Strain Fitness in Shewanella oneidensis MR-1 around SO0606

Experiment: 2-Furfuraldehyde 0.0625 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthflK and hflC are separated by 3 nucleotideshflC and petA are separated by 360 nucleotidespetA and petB overlap by 1 nucleotides SO0605: hflK - hflK protein (NCBI ptt file), at 631,396 to 632,541 hflK SO0606: hflC - hflC protein (NCBI ptt file), at 632,545 to 633,438 hflC SO0608: petA - ubiquinol-cytochrome c reductase, iron-sulfur subunit (NCBI ptt file), at 633,799 to 634,389 petA SO0609: petB - ubiquinol-cytochrome c reductase, cytochrome b (NCBI ptt file), at 634,389 to 635,603 petB Position (kb) 632 633 634Strain fitness (log2 ratio) -1 0 1at 631.550 kb on + strand, within hflKat 631.550 kb on + strand, within hflKat 632.028 kb on + strand, within hflKat 632.119 kb on + strand, within hflKat 632.247 kb on + strand, within hflKat 632.254 kb on + strand, within hflKat 632.259 kb on + strand, within hflKat 632.316 kb on + strand, within hflKat 632.406 kb on + strand, within hflKat 632.430 kb on + strandat 632.430 kb on + strandat 632.430 kb on + strandat 632.590 kb on + strandat 632.744 kb on - strand, within hflCat 632.765 kb on + strand, within hflCat 632.903 kb on + strand, within hflCat 633.052 kb on + strand, within hflCat 633.231 kb on + strand, within hflCat 633.332 kb on + strand, within hflCat 633.845 kb on - strandat 634.379 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol%
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631,550 + hflK SO0605 0.13 +1.3
631,550 + hflK SO0605 0.13 -0.6
632,028 + hflK SO0605 0.55 -0.9
632,119 + hflK SO0605 0.63 -1.5
632,247 + hflK SO0605 0.74 +1.2
632,254 + hflK SO0605 0.75 +0.9
632,259 + hflK SO0605 0.75 -0.1
632,316 + hflK SO0605 0.80 +1.1
632,406 + hflK SO0605 0.88 -0.2
632,430 + +0.1
632,430 + -0.4
632,430 + +0.1
632,590 + +0.1
632,744 - hflC SO0606 0.22 +0.0
632,765 + hflC SO0606 0.25 -0.6
632,903 + hflC SO0606 0.40 -0.6
633,052 + hflC SO0606 0.57 -1.2
633,231 + hflC SO0606 0.77 -1.4
633,332 + hflC SO0606 0.88 -0.1
633,845 - -0.8
634,379 - -0.8

Or see this region's nucleotide sequence