Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gshB and SO0832 are separated by 93 nucleotides SO0832 and endA are separated by 8 nucleotides endA and SO0834 are separated by 138 nucleotides
SO0831: gshB - glutathione synthetase (NCBI ptt file), at 849,536 to 850,483
gshB
SO0832: SO0832 - conserved hypothetical protein TIGR00046 (NCBI ptt file), at 850,577 to 851,308
SO0832
SO0833: endA - endonuclease I (NCBI ptt file), at 851,317 to 852,093
endA
SO0834: SO0834 - sprT protein, putative (NCBI ptt file), at 852,232 to 852,852
SO0834
Position (kb) 850
851
852 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 849.708 kb on - strand, within gshB at 849.754 kb on - strand, within gshB at 849.811 kb on + strand, within gshB at 849.820 kb on - strand, within gshB at 849.926 kb on + strand, within gshB at 850.333 kb on + strand, within gshB at 850.397 kb on - strand at 850.462 kb on + strand at 850.529 kb on + strand at 850.562 kb on - strand at 850.622 kb on + strand at 850.630 kb on - strand at 850.630 kb on - strand at 850.632 kb on + strand at 850.640 kb on - strand at 850.666 kb on - strand, within SO0832 at 850.763 kb on - strand, within SO0832 at 850.768 kb on + strand, within SO0832 at 850.783 kb on + strand, within SO0832 at 851.007 kb on - strand, within SO0832 at 851.007 kb on - strand, within SO0832 at 851.064 kb on + strand, within SO0832 at 851.162 kb on + strand, within SO0832 at 851.183 kb on - strand, within SO0832 at 851.207 kb on - strand, within SO0832 at 851.218 kb on - strand, within SO0832 at 851.441 kb on + strand, within endA at 851.443 kb on - strand, within endA at 851.651 kb on + strand, within endA at 851.651 kb on + strand, within endA at 851.681 kb on - strand, within endA at 851.763 kb on - strand, within endA at 851.796 kb on - strand, within endA at 851.796 kb on - strand, within endA at 851.937 kb on - strand, within endA at 851.937 kb on - strand, within endA at 851.946 kb on + strand, within endA at 851.973 kb on - strand, within endA at 851.974 kb on - strand, within endA at 851.984 kb on - strand, within endA at 852.046 kb on + strand at 852.063 kb on + strand at 852.072 kb on - strand at 852.220 kb on + strand at 852.228 kb on - strand at 852.230 kb on + strand at 852.249 kb on + strand at 852.286 kb on + strand at 852.294 kb on - strand, within SO0834
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 849,708 - gshB SO0831 0.18 -3.0 849,754 - gshB SO0831 0.23 -3.0 849,811 + gshB SO0831 0.29 -2.2 849,820 - gshB SO0831 0.30 -3.6 849,926 + gshB SO0831 0.41 -2.9 850,333 + gshB SO0831 0.84 -3.3 850,397 - -3.6 850,462 + -2.1 850,529 + -2.2 850,562 - +0.7 850,622 + -0.9 850,630 - -0.9 850,630 - -0.1 850,632 + -0.7 850,640 - -0.2 850,666 - SO0832 0.12 -0.2 850,763 - SO0832 0.25 -0.9 850,768 + SO0832 0.26 -1.9 850,783 + SO0832 0.28 -1.9 851,007 - SO0832 0.59 -0.7 851,007 - SO0832 0.59 -0.4 851,064 + SO0832 0.67 -2.1 851,162 + SO0832 0.80 -1.2 851,183 - SO0832 0.83 +0.2 851,207 - SO0832 0.86 +0.1 851,218 - SO0832 0.88 +0.1 851,441 + endA SO0833 0.16 -1.5 851,443 - endA SO0833 0.16 -0.1 851,651 + endA SO0833 0.43 +0.7 851,651 + endA SO0833 0.43 +0.3 851,681 - endA SO0833 0.47 -1.3 851,763 - endA SO0833 0.57 -0.5 851,796 - endA SO0833 0.62 -1.6 851,796 - endA SO0833 0.62 +0.4 851,937 - endA SO0833 0.80 +0.1 851,937 - endA SO0833 0.80 -0.4 851,946 + endA SO0833 0.81 -2.1 851,973 - endA SO0833 0.84 +0.2 851,974 - endA SO0833 0.85 +0.7 851,984 - endA SO0833 0.86 -1.0 852,046 + +0.8 852,063 + -0.3 852,072 - +0.3 852,220 + -0.4 852,228 - +0.3 852,230 + +0.2 852,249 + +0.2 852,286 + +0.1 852,294 - SO0834 0.10 -0.3
Or see this region's nucleotide sequence