Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0551 and SO0552 are separated by 6 nucleotides SO0552 and SO0553 are separated by 151 nucleotides SO0553 and SO0554 are separated by 220 nucleotides SO0554 and SO0555 are separated by 8 nucleotides
SO0551: SO0551 - conserved hypothetical protein (NCBI ptt file), at 572,668 to 573,177
SO0551
SO0552: SO0552 - hypothetical protein (NCBI ptt file), at 573,184 to 573,498
SO0552
SO0553: SO0553 - hypothetical protein (NCBI ptt file), at 573,650 to 574,006
SO0553
SO0554: SO0554 - hypothetical protein (NCBI ptt file), at 574,227 to 574,751
SO0554
SO0555: SO0555 - conserved hypothetical protein (NCBI ptt file), at 574,760 to 576,514
SO0555
Position (kb) 573
574
575 Strain fitness (log2 ratio) -2
-1
0
1 at 572.727 kb on + strand, within SO0551 at 572.735 kb on - strand, within SO0551 at 572.777 kb on + strand, within SO0551 at 572.844 kb on - strand, within SO0551 at 572.856 kb on - strand, within SO0551 at 572.934 kb on - strand, within SO0551 at 573.326 kb on - strand, within SO0552 at 573.378 kb on + strand, within SO0552 at 573.386 kb on - strand, within SO0552 at 573.386 kb on - strand, within SO0552 at 573.400 kb on - strand, within SO0552 at 573.412 kb on + strand, within SO0552 at 573.422 kb on + strand, within SO0552 at 573.472 kb on + strand at 573.480 kb on - strand at 573.480 kb on - strand at 573.480 kb on - strand at 573.485 kb on + strand at 573.555 kb on + strand at 573.555 kb on + strand at 573.688 kb on + strand, within SO0553 at 573.738 kb on - strand, within SO0553 at 573.774 kb on - strand, within SO0553 at 573.774 kb on - strand, within SO0553 at 573.774 kb on - strand, within SO0553 at 573.778 kb on + strand, within SO0553 at 573.784 kb on - strand, within SO0553 at 573.877 kb on + strand, within SO0553 at 573.885 kb on - strand, within SO0553 at 573.979 kb on + strand at 573.991 kb on + strand at 573.991 kb on + strand at 574.142 kb on + strand at 574.150 kb on - strand at 574.199 kb on - strand at 574.199 kb on - strand at 574.257 kb on + strand at 574.257 kb on + strand at 574.265 kb on - strand at 574.265 kb on - strand at 574.267 kb on + strand at 574.267 kb on + strand at 574.270 kb on + strand at 574.270 kb on + strand at 574.270 kb on + strand at 574.275 kb on - strand at 574.278 kb on - strand at 574.282 kb on - strand, within SO0554 at 574.333 kb on - strand, within SO0554 at 574.364 kb on + strand, within SO0554 at 574.499 kb on - strand, within SO0554 at 574.757 kb on + strand at 574.774 kb on - strand at 574.870 kb on + strand at 574.880 kb on + strand at 574.881 kb on - strand at 574.891 kb on + strand at 574.891 kb on + strand at 574.891 kb on + strand at 574.895 kb on - strand at 574.899 kb on - strand at 574.899 kb on - strand at 574.912 kb on + strand at 574.912 kb on + strand at 574.920 kb on - strand at 574.940 kb on + strand, within SO0555 at 574.978 kb on - strand, within SO0555 at 574.980 kb on + strand, within SO0555 at 574.987 kb on + strand, within SO0555 at 574.995 kb on + strand, within SO0555
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 572,727 + SO0551 0.12 -0.8 572,735 - SO0551 0.13 -1.5 572,777 + SO0551 0.21 -1.2 572,844 - SO0551 0.35 -0.1 572,856 - SO0551 0.37 -0.6 572,934 - SO0551 0.52 +0.2 573,326 - SO0552 0.45 +0.3 573,378 + SO0552 0.62 +0.5 573,386 - SO0552 0.64 +0.1 573,386 - SO0552 0.64 +0.8 573,400 - SO0552 0.69 +0.7 573,412 + SO0552 0.72 -0.4 573,422 + SO0552 0.76 -0.7 573,472 + +0.8 573,480 - +0.8 573,480 - -0.1 573,480 - +0.4 573,485 + -0.2 573,555 + -0.1 573,555 + +0.1 573,688 + SO0553 0.11 -0.1 573,738 - SO0553 0.25 +0.3 573,774 - SO0553 0.35 -2.1 573,774 - SO0553 0.35 -0.9 573,774 - SO0553 0.35 -1.2 573,778 + SO0553 0.36 -0.7 573,784 - SO0553 0.38 -0.5 573,877 + SO0553 0.64 -0.9 573,885 - SO0553 0.66 -0.4 573,979 + -0.3 573,991 + -0.5 573,991 + -0.1 574,142 + -0.4 574,150 - +0.2 574,199 - -0.2 574,199 - +0.7 574,257 + -0.1 574,257 + -0.0 574,265 - +1.0 574,265 - -0.8 574,267 + -0.9 574,267 + -1.8 574,270 + -0.9 574,270 + +0.5 574,270 + -0.8 574,275 - -0.5 574,278 - -0.0 574,282 - SO0554 0.10 +0.3 574,333 - SO0554 0.20 -1.1 574,364 + SO0554 0.26 -0.1 574,499 - SO0554 0.52 -0.3 574,757 + +0.4 574,774 - +0.1 574,870 + +0.3 574,880 + +0.4 574,881 - +0.2 574,891 + +0.5 574,891 + +0.6 574,891 + +0.5 574,895 - +1.0 574,899 - -0.2 574,899 - -0.2 574,912 + -0.6 574,912 + -0.4 574,920 - -2.4 574,940 + SO0555 0.10 +0.3 574,978 - SO0555 0.12 +0.4 574,980 + SO0555 0.13 -0.5 574,987 + SO0555 0.13 +0.3 574,995 + SO0555 0.13 +0.5
Or see this region's nucleotide sequence