepA-1 SO0959 0.49 -0.0 994,762 + pepA-1 SO0959 0.53 +0.4 994,770 - pepA-1 SO0959 0.54 -0.2 994,809 - pepA-1 SO0959 0.56 -0.9 994,844 + pepA-1 SO0959 0.59 +0.4 994,872 + pepA-1 SO0959 0.60 -0.4 995,019 - pepA-1 SO0959 0.70 -0.2 995,034 - pepA-1 SO0959 0.71 +0.8 995,034 - pepA-1 SO0959 0.71 -0.0 995,044 + pepA-1 SO0959 0.72 -0.0 995,044 + pepA-1 SO0959 0.72 -1.1 995,047 - pepA-1 SO0959 0.72 -0.4 995,052 - pepA-1 SO0959 0.72 -0.1 995,054 + pepA-1 SO0959 0.72 +0.7 995,132 + pepA-1 SO0959 0.77 -0.2 995,224 + pepA-1 SO0959 0.83 -0.4 995,232 - pepA-1 SO0959 0.84 -0.3 995,338 + +0.3 995,338 + -0.0 995,346 + +0.1 995,354 - -0.0 995,356 + +0.7 995,356 + -0.4 995,356 + +0.1 995,356 + -0.4 995,356 + -0.1 995,356 + -1.0 995,364 - +0.5 995,364 - +0.1 995,364 - -0.1 995,424 + -1.1 995,425 + +0.4 995,432 - +0.9 995,435 + +0.1 995,435 + -0.5 995,443 - +0.0 995,443 - +0.3 995,500 - -0.8 995,500 - -0.6 995,504 + -0.2 995,512 - -0.6 995,526 + -0.1 995,526 + -0.3 995,526 + +0.5 995,534 - +0.0 995,534 - -0.9 995,534 - +0.4 995,534 - -0.2 995,549 - -1.1 995,632 + -0.3 995,701 + SO0960 0.18 +0.4 995,709 - SO0960 0.19 -0.1 995,859 + SO0960 0.39 -0.8 995,875 - SO0960 0.41 -0.8 995,875 - SO0960 0.41 +0.1 995,887 + SO0960 0.43 -0.6 995,999 + SO0960 0.58 -0.1 996,072 + SO0960 0.68 -0.8 996,072 + SO0960 0.68 -1.1 996,080 - SO0960 0.69 +0.7 996,100 + SO0960 0.71 +0.2 996,116 + SO0960 0.74 +0.2 996,116 + SO0960 0.74 -0.9 996,154 - SO0960 0.79 -0.6 996,156 + SO0960 0.79 +3.2 996,159 + SO0960 0.79 +0.1 996,164 - SO0960 0.80 +0.0 996,164 - SO0960 0.80 +0.6 996,164 - SO0960 0.80 +1.8 996,227 - SO0960 0.88 +0.1 996,245 + -0.6 996,267 + +0.5 996,275 - +0.0 996,362 - -0.3 996,464 + -1.3 996,471 - -0.3 996,472 - -0.9
Or see this region's nucleotide sequence