Experiment: m.b. Cobalt chloride 0.625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09330 and PGA1_c09340 are separated by 202 nucleotides PGA1_c09340 and PGA1_c09350 are separated by 415 nucleotides PGA1_c09350 and PGA1_c09360 are separated by 214 nucleotides PGA1_c09360 and PGA1_c09370 are separated by 214 nucleotides PGA1_c09370 and PGA1_c09380 are separated by 67 nucleotides
PGA1_c09330: PGA1_c09330 - imidazoleglycerol-phosphate dehydratase HisB, at 953,196 to 953,783
_c09330
PGA1_c09340: PGA1_c09340 - putative transcriptional regulator, AsnC family, at 953,986 to 954,225
_c09340
PGA1_c09350: PGA1_c09350 - aminotransferase class-III, at 954,641 to 955,993
_c09350
PGA1_c09360: PGA1_c09360 - tRNA-Gly, at 956,208 to 956,282
_c09360
PGA1_c09370: PGA1_c09370 - tRNA-Gly, at 956,497 to 956,571
_c09370
PGA1_c09380: PGA1_c09380 - putative type 2 restriction enzyme naeI, at 956,639 to 957,550
_c09380
Position (kb) 954
955
956 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 953.820 kb on - strand at 953.837 kb on + strand at 953.973 kb on + strand at 953.979 kb on - strand at 953.979 kb on - strand at 953.981 kb on - strand at 953.981 kb on - strand at 953.994 kb on - strand at 954.030 kb on - strand, within PGA1_c09340 at 954.040 kb on - strand, within PGA1_c09340 at 954.041 kb on + strand, within PGA1_c09340 at 954.050 kb on + strand, within PGA1_c09340 at 954.050 kb on + strand, within PGA1_c09340 at 954.050 kb on + strand, within PGA1_c09340 at 954.058 kb on - strand, within PGA1_c09340 at 954.058 kb on - strand, within PGA1_c09340 at 954.081 kb on + strand, within PGA1_c09340 at 954.087 kb on + strand, within PGA1_c09340 at 954.165 kb on + strand, within PGA1_c09340 at 954.173 kb on - strand, within PGA1_c09340 at 954.190 kb on - strand, within PGA1_c09340 at 954.198 kb on + strand, within PGA1_c09340 at 954.206 kb on - strand at 954.209 kb on + strand at 954.219 kb on + strand at 954.235 kb on - strand at 954.237 kb on - strand at 954.265 kb on + strand at 954.265 kb on + strand at 954.273 kb on - strand at 954.286 kb on - strand at 954.316 kb on - strand at 954.350 kb on - strand at 954.355 kb on + strand at 954.391 kb on + strand at 954.391 kb on + strand at 954.391 kb on + strand at 954.391 kb on + strand at 954.391 kb on + strand at 954.396 kb on + strand at 954.399 kb on - strand at 954.456 kb on - strand at 954.466 kb on - strand at 954.467 kb on - strand at 954.525 kb on + strand at 954.525 kb on + strand at 954.536 kb on - strand at 954.608 kb on + strand at 954.616 kb on + strand at 954.616 kb on + strand at 954.663 kb on + strand at 954.663 kb on + strand at 954.681 kb on - strand at 954.707 kb on + strand at 954.715 kb on - strand at 954.715 kb on - strand at 954.717 kb on + strand at 954.771 kb on - strand at 954.796 kb on - strand, within PGA1_c09350 at 954.981 kb on - strand, within PGA1_c09350 at 954.985 kb on + strand, within PGA1_c09350 at 955.062 kb on + strand, within PGA1_c09350 at 955.161 kb on + strand, within PGA1_c09350 at 955.169 kb on - strand, within PGA1_c09350 at 955.169 kb on - strand, within PGA1_c09350 at 955.169 kb on - strand, within PGA1_c09350 at 955.261 kb on - strand, within PGA1_c09350 at 955.263 kb on + strand, within PGA1_c09350 at 955.263 kb on + strand, within PGA1_c09350 at 955.268 kb on + strand, within PGA1_c09350 at 955.276 kb on - strand, within PGA1_c09350 at 955.390 kb on - strand, within PGA1_c09350 at 955.398 kb on - strand, within PGA1_c09350 at 955.415 kb on + strand, within PGA1_c09350 at 955.457 kb on + strand, within PGA1_c09350 at 955.470 kb on + strand, within PGA1_c09350 at 955.470 kb on + strand, within PGA1_c09350 at 955.470 kb on + strand, within PGA1_c09350 at 955.470 kb on + strand, within PGA1_c09350 at 955.470 kb on + strand, within PGA1_c09350 at 955.470 kb on + strand, within PGA1_c09350 at 955.470 kb on + strand, within PGA1_c09350 at 955.478 kb on - strand, within PGA1_c09350 at 955.478 kb on - strand, within PGA1_c09350 at 955.478 kb on - strand, within PGA1_c09350 at 955.478 kb on - strand, within PGA1_c09350 at 955.502 kb on + strand, within PGA1_c09350 at 955.587 kb on - strand, within PGA1_c09350 at 955.666 kb on - strand, within PGA1_c09350 at 955.703 kb on + strand, within PGA1_c09350 at 955.783 kb on + strand, within PGA1_c09350 at 955.845 kb on + strand, within PGA1_c09350 at 955.860 kb on + strand at 955.863 kb on - strand at 955.873 kb on - strand at 955.890 kb on - strand at 955.905 kb on + strand at 955.923 kb on + strand at 955.933 kb on + strand at 955.933 kb on + strand at 955.933 kb on + strand at 955.938 kb on + strand at 955.938 kb on + strand at 955.938 kb on + strand at 955.938 kb on + strand at 955.938 kb on + strand at 955.938 kb on + strand at 955.941 kb on - strand at 955.941 kb on - strand at 955.941 kb on - strand at 955.941 kb on - strand at 955.946 kb on - strand at 955.946 kb on - strand at 955.946 kb on - strand at 955.946 kb on - strand at 955.946 kb on - strand at 955.946 kb on - strand at 955.946 kb on - strand at 955.956 kb on - strand at 955.999 kb on + strand at 956.002 kb on - strand at 956.065 kb on - strand at 956.135 kb on + strand at 956.135 kb on + strand at 956.135 kb on + strand at 956.143 kb on - strand at 956.143 kb on - strand at 956.146 kb on - strand at 956.146 kb on - strand at 956.146 kb on - strand at 956.146 kb on - strand at 956.332 kb on - strand at 956.384 kb on - strand at 956.384 kb on - strand at 956.384 kb on - strand at 956.469 kb on + strand at 956.493 kb on - strand at 956.620 kb on - strand at 956.701 kb on + strand at 956.763 kb on - strand, within PGA1_c09380 at 956.763 kb on - strand, within PGA1_c09380 at 956.768 kb on + strand, within PGA1_c09380 at 956.776 kb on - strand, within PGA1_c09380 at 956.776 kb on - strand, within PGA1_c09380 at 956.776 kb on - strand, within PGA1_c09380 at 956.824 kb on + strand, within PGA1_c09380 at 956.891 kb on - strand, within PGA1_c09380 at 956.918 kb on + strand, within PGA1_c09380 at 956.926 kb on - strand, within PGA1_c09380 at 956.926 kb on - strand, within PGA1_c09380 at 956.928 kb on + strand, within PGA1_c09380 at 956.931 kb on - strand, within PGA1_c09380 at 956.936 kb on - strand, within PGA1_c09380 at 956.936 kb on - strand, within PGA1_c09380 at 956.936 kb on - strand, within PGA1_c09380 at 956.971 kb on - strand, within PGA1_c09380
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cobalt chloride 0.625 mM remove 953,820 - +0.5 953,837 + +0.9 953,973 + -0.5 953,979 - +0.6 953,979 - -0.4 953,981 - +1.6 953,981 - +0.1 953,994 - +0.3 954,030 - PGA1_c09340 0.18 +1.2 954,040 - PGA1_c09340 0.23 -0.1 954,041 + PGA1_c09340 0.23 +0.3 954,050 + PGA1_c09340 0.27 -0.0 954,050 + PGA1_c09340 0.27 +0.2 954,050 + PGA1_c09340 0.27 -0.2 954,058 - PGA1_c09340 0.30 +0.9 954,058 - PGA1_c09340 0.30 -0.3 954,081 + PGA1_c09340 0.40 +0.5 954,087 + PGA1_c09340 0.42 -0.3 954,165 + PGA1_c09340 0.75 -0.6 954,173 - PGA1_c09340 0.78 -1.5 954,190 - PGA1_c09340 0.85 -1.5 954,198 + PGA1_c09340 0.88 -0.1 954,206 - +0.1 954,209 + -0.4 954,219 + -0.7 954,235 - +2.2 954,237 - -0.5 954,265 + -0.7 954,265 + +0.0 954,273 - +1.1 954,286 - -1.1 954,316 - -1.1 954,350 - -2.7 954,355 + +1.3 954,391 + +0.4 954,391 + -0.3 954,391 + +0.1 954,391 + -0.2 954,391 + -0.3 954,396 + +0.2 954,399 - -0.6 954,456 - +0.7 954,466 - -0.9 954,467 - +0.6 954,525 + +0.4 954,525 + -0.2 954,536 - +0.1 954,608 + -0.1 954,616 + -1.4 954,616 + -0.7 954,663 + +0.0 954,663 + +0.1 954,681 - +1.0 954,707 + -0.0 954,715 - +0.3 954,715 - -0.8 954,717 + +0.8 954,771 - -0.9 954,796 - PGA1_c09350 0.11 -1.2 954,981 - PGA1_c09350 0.25 +0.4 954,985 + PGA1_c09350 0.25 -2.0 955,062 + PGA1_c09350 0.31 +0.9 955,161 + PGA1_c09350 0.38 +1.1 955,169 - PGA1_c09350 0.39 -1.3 955,169 - PGA1_c09350 0.39 +0.2 955,169 - PGA1_c09350 0.39 +0.2 955,261 - PGA1_c09350 0.46 -0.5 955,263 + PGA1_c09350 0.46 -0.1 955,263 + PGA1_c09350 0.46 +0.4 955,268 + PGA1_c09350 0.46 -2.1 955,276 - PGA1_c09350 0.47 -0.8 955,390 - PGA1_c09350 0.55 +1.0 955,398 - PGA1_c09350 0.56 -0.1 955,415 + PGA1_c09350 0.57 -1.7 955,457 + PGA1_c09350 0.60 +0.0 955,470 + PGA1_c09350 0.61 +0.7 955,470 + PGA1_c09350 0.61 +0.6 955,470 + PGA1_c09350 0.61 +1.4 955,470 + PGA1_c09350 0.61 -0.0 955,470 + PGA1_c09350 0.61 +0.5 955,470 + PGA1_c09350 0.61 +2.0 955,470 + PGA1_c09350 0.61 +0.7 955,478 - PGA1_c09350 0.62 +0.4 955,478 - PGA1_c09350 0.62 +2.2 955,478 - PGA1_c09350 0.62 +1.4 955,478 - PGA1_c09350 0.62 -3.3 955,502 + PGA1_c09350 0.64 +1.1 955,587 - PGA1_c09350 0.70 +0.3 955,666 - PGA1_c09350 0.76 +1.1 955,703 + PGA1_c09350 0.78 +0.6 955,783 + PGA1_c09350 0.84 -0.2 955,845 + PGA1_c09350 0.89 -0.9 955,860 + -1.5 955,863 - +0.2 955,873 - -0.3 955,890 - -1.8 955,905 + +0.8 955,923 + +0.4 955,933 + -0.0 955,933 + -0.5 955,933 + +0.4 955,938 + +0.7 955,938 + -0.3 955,938 + +0.9 955,938 + +1.1 955,938 + +0.5 955,938 + -0.4 955,941 - -0.0 955,941 - -0.0 955,941 - -0.3 955,941 - +0.0 955,946 - +0.7 955,946 - +0.5 955,946 - +0.2 955,946 - +0.5 955,946 - +0.0 955,946 - +0.2 955,946 - +1.1 955,956 - +0.3 955,999 + -0.8 956,002 - -0.4 956,065 - -0.4 956,135 + +1.3 956,135 + -1.0 956,135 + +0.8 956,143 - -0.6 956,143 - +0.7 956,146 - +0.6 956,146 - -0.7 956,146 - +0.5 956,146 - +1.3 956,332 - +0.6 956,384 - +0.6 956,384 - -0.1 956,384 - -0.0 956,469 + -0.4 956,493 - +0.2 956,620 - -1.1 956,701 + -2.2 956,763 - PGA1_c09380 0.14 -1.0 956,763 - PGA1_c09380 0.14 +1.1 956,768 + PGA1_c09380 0.14 -0.5 956,776 - PGA1_c09380 0.15 -0.5 956,776 - PGA1_c09380 0.15 -0.4 956,776 - PGA1_c09380 0.15 -0.4 956,824 + PGA1_c09380 0.20 -0.1 956,891 - PGA1_c09380 0.28 +0.5 956,918 + PGA1_c09380 0.31 -0.2 956,926 - PGA1_c09380 0.31 -0.5 956,926 - PGA1_c09380 0.31 -1.0 956,928 + PGA1_c09380 0.32 +0.1 956,931 - PGA1_c09380 0.32 -0.6 956,936 - PGA1_c09380 0.33 +0.9 956,936 - PGA1_c09380 0.33 -0.9 956,936 - PGA1_c09380 0.33 +0.1 956,971 - PGA1_c09380 0.36 +0.3
Or see this region's nucleotide sequence