Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0265 and ccmF-1 are separated by 398 nucleotides ccmF-1 and dsbE are separated by 11 nucleotides dsbE and ccmH overlap by 4 nucleotides
SO0265: SO0265 - conserved hypothetical protein (NCBI ptt file), at 264,025 to 265,272
SO0265
SO0266: ccmF-1 - cytochrome c-type biogenesis protein CcmF (NCBI ptt file), at 265,671 to 267,650
ccmF-1
SO0267: dsbE - thiol:disulfide interchange protein DsbE (NCBI ptt file), at 267,662 to 268,216
dsbE
SO0268: ccmH - cytochrome c-type biogenesis protein CcmH (NCBI ptt file), at 268,213 to 268,692
ccmH
Position (kb) 265
266
267
268 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 264.674 kb on - strand, within SO0265 at 264.676 kb on + strand, within SO0265 at 264.676 kb on + strand, within SO0265 at 264.684 kb on - strand, within SO0265 at 264.774 kb on - strand, within SO0265 at 264.864 kb on - strand, within SO0265 at 264.977 kb on - strand, within SO0265 at 264.994 kb on - strand, within SO0265 at 265.038 kb on - strand, within SO0265 at 265.095 kb on - strand, within SO0265 at 265.211 kb on + strand at 265.221 kb on + strand at 265.221 kb on + strand at 265.221 kb on + strand at 265.221 kb on + strand at 265.221 kb on + strand at 265.229 kb on - strand at 265.229 kb on - strand at 265.229 kb on - strand at 265.229 kb on - strand at 265.358 kb on - strand at 265.721 kb on - strand at 265.772 kb on - strand at 265.799 kb on - strand at 265.942 kb on + strand, within ccmF-1 at 265.956 kb on + strand, within ccmF-1 at 266.081 kb on - strand, within ccmF-1 at 266.098 kb on + strand, within ccmF-1 at 266.098 kb on + strand, within ccmF-1 at 266.098 kb on + strand, within ccmF-1 at 266.098 kb on + strand, within ccmF-1 at 266.106 kb on - strand, within ccmF-1 at 266.106 kb on - strand, within ccmF-1 at 266.195 kb on - strand, within ccmF-1 at 266.255 kb on - strand, within ccmF-1 at 266.295 kb on + strand, within ccmF-1 at 266.303 kb on - strand, within ccmF-1 at 266.447 kb on - strand, within ccmF-1 at 266.559 kb on + strand, within ccmF-1 at 266.561 kb on + strand, within ccmF-1 at 266.569 kb on - strand, within ccmF-1 at 266.589 kb on + strand, within ccmF-1 at 266.683 kb on + strand, within ccmF-1 at 266.691 kb on - strand, within ccmF-1 at 266.691 kb on - strand, within ccmF-1 at 266.691 kb on - strand, within ccmF-1 at 266.766 kb on - strand, within ccmF-1 at 266.837 kb on + strand, within ccmF-1 at 266.900 kb on + strand, within ccmF-1 at 267.064 kb on + strand, within ccmF-1 at 267.100 kb on - strand, within ccmF-1 at 267.128 kb on - strand, within ccmF-1 at 267.258 kb on + strand, within ccmF-1 at 267.266 kb on - strand, within ccmF-1 at 267.310 kb on - strand, within ccmF-1 at 267.310 kb on - strand, within ccmF-1 at 267.310 kb on - strand, within ccmF-1 at 267.362 kb on + strand, within ccmF-1 at 267.573 kb on + strand at 267.959 kb on - strand, within dsbE at 267.959 kb on - strand, within dsbE at 268.050 kb on + strand, within dsbE at 268.058 kb on - strand, within dsbE at 268.122 kb on + strand, within dsbE at 268.158 kb on + strand, within dsbE at 268.159 kb on + strand, within dsbE at 268.206 kb on + strand at 268.246 kb on + strand at 268.278 kb on + strand, within ccmH at 268.285 kb on + strand, within ccmH at 268.286 kb on - strand, within ccmH at 268.400 kb on - strand, within ccmH at 268.426 kb on + strand, within ccmH at 268.428 kb on + strand, within ccmH at 268.436 kb on - strand, within ccmH at 268.436 kb on - strand, within ccmH at 268.436 kb on - strand, within ccmH at 268.446 kb on + strand, within ccmH at 268.446 kb on + strand, within ccmH at 268.446 kb on + strand, within ccmH at 268.446 kb on + strand, within ccmH at 268.446 kb on + strand, within ccmH at 268.446 kb on + strand, within ccmH at 268.446 kb on + strand, within ccmH at 268.454 kb on - strand, within ccmH at 268.454 kb on - strand, within ccmH at 268.560 kb on - strand, within ccmH at 268.582 kb on - strand, within ccmH at 268.608 kb on + strand, within ccmH
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 264,674 - SO0265 0.52 -0.4 264,676 + SO0265 0.52 +0.2 264,676 + SO0265 0.52 +0.3 264,684 - SO0265 0.53 -0.4 264,774 - SO0265 0.60 -1.0 264,864 - SO0265 0.67 +0.7 264,977 - SO0265 0.76 -0.8 264,994 - SO0265 0.78 -0.6 265,038 - SO0265 0.81 -2.0 265,095 - SO0265 0.86 -0.0 265,211 + -2.0 265,221 + -2.6 265,221 + -0.6 265,221 + -1.0 265,221 + -0.4 265,221 + -1.0 265,229 - -1.6 265,229 - -1.4 265,229 - -1.4 265,229 - -1.2 265,358 - +0.6 265,721 - -1.0 265,772 - -0.4 265,799 - -2.0 265,942 + ccmF-1 SO0266 0.14 -0.8 265,956 + ccmF-1 SO0266 0.14 -0.7 266,081 - ccmF-1 SO0266 0.21 -1.1 266,098 + ccmF-1 SO0266 0.22 -2.2 266,098 + ccmF-1 SO0266 0.22 -1.0 266,098 + ccmF-1 SO0266 0.22 -1.7 266,098 + ccmF-1 SO0266 0.22 -3.4 266,106 - ccmF-1 SO0266 0.22 -2.5 266,106 - ccmF-1 SO0266 0.22 -1.2 266,195 - ccmF-1 SO0266 0.26 -3.2 266,255 - ccmF-1 SO0266 0.29 -1.1 266,295 + ccmF-1 SO0266 0.32 -1.6 266,303 - ccmF-1 SO0266 0.32 -1.8 266,447 - ccmF-1 SO0266 0.39 -2.4 266,559 + ccmF-1 SO0266 0.45 -1.7 266,561 + ccmF-1 SO0266 0.45 -0.6 266,569 - ccmF-1 SO0266 0.45 -2.9 266,589 + ccmF-1 SO0266 0.46 -1.6 266,683 + ccmF-1 SO0266 0.51 -3.6 266,691 - ccmF-1 SO0266 0.52 -1.4 266,691 - ccmF-1 SO0266 0.52 -1.4 266,691 - ccmF-1 SO0266 0.52 -0.6 266,766 - ccmF-1 SO0266 0.55 -1.6 266,837 + ccmF-1 SO0266 0.59 -0.0 266,900 + ccmF-1 SO0266 0.62 -2.9 267,064 + ccmF-1 SO0266 0.70 -1.0 267,100 - ccmF-1 SO0266 0.72 -0.8 267,128 - ccmF-1 SO0266 0.74 -1.0 267,258 + ccmF-1 SO0266 0.80 -2.2 267,266 - ccmF-1 SO0266 0.81 -2.4 267,310 - ccmF-1 SO0266 0.83 -1.4 267,310 - ccmF-1 SO0266 0.83 -3.4 267,310 - ccmF-1 SO0266 0.83 -1.5 267,362 + ccmF-1 SO0266 0.85 -1.6 267,573 + -0.1 267,959 - dsbE SO0267 0.54 -1.6 267,959 - dsbE SO0267 0.54 -1.0 268,050 + dsbE SO0267 0.70 -3.0 268,058 - dsbE SO0267 0.71 -1.2 268,122 + dsbE SO0267 0.83 +0.5 268,158 + dsbE SO0267 0.89 -1.0 268,159 + dsbE SO0267 0.90 -1.2 268,206 + -0.5 268,246 + -1.4 268,278 + ccmH SO0268 0.14 -1.0 268,285 + ccmH SO0268 0.15 -1.4 268,286 - ccmH SO0268 0.15 -1.0 268,400 - ccmH SO0268 0.39 -0.0 268,426 + ccmH SO0268 0.44 -2.0 268,428 + ccmH SO0268 0.45 -0.9 268,436 - ccmH SO0268 0.46 -1.6 268,436 - ccmH SO0268 0.46 -1.9 268,436 - ccmH SO0268 0.46 -0.9 268,446 + ccmH SO0268 0.49 -3.5 268,446 + ccmH SO0268 0.49 -1.7 268,446 + ccmH SO0268 0.49 -2.7 268,446 + ccmH SO0268 0.49 -2.0 268,446 + ccmH SO0268 0.49 -1.0 268,446 + ccmH SO0268 0.49 -1.6 268,446 + ccmH SO0268 0.49 -0.4 268,454 - ccmH SO0268 0.50 -0.0 268,454 - ccmH SO0268 0.50 -0.6 268,560 - ccmH SO0268 0.72 -2.2 268,582 - ccmH SO0268 0.77 -0.7 268,608 + ccmH SO0268 0.82 -0.8
Or see this region's nucleotide sequence