Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dsbA and SO0334 are separated by 448 nucleotides SO0334 and SO0335 overlap by 4 nucleotides SO0335 and SO0336 are separated by 179 nucleotides
SO0333: dsbA - thiol:disulfide interchange protein DsbA (NCBI ptt file), at 335,685 to 336,293
dsbA
SO0334: SO0334 - conserved hypothetical protein (NCBI ptt file), at 336,742 to 336,954
SO0334
SO0335: SO0335 - conserved hypothetical protein (NCBI ptt file), at 336,951 to 337,172
SO0335
SO0336: SO0336 - hypothetical Na+/H+ antiporter (NCBI ptt file), at 337,352 to 338,875
SO0336
Position (kb) 336
337
338 Strain fitness (log2 ratio) -1
0
1
2 at 335.979 kb on + strand, within dsbA at 336.083 kb on + strand, within dsbA at 336.091 kb on + strand, within dsbA at 336.107 kb on - strand, within dsbA at 336.189 kb on + strand, within dsbA at 336.245 kb on + strand at 336.248 kb on - strand at 336.270 kb on + strand at 336.278 kb on - strand at 336.483 kb on + strand at 336.488 kb on + strand at 336.496 kb on - strand at 336.509 kb on - strand at 336.516 kb on - strand at 336.516 kb on - strand at 336.716 kb on - strand at 336.772 kb on - strand, within SO0334 at 336.772 kb on - strand, within SO0334 at 336.772 kb on - strand, within SO0334 at 336.813 kb on - strand, within SO0334 at 336.894 kb on + strand, within SO0334 at 336.907 kb on - strand, within SO0334 at 336.939 kb on + strand at 336.939 kb on + strand at 336.980 kb on - strand, within SO0335 at 337.068 kb on - strand, within SO0335 at 337.170 kb on + strand at 337.170 kb on + strand at 337.170 kb on + strand at 337.170 kb on + strand at 337.170 kb on + strand at 337.170 kb on + strand at 337.170 kb on + strand at 337.170 kb on + strand at 337.178 kb on - strand at 337.178 kb on - strand at 337.178 kb on - strand at 337.178 kb on - strand at 337.178 kb on - strand at 337.180 kb on + strand at 337.180 kb on + strand at 337.180 kb on + strand at 337.180 kb on + strand at 337.180 kb on + strand at 337.180 kb on + strand at 337.188 kb on - strand at 337.188 kb on - strand at 337.188 kb on - strand at 337.188 kb on - strand at 337.188 kb on - strand at 337.188 kb on - strand at 337.188 kb on - strand at 337.188 kb on - strand at 337.240 kb on - strand at 337.354 kb on - strand at 337.397 kb on + strand at 337.512 kb on - strand, within SO0336 at 337.610 kb on + strand, within SO0336 at 337.739 kb on + strand, within SO0336 at 337.769 kb on - strand, within SO0336 at 337.780 kb on - strand, within SO0336 at 337.793 kb on + strand, within SO0336 at 337.836 kb on - strand, within SO0336 at 337.837 kb on + strand, within SO0336 at 337.862 kb on - strand, within SO0336 at 337.862 kb on - strand, within SO0336 at 337.989 kb on + strand, within SO0336 at 337.997 kb on - strand, within SO0336 at 338.001 kb on + strand, within SO0336 at 338.032 kb on - strand, within SO0336 at 338.082 kb on - strand, within SO0336 at 338.092 kb on + strand, within SO0336 at 338.128 kb on + strand, within SO0336 at 338.138 kb on - strand, within SO0336 at 338.142 kb on + strand, within SO0336 at 338.147 kb on + strand, within SO0336 at 338.155 kb on - strand, within SO0336
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 335,979 + dsbA SO0333 0.48 +0.3 336,083 + dsbA SO0333 0.65 -0.2 336,091 + dsbA SO0333 0.67 -0.3 336,107 - dsbA SO0333 0.69 +0.3 336,189 + dsbA SO0333 0.83 -0.6 336,245 + +0.9 336,248 - +1.2 336,270 + -1.0 336,278 - -0.1 336,483 + +1.1 336,488 + -1.2 336,496 - -1.2 336,509 - -0.1 336,516 - -0.5 336,516 - -0.3 336,716 - +0.0 336,772 - SO0334 0.14 +0.3 336,772 - SO0334 0.14 -0.2 336,772 - SO0334 0.14 -0.3 336,813 - SO0334 0.33 +0.2 336,894 + SO0334 0.71 +0.0 336,907 - SO0334 0.77 +0.5 336,939 + +0.7 336,939 + +0.9 336,980 - SO0335 0.13 +0.4 337,068 - SO0335 0.53 -0.3 337,170 + +0.2 337,170 + -0.5 337,170 + +0.9 337,170 + +0.2 337,170 + +0.2 337,170 + +0.7 337,170 + +0.9 337,170 + +0.2 337,178 - +0.7 337,178 - +0.5 337,178 - +2.3 337,178 - +0.2 337,178 - +0.3 337,180 + -0.2 337,180 + +0.2 337,180 + +0.5 337,180 + +0.5 337,180 + -0.7 337,180 + +1.0 337,188 - +0.7 337,188 - +0.3 337,188 - +0.2 337,188 - -0.2 337,188 - +0.1 337,188 - -0.4 337,188 - +0.6 337,188 - +0.7 337,240 - +0.1 337,354 - +0.3 337,397 + -0.5 337,512 - SO0336 0.10 +0.5 337,610 + SO0336 0.17 +0.6 337,739 + SO0336 0.25 +0.2 337,769 - SO0336 0.27 +0.2 337,780 - SO0336 0.28 +1.7 337,793 + SO0336 0.29 +0.1 337,836 - SO0336 0.32 -0.2 337,837 + SO0336 0.32 +0.9 337,862 - SO0336 0.33 -0.4 337,862 - SO0336 0.33 -0.2 337,989 + SO0336 0.42 +0.2 337,997 - SO0336 0.42 -1.1 338,001 + SO0336 0.43 -0.3 338,032 - SO0336 0.45 +0.0 338,082 - SO0336 0.48 +0.3 338,092 + SO0336 0.49 +0.1 338,128 + SO0336 0.51 +0.5 338,138 - SO0336 0.52 +0.7 338,142 + SO0336 0.52 +0.4 338,147 + SO0336 0.52 -0.8 338,155 - SO0336 0.53 +0.2
Or see this region's nucleotide sequence