Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0888 and SO0889 are separated by 100 nucleotides SO0889 and SO0890 are separated by 121 nucleotides SO0890 and SO0891 are separated by 154 nucleotides SO0891 and SO0892 are separated by 59 nucleotides
SO0888: SO0888 - amidase family protein (NCBI ptt file), at 917,169 to 918,875
SO0888
SO0889: SO0889 - hypothetical protein (NCBI ptt file), at 918,976 to 919,188
SO0889
SO0890: SO0890 - hypothetical protein (NCBI ptt file), at 919,310 to 920,074
SO0890
SO0891: SO0891 - ISSod1, transposase OrfA (NCBI ptt file), at 920,229 to 920,519
SO0891
SO0892: SO0892 - ISSod1, transposase OrfB (NCBI ptt file), at 920,579 to 921,388
SO0892
Position (kb) 919
920
921 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 918.353 kb on - strand, within SO0888 at 918.385 kb on + strand, within SO0888 at 918.392 kb on + strand, within SO0888 at 918.514 kb on + strand, within SO0888 at 918.522 kb on - strand, within SO0888 at 918.522 kb on - strand, within SO0888 at 918.559 kb on + strand, within SO0888 at 918.559 kb on + strand, within SO0888 at 918.559 kb on + strand, within SO0888 at 918.567 kb on - strand, within SO0888 at 918.567 kb on - strand, within SO0888 at 918.573 kb on + strand, within SO0888 at 918.589 kb on - strand, within SO0888 at 918.589 kb on - strand, within SO0888 at 918.597 kb on + strand, within SO0888 at 918.599 kb on - strand, within SO0888 at 918.650 kb on + strand, within SO0888 at 918.650 kb on + strand, within SO0888 at 918.650 kb on + strand, within SO0888 at 918.658 kb on - strand, within SO0888 at 918.719 kb on + strand at 918.721 kb on - strand at 918.764 kb on - strand at 918.771 kb on + strand at 918.787 kb on + strand at 918.805 kb on - strand at 918.821 kb on + strand at 918.856 kb on + strand at 918.856 kb on + strand at 918.856 kb on + strand at 918.856 kb on + strand at 918.864 kb on - strand at 918.876 kb on + strand at 918.902 kb on + strand at 918.909 kb on - strand at 918.931 kb on + strand at 918.931 kb on + strand at 918.954 kb on + strand at 918.955 kb on + strand at 918.955 kb on + strand at 918.955 kb on + strand at 918.955 kb on + strand at 918.955 kb on + strand at 918.955 kb on + strand at 918.955 kb on + strand at 918.963 kb on - strand at 918.963 kb on - strand at 918.963 kb on - strand at 918.963 kb on - strand at 918.963 kb on - strand at 919.065 kb on + strand, within SO0889 at 919.065 kb on + strand, within SO0889 at 919.065 kb on + strand, within SO0889 at 919.065 kb on + strand, within SO0889 at 919.065 kb on + strand, within SO0889 at 919.065 kb on + strand, within SO0889 at 919.065 kb on + strand, within SO0889 at 919.067 kb on - strand, within SO0889 at 919.073 kb on - strand, within SO0889 at 919.073 kb on - strand, within SO0889 at 919.073 kb on - strand, within SO0889 at 919.073 kb on - strand, within SO0889 at 919.073 kb on - strand, within SO0889 at 919.075 kb on + strand, within SO0889 at 919.075 kb on + strand, within SO0889 at 919.075 kb on + strand, within SO0889 at 919.075 kb on + strand, within SO0889 at 919.075 kb on + strand, within SO0889 at 919.075 kb on + strand, within SO0889 at 919.075 kb on + strand, within SO0889 at 919.075 kb on + strand, within SO0889 at 919.075 kb on + strand, within SO0889 at 919.075 kb on - strand, within SO0889 at 919.078 kb on - strand, within SO0889 at 919.083 kb on - strand, within SO0889 at 919.083 kb on - strand, within SO0889 at 919.083 kb on - strand, within SO0889 at 919.083 kb on - strand, within SO0889 at 919.083 kb on - strand, within SO0889 at 919.083 kb on - strand, within SO0889 at 919.083 kb on - strand, within SO0889 at 919.083 kb on - strand, within SO0889 at 919.083 kb on - strand, within SO0889 at 919.083 kb on - strand, within SO0889 at 919.083 kb on - strand, within SO0889 at 919.083 kb on - strand, within SO0889 at 919.083 kb on - strand, within SO0889 at 919.101 kb on + strand, within SO0889 at 919.120 kb on + strand, within SO0889 at 919.163 kb on + strand, within SO0889 at 919.176 kb on + strand at 919.192 kb on + strand at 919.223 kb on + strand at 919.223 kb on + strand at 919.223 kb on + strand at 919.223 kb on + strand at 919.223 kb on + strand at 919.223 kb on + strand at 919.223 kb on + strand at 919.223 kb on + strand at 919.223 kb on + strand at 919.223 kb on + strand at 919.223 kb on + strand at 919.231 kb on - strand at 919.231 kb on - strand at 919.231 kb on - strand at 919.231 kb on - strand at 919.231 kb on - strand at 919.231 kb on - strand at 919.231 kb on - strand at 919.231 kb on - strand at 919.231 kb on - strand at 919.240 kb on - strand at 919.266 kb on - strand at 919.352 kb on - strand at 919.358 kb on + strand at 919.366 kb on - strand at 919.382 kb on + strand at 919.510 kb on - strand, within SO0890 at 919.514 kb on - strand, within SO0890 at 919.515 kb on + strand, within SO0890 at 919.515 kb on + strand, within SO0890 at 919.515 kb on + strand, within SO0890 at 919.516 kb on - strand, within SO0890 at 919.516 kb on - strand, within SO0890 at 919.523 kb on - strand, within SO0890 at 919.523 kb on - strand, within SO0890 at 919.574 kb on + strand, within SO0890 at 919.586 kb on - strand, within SO0890 at 919.593 kb on - strand, within SO0890 at 919.610 kb on + strand, within SO0890 at 919.656 kb on + strand, within SO0890 at 919.666 kb on + strand, within SO0890 at 919.674 kb on - strand, within SO0890 at 919.687 kb on + strand, within SO0890 at 919.687 kb on + strand, within SO0890 at 919.687 kb on + strand, within SO0890 at 919.687 kb on + strand, within SO0890 at 919.695 kb on - strand, within SO0890 at 919.726 kb on + strand, within SO0890 at 919.754 kb on + strand, within SO0890 at 919.754 kb on + strand, within SO0890 at 919.754 kb on + strand, within SO0890 at 919.762 kb on - strand, within SO0890 at 919.762 kb on - strand, within SO0890 at 919.762 kb on - strand, within SO0890 at 919.832 kb on - strand, within SO0890 at 919.854 kb on - strand, within SO0890 at 919.857 kb on + strand, within SO0890 at 919.881 kb on + strand, within SO0890 at 919.892 kb on + strand, within SO0890 at 919.905 kb on + strand, within SO0890 at 919.917 kb on + strand, within SO0890 at 919.924 kb on - strand, within SO0890 at 919.925 kb on - strand, within SO0890 at 919.933 kb on + strand, within SO0890 at 919.951 kb on + strand, within SO0890 at 919.961 kb on + strand, within SO0890 at 919.961 kb on + strand, within SO0890 at 919.961 kb on + strand, within SO0890 at 919.961 kb on + strand, within SO0890 at 919.961 kb on + strand, within SO0890 at 919.969 kb on - strand, within SO0890 at 919.969 kb on - strand, within SO0890 at 919.975 kb on + strand, within SO0890 at 919.975 kb on + strand, within SO0890 at 919.975 kb on + strand, within SO0890 at 919.996 kb on + strand, within SO0890 at 919.999 kb on + strand at 919.999 kb on + strand at 920.014 kb on + strand at 920.017 kb on - strand at 920.024 kb on + strand at 920.034 kb on + strand at 920.042 kb on - strand at 920.125 kb on + strand at 920.176 kb on - strand at 920.176 kb on - strand at 920.176 kb on - strand at 920.176 kb on - strand at 920.176 kb on - strand at 920.176 kb on - strand at 920.176 kb on - strand at 920.176 kb on - strand at 920.176 kb on - strand at 920.176 kb on - strand at 920.176 kb on - strand at 920.176 kb on - strand at 920.176 kb on - strand at 920.176 kb on - strand at 920.176 kb on - strand at 920.176 kb on - strand at 920.176 kb on - strand at 920.177 kb on - strand at 920.177 kb on - strand at 920.177 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 918,353 - SO0888 0.69 +0.0 918,385 + SO0888 0.71 -0.9 918,392 + SO0888 0.72 -2.1 918,514 + SO0888 0.79 -1.0 918,522 - SO0888 0.79 -0.9 918,522 - SO0888 0.79 -1.5 918,559 + SO0888 0.81 -0.7 918,559 + SO0888 0.81 +1.7 918,559 + SO0888 0.81 -0.8 918,567 - SO0888 0.82 -1.3 918,567 - SO0888 0.82 -3.1 918,573 + SO0888 0.82 -0.9 918,589 - SO0888 0.83 -0.4 918,589 - SO0888 0.83 -1.5 918,597 + SO0888 0.84 -0.5 918,599 - SO0888 0.84 +0.7 918,650 + SO0888 0.87 -1.3 918,650 + SO0888 0.87 +0.4 918,650 + SO0888 0.87 -0.4 918,658 - SO0888 0.87 -0.3 918,719 + +0.7 918,721 - -1.0 918,764 - -0.8 918,771 + -0.5 918,787 + -0.5 918,805 - -1.3 918,821 + +0.1 918,856 + +0.7 918,856 + -0.5 918,856 + -1.3 918,856 + +0.1 918,864 - -0.0 918,876 + -0.5 918,902 + +0.4 918,909 - -0.5 918,931 + +0.2 918,931 + -0.6 918,954 + -0.5 918,955 + +0.2 918,955 + -0.7 918,955 + -0.5 918,955 + -0.3 918,955 + +0.7 918,955 + +0.4 918,955 + +0.5 918,963 - -0.1 918,963 - +0.7 918,963 - +0.0 918,963 - +2.2 918,963 - -0.7 919,065 + SO0889 0.42 -0.1 919,065 + SO0889 0.42 +0.3 919,065 + SO0889 0.42 -0.4 919,065 + SO0889 0.42 +0.2 919,065 + SO0889 0.42 -0.1 919,065 + SO0889 0.42 -1.0 919,065 + SO0889 0.42 -0.0 919,067 - SO0889 0.43 +0.2 919,073 - SO0889 0.46 -0.5 919,073 - SO0889 0.46 +0.4 919,073 - SO0889 0.46 +0.9 919,073 - SO0889 0.46 -1.5 919,073 - SO0889 0.46 -0.9 919,075 + SO0889 0.46 -0.3 919,075 + SO0889 0.46 -0.6 919,075 + SO0889 0.46 +0.0 919,075 + SO0889 0.46 +0.4 919,075 + SO0889 0.46 -0.3 919,075 + SO0889 0.46 +0.7 919,075 + SO0889 0.46 -1.0 919,075 + SO0889 0.46 +0.8 919,075 + SO0889 0.46 -0.1 919,075 - SO0889 0.46 -1.7 919,078 - SO0889 0.48 +1.1 919,083 - SO0889 0.50 +1.1 919,083 - SO0889 0.50 +0.4 919,083 - SO0889 0.50 -0.3 919,083 - SO0889 0.50 +0.2 919,083 - SO0889 0.50 -0.1 919,083 - SO0889 0.50 -0.1 919,083 - SO0889 0.50 -0.1 919,083 - SO0889 0.50 +0.2 919,083 - SO0889 0.50 -0.6 919,083 - SO0889 0.50 +0.5 919,083 - SO0889 0.50 +0.6 919,083 - SO0889 0.50 +0.0 919,083 - SO0889 0.50 +0.9 919,101 + SO0889 0.59 -0.0 919,120 + SO0889 0.68 -0.4 919,163 + SO0889 0.88 -0.1 919,176 + +1.9 919,192 + -0.6 919,223 + -0.5 919,223 + -1.5 919,223 + -0.9 919,223 + -0.1 919,223 + -0.3 919,223 + +0.4 919,223 + +0.6 919,223 + +0.4 919,223 + +0.3 919,223 + -0.4 919,223 + -0.2 919,231 - +0.4 919,231 - -0.5 919,231 - +0.2 919,231 - +0.3 919,231 - +1.8 919,231 - -0.2 919,231 - -1.1 919,231 - -0.1 919,231 - -0.0 919,240 - -0.1 919,266 - -0.2 919,352 - +0.4 919,358 + +0.3 919,366 - -0.4 919,382 + -0.1 919,510 - SO0890 0.26 -0.1 919,514 - SO0890 0.27 +0.1 919,515 + SO0890 0.27 -0.5 919,515 + SO0890 0.27 -0.3 919,515 + SO0890 0.27 -0.3 919,516 - SO0890 0.27 -0.1 919,516 - SO0890 0.27 +0.3 919,523 - SO0890 0.28 +0.8 919,523 - SO0890 0.28 -2.0 919,574 + SO0890 0.35 +2.5 919,586 - SO0890 0.36 -0.3 919,593 - SO0890 0.37 -2.4 919,610 + SO0890 0.39 -0.6 919,656 + SO0890 0.45 -0.8 919,666 + SO0890 0.47 -0.1 919,674 - SO0890 0.48 -0.9 919,687 + SO0890 0.49 -0.5 919,687 + SO0890 0.49 +0.0 919,687 + SO0890 0.49 -1.1 919,687 + SO0890 0.49 -1.3 919,695 - SO0890 0.50 -0.8 919,726 + SO0890 0.54 -2.6 919,754 + SO0890 0.58 +0.3 919,754 + SO0890 0.58 -0.6 919,754 + SO0890 0.58 +0.0 919,762 - SO0890 0.59 +2.0 919,762 - SO0890 0.59 -0.4 919,762 - SO0890 0.59 +0.7 919,832 - SO0890 0.68 +0.6 919,854 - SO0890 0.71 +0.6 919,857 + SO0890 0.72 -0.1 919,881 + SO0890 0.75 +0.2 919,892 + SO0890 0.76 -0.2 919,905 + SO0890 0.78 +1.3 919,917 + SO0890 0.79 -0.3 919,924 - SO0890 0.80 -0.1 919,925 - SO0890 0.80 -1.2 919,933 + SO0890 0.81 +0.0 919,951 + SO0890 0.84 +0.1 919,961 + SO0890 0.85 -1.0 919,961 + SO0890 0.85 -0.4 919,961 + SO0890 0.85 -1.2 919,961 + SO0890 0.85 +0.1 919,961 + SO0890 0.85 -0.2 919,969 - SO0890 0.86 +0.6 919,969 - SO0890 0.86 -0.7 919,975 + SO0890 0.87 +0.9 919,975 + SO0890 0.87 +0.6 919,975 + SO0890 0.87 -0.5 919,996 + SO0890 0.90 -0.4 919,999 + +0.2 919,999 + +1.2 920,014 + -0.8 920,017 - +0.6 920,024 + -1.3 920,034 + -0.4 920,042 - -0.0 920,125 + +0.3 920,176 - +0.5 920,176 - -0.3 920,176 - -1.1 920,176 - +0.9 920,176 - -0.0 920,176 - -0.1 920,176 - -0.3 920,176 - -0.4 920,176 - +0.6 920,176 - +1.1 920,176 - +0.6 920,176 - +0.0 920,176 - -0.1 920,176 - +0.0 920,176 - -0.3 920,176 - +0.5 920,176 - -0.2 920,177 - +0.5 920,177 - +0.0 920,177 - -0.8
Or see this region's nucleotide sequence