Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0306 and SO0308 are separated by 300 nucleotides SO0308 and SO0309 are separated by 155 nucleotides SO0309 and SO0311 are separated by 213 nucleotides
SO0306: SO0306 - hypothetical protein (NCBI ptt file), at 311,176 to 312,687
SO0306
SO0308: SO0308 - conserved hypothetical protein (NCBI ptt file), at 312,988 to 314,208
SO0308
SO0309: SO0309 - conserved hypothetical protein (NCBI ptt file), at 314,364 to 314,762
SO0309
SO0311: SO0311 - hypothetical Fe-S oxidoreductase (NCBI ptt file), at 314,976 to 317,336
SO0311
Position (kb) 312
313
314
315 Strain fitness (log2 ratio) -2
-1
0
1
2 at 311.989 kb on + strand, within SO0306 at 312.033 kb on + strand, within SO0306 at 312.041 kb on - strand, within SO0306 at 312.041 kb on - strand, within SO0306 at 312.041 kb on - strand, within SO0306 at 312.090 kb on + strand, within SO0306 at 312.100 kb on - strand, within SO0306 at 312.125 kb on + strand, within SO0306 at 312.304 kb on + strand, within SO0306 at 312.339 kb on - strand, within SO0306 at 312.365 kb on + strand, within SO0306 at 312.437 kb on + strand, within SO0306 at 312.445 kb on - strand, within SO0306 at 312.445 kb on - strand, within SO0306 at 312.457 kb on - strand, within SO0306 at 312.512 kb on - strand, within SO0306 at 312.514 kb on + strand, within SO0306 at 312.540 kb on + strand at 312.626 kb on - strand at 312.751 kb on + strand at 312.798 kb on - strand at 312.845 kb on + strand at 312.845 kb on + strand at 312.845 kb on + strand at 312.845 kb on + strand at 312.845 kb on + strand at 312.853 kb on - strand at 312.853 kb on - strand at 312.853 kb on - strand at 312.853 kb on - strand at 312.853 kb on - strand at 312.972 kb on + strand at 312.980 kb on - strand at 312.980 kb on - strand at 313.001 kb on - strand at 313.027 kb on + strand at 313.074 kb on + strand at 313.086 kb on + strand at 313.162 kb on + strand, within SO0308 at 313.279 kb on + strand, within SO0308 at 313.302 kb on + strand, within SO0308 at 313.322 kb on + strand, within SO0308 at 313.334 kb on + strand, within SO0308 at 313.360 kb on + strand, within SO0308 at 313.360 kb on + strand, within SO0308 at 313.368 kb on - strand, within SO0308 at 313.457 kb on + strand, within SO0308 at 313.468 kb on + strand, within SO0308 at 313.468 kb on + strand, within SO0308 at 313.476 kb on - strand, within SO0308 at 313.476 kb on - strand, within SO0308 at 313.522 kb on - strand, within SO0308 at 313.567 kb on + strand, within SO0308 at 313.573 kb on + strand, within SO0308 at 313.603 kb on - strand, within SO0308 at 313.671 kb on - strand, within SO0308 at 313.704 kb on - strand, within SO0308 at 313.710 kb on - strand, within SO0308 at 313.767 kb on + strand, within SO0308 at 313.786 kb on + strand at 313.792 kb on - strand, within SO0308 at 313.796 kb on + strand, within SO0308 at 313.897 kb on + strand, within SO0308 at 313.897 kb on + strand, within SO0308 at 313.897 kb on + strand, within SO0308 at 313.904 kb on + strand, within SO0308 at 313.905 kb on - strand, within SO0308 at 313.918 kb on + strand, within SO0308 at 313.996 kb on - strand, within SO0308 at 314.052 kb on + strand, within SO0308 at 314.090 kb on + strand at 314.488 kb on + strand, within SO0309 at 314.644 kb on + strand, within SO0309 at 314.691 kb on + strand, within SO0309 at 314.699 kb on - strand, within SO0309 at 314.742 kb on - strand at 314.742 kb on - strand at 314.763 kb on + strand at 314.777 kb on - strand at 314.777 kb on - strand at 314.815 kb on - strand at 314.892 kb on + strand at 314.902 kb on - strand at 314.902 kb on - strand at 315.011 kb on + strand at 315.026 kb on + strand at 315.097 kb on + strand at 315.119 kb on - strand at 315.170 kb on + strand at 315.179 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 311,989 + SO0306 0.54 +0.5 312,033 + SO0306 0.57 -0.1 312,041 - SO0306 0.57 +0.9 312,041 - SO0306 0.57 -0.7 312,041 - SO0306 0.57 +0.4 312,090 + SO0306 0.60 -0.5 312,100 - SO0306 0.61 +0.9 312,125 + SO0306 0.63 +0.2 312,304 + SO0306 0.75 +0.1 312,339 - SO0306 0.77 +0.5 312,365 + SO0306 0.79 -0.0 312,437 + SO0306 0.83 -0.2 312,445 - SO0306 0.84 +0.6 312,445 - SO0306 0.84 +0.0 312,457 - SO0306 0.85 -0.1 312,512 - SO0306 0.88 -1.1 312,514 + SO0306 0.88 +0.6 312,540 + +1.5 312,626 - -0.7 312,751 + +0.1 312,798 - -0.1 312,845 + +0.9 312,845 + -0.3 312,845 + -0.0 312,845 + -0.4 312,845 + +0.1 312,853 - -0.6 312,853 - -0.2 312,853 - -2.5 312,853 - +0.2 312,853 - +0.1 312,972 + +0.7 312,980 - -0.1 312,980 - +0.5 313,001 - -0.1 313,027 + +0.4 313,074 + +0.2 313,086 + +0.2 313,162 + SO0308 0.14 -0.2 313,279 + SO0308 0.24 +0.5 313,302 + SO0308 0.26 +0.0 313,322 + SO0308 0.27 -0.3 313,334 + SO0308 0.28 +0.2 313,360 + SO0308 0.30 +1.2 313,360 + SO0308 0.30 +1.7 313,368 - SO0308 0.31 +1.5 313,457 + SO0308 0.38 +1.3 313,468 + SO0308 0.39 +1.7 313,468 + SO0308 0.39 -0.1 313,476 - SO0308 0.40 +0.9 313,476 - SO0308 0.40 +0.9 313,522 - SO0308 0.44 -0.3 313,567 + SO0308 0.47 +0.9 313,573 + SO0308 0.48 -0.4 313,603 - SO0308 0.50 +0.0 313,671 - SO0308 0.56 +0.3 313,704 - SO0308 0.59 +0.3 313,710 - SO0308 0.59 +0.9 313,767 + SO0308 0.64 -0.4 313,786 + -0.1 313,792 - SO0308 0.66 -1.1 313,796 + SO0308 0.66 -0.3 313,897 + SO0308 0.74 +1.3 313,897 + SO0308 0.74 -0.3 313,897 + SO0308 0.74 +0.9 313,904 + SO0308 0.75 -0.0 313,905 - SO0308 0.75 +0.1 313,918 + SO0308 0.76 +2.3 313,996 - SO0308 0.83 +0.9 314,052 + SO0308 0.87 +0.9 314,090 + +0.1 314,488 + SO0309 0.31 +0.0 314,644 + SO0309 0.70 -1.1 314,691 + SO0309 0.82 -0.2 314,699 - SO0309 0.84 +0.2 314,742 - +0.6 314,742 - -0.3 314,763 + -0.5 314,777 - +0.1 314,777 - +0.2 314,815 - +0.1 314,892 + +0.1 314,902 - +0.5 314,902 - -0.1 315,011 + +0.5 315,026 + +0.5 315,097 + +1.9 315,119 - +0.1 315,170 + +1.4 315,179 - +0.5
Or see this region's nucleotide sequence