Experiment: m.b. copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3970 and HP15_3971 are separated by 4 nucleotides HP15_3971 and HP15_3972 are separated by 308 nucleotides HP15_3972 and HP15_3973 are separated by 79 nucleotides
HP15_3970: HP15_3970 - glycosyl transferase, group 2 family protein, at 4,199,936 to 4,200,910
_3970
HP15_3971: HP15_3971 - GtrA family protein, at 4,200,915 to 4,201,289
_3971
HP15_3972: HP15_3972 - conserved hypothetical protein, at 4,201,598 to 4,202,257
_3972
HP15_3973: HP15_3973 - long-chain-fatty-acid-CoA ligase, at 4,202,337 to 4,204,427
_3973
Position (kb)
4201
4202
4203 Strain fitness (log2 ratio)
-1
0
1 at 4200.621 kb on - strand, within HP15_3970 at 4200.623 kb on + strand, within HP15_3970 at 4200.641 kb on + strand, within HP15_3970 at 4200.677 kb on - strand, within HP15_3970 at 4200.677 kb on - strand, within HP15_3970 at 4200.774 kb on - strand, within HP15_3970 at 4200.865 kb on + strand at 4200.915 kb on - strand at 4200.917 kb on + strand at 4201.221 kb on + strand, within HP15_3971 at 4201.272 kb on - strand at 4201.402 kb on + strand at 4201.526 kb on + strand at 4201.531 kb on + strand at 4201.534 kb on - strand at 4201.534 kb on - strand at 4201.549 kb on - strand at 4201.629 kb on + strand at 4201.634 kb on + strand at 4201.637 kb on - strand at 4201.757 kb on + strand, within HP15_3972 at 4201.765 kb on - strand, within HP15_3972 at 4201.787 kb on + strand, within HP15_3972 at 4201.978 kb on - strand, within HP15_3972 at 4202.032 kb on - strand, within HP15_3972 at 4202.139 kb on - strand, within HP15_3972 at 4202.288 kb on - strand at 4202.382 kb on + strand at 4202.385 kb on - strand at 4202.385 kb on - strand at 4202.385 kb on - strand at 4202.390 kb on - strand at 4202.392 kb on + strand at 4202.400 kb on - strand at 4202.471 kb on - strand at 4202.508 kb on - strand at 4202.545 kb on - strand at 4202.555 kb on + strand, within HP15_3973 at 4202.726 kb on + strand, within HP15_3973 at 4202.736 kb on - strand, within HP15_3973 at 4202.794 kb on - strand, within HP15_3973 at 4202.794 kb on - strand, within HP15_3973 at 4202.829 kb on + strand, within HP15_3973 at 4202.885 kb on - strand, within HP15_3973 at 4203.052 kb on - strand, within HP15_3973 at 4203.076 kb on + strand, within HP15_3973 at 4203.100 kb on + strand, within HP15_3973 at 4203.129 kb on - strand, within HP15_3973 at 4203.178 kb on - strand, within HP15_3973 at 4203.232 kb on + strand, within HP15_3973
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 1 mM remove 4,200,621 - HP15_3970 0.70 -0.5 4,200,623 + HP15_3970 0.70 -0.5 4,200,641 + HP15_3970 0.72 -0.2 4,200,677 - HP15_3970 0.76 +0.2 4,200,677 - HP15_3970 0.76 +0.4 4,200,774 - HP15_3970 0.86 +0.8 4,200,865 + -0.5 4,200,915 - +0.1 4,200,917 + +0.8 4,201,221 + HP15_3971 0.82 +0.1 4,201,272 - -0.1 4,201,402 + +0.5 4,201,526 + +0.5 4,201,531 + +0.3 4,201,534 - +0.0 4,201,534 - -0.0 4,201,549 - +0.1 4,201,629 + -0.4 4,201,634 + +0.6 4,201,637 - +1.1 4,201,757 + HP15_3972 0.24 +0.3 4,201,765 - HP15_3972 0.25 -0.5 4,201,787 + HP15_3972 0.29 -0.1 4,201,978 - HP15_3972 0.58 +0.4 4,202,032 - HP15_3972 0.66 +0.0 4,202,139 - HP15_3972 0.82 +0.7 4,202,288 - -0.1 4,202,382 + +0.7 4,202,385 - -0.0 4,202,385 - +0.3 4,202,385 - +0.2 4,202,390 - +0.2 4,202,392 + +0.2 4,202,400 - +0.8 4,202,471 - -0.6 4,202,508 - -0.5 4,202,545 - -0.2 4,202,555 + HP15_3973 0.10 -0.0 4,202,726 + HP15_3973 0.19 -0.1 4,202,736 - HP15_3973 0.19 +0.6 4,202,794 - HP15_3973 0.22 -0.3 4,202,794 - HP15_3973 0.22 +0.0 4,202,829 + HP15_3973 0.24 +1.5 4,202,885 - HP15_3973 0.26 +0.1 4,203,052 - HP15_3973 0.34 +0.3 4,203,076 + HP15_3973 0.35 -0.1 4,203,100 + HP15_3973 0.36 +0.5 4,203,129 - HP15_3973 0.38 +0.9 4,203,178 - HP15_3973 0.40 +0.5 4,203,232 + HP15_3973 0.43 -0.1
Or see this region's nucleotide sequence