Experiment: 2-Furfuraldehyde 0.0625 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0081 and SO0082 are separated by 3 nucleotides SO0082 and SO0083 are separated by 187 nucleotides SO0083 and SO0084 are separated by 57 nucleotides
SO0081: SO0081 - conserved hypothetical protein (NCBI ptt file), at 93,827 to 94,156
SO0081
SO0082: SO0082 - transcriptional regulator, MerR family (NCBI ptt file), at 94,160 to 94,516
SO0082
SO0083: SO0083 - carboxymuconolactone decarboxylase family protein (NCBI ptt file), at 94,704 to 95,090
SO0083
SO0084: SO0084 - HAD-superfamily hydrolase, subfamily IA, variant 1 family protein (NCBI ptt file), at 95,148 to 95,828
SO0084
Position (kb) 94
95
96 Strain fitness (log2 ratio) -2
-1
0
1 at 93.706 kb on - strand at 93.706 kb on - strand at 93.718 kb on + strand at 93.718 kb on + strand at 93.726 kb on - strand at 93.726 kb on - strand at 93.726 kb on - strand at 93.777 kb on + strand at 93.838 kb on - strand at 93.838 kb on - strand at 93.895 kb on + strand, within SO0081 at 93.943 kb on + strand, within SO0081 at 94.037 kb on - strand, within SO0081 at 94.089 kb on + strand, within SO0081 at 94.097 kb on - strand, within SO0081 at 94.097 kb on - strand, within SO0081 at 94.097 kb on - strand, within SO0081 at 94.186 kb on + strand at 94.304 kb on - strand, within SO0082 at 94.364 kb on - strand, within SO0082 at 94.377 kb on - strand, within SO0082 at 94.434 kb on - strand, within SO0082 at 94.451 kb on + strand, within SO0082 at 94.597 kb on + strand at 94.605 kb on - strand at 94.654 kb on + strand at 94.663 kb on - strand at 94.669 kb on - strand at 94.669 kb on - strand at 94.670 kb on - strand at 94.722 kb on + strand at 94.740 kb on - strand at 94.811 kb on - strand, within SO0083 at 94.839 kb on - strand, within SO0083 at 94.891 kb on - strand, within SO0083 at 94.934 kb on - strand, within SO0083 at 94.938 kb on + strand, within SO0083 at 95.316 kb on + strand, within SO0084 at 95.471 kb on + strand, within SO0084 at 95.517 kb on + strand, within SO0084 at 95.541 kb on + strand, within SO0084 at 95.549 kb on - strand, within SO0084 at 95.575 kb on + strand, within SO0084 at 95.575 kb on + strand, within SO0084 at 95.583 kb on - strand, within SO0084 at 95.583 kb on - strand, within SO0084 at 95.583 kb on - strand, within SO0084 at 95.583 kb on - strand, within SO0084 at 95.583 kb on - strand, within SO0084 at 95.606 kb on - strand, within SO0084 at 95.637 kb on + strand, within SO0084 at 95.642 kb on + strand, within SO0084 at 95.645 kb on - strand, within SO0084 at 95.782 kb on - strand at 95.802 kb on + strand at 95.802 kb on + strand at 95.810 kb on - strand at 95.832 kb on - strand at 95.870 kb on + strand at 95.914 kb on + strand at 95.926 kb on + strand at 95.934 kb on - strand at 95.935 kb on - strand at 95.942 kb on + strand at 96.051 kb on - strand at 96.066 kb on - strand at 96.085 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.0625 vol% remove 93,706 - -0.4 93,706 - +0.1 93,718 + -0.5 93,718 + +0.3 93,726 - +0.0 93,726 - +0.8 93,726 - +0.3 93,777 + -0.3 93,838 - -0.6 93,838 - -0.1 93,895 + SO0081 0.21 -0.5 93,943 + SO0081 0.35 -1.5 94,037 - SO0081 0.64 -0.5 94,089 + SO0081 0.79 +0.4 94,097 - SO0081 0.82 +1.0 94,097 - SO0081 0.82 -0.6 94,097 - SO0081 0.82 +1.0 94,186 + -1.4 94,304 - SO0082 0.40 +0.5 94,364 - SO0082 0.57 -0.3 94,377 - SO0082 0.61 -0.2 94,434 - SO0082 0.77 +0.4 94,451 + SO0082 0.82 +0.1 94,597 + -0.7 94,605 - -1.0 94,654 + -0.3 94,663 - -0.1 94,669 - -0.0 94,669 - +0.2 94,670 - +0.2 94,722 + -1.7 94,740 - +0.3 94,811 - SO0083 0.28 -0.7 94,839 - SO0083 0.35 +0.2 94,891 - SO0083 0.48 -0.9 94,934 - SO0083 0.59 -0.2 94,938 + SO0083 0.60 -1.1 95,316 + SO0084 0.25 -1.5 95,471 + SO0084 0.47 +1.4 95,517 + SO0084 0.54 +1.0 95,541 + SO0084 0.58 -0.6 95,549 - SO0084 0.59 +0.0 95,575 + SO0084 0.63 -0.1 95,575 + SO0084 0.63 -0.1 95,583 - SO0084 0.64 +0.0 95,583 - SO0084 0.64 -0.7 95,583 - SO0084 0.64 +0.1 95,583 - SO0084 0.64 +0.7 95,583 - SO0084 0.64 +0.2 95,606 - SO0084 0.67 -0.0 95,637 + SO0084 0.72 +0.1 95,642 + SO0084 0.73 -0.7 95,645 - SO0084 0.73 +0.8 95,782 - +0.9 95,802 + -0.3 95,802 + +0.1 95,810 - +0.4 95,832 - -0.4 95,870 + -0.3 95,914 + -2.3 95,926 + +0.5 95,934 - -0.8 95,935 - +1.7 95,942 + -0.1 96,051 - -0.8 96,066 - +0.3 96,085 - -0.6
Or see this region's nucleotide sequence