Experiment: m.b. copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2047 and HP15_2048 overlap by 4 nucleotides HP15_2048 and HP15_2049 are separated by 9 nucleotides HP15_2049 and HP15_2050 are separated by 20 nucleotides
HP15_2047: HP15_2047 - UDP-glucose 6-dehydrogenase, at 2,145,454 to 2,146,797
_2047
HP15_2048: HP15_2048 - UDP-glucose 4-epimerase, at 2,146,794 to 2,147,822
_2048
HP15_2049: HP15_2049 - cytidine/deoxycytidylate deaminase family protein, at 2,147,832 to 2,148,335
_2049
HP15_2050: HP15_2050 - bifunctional GMP synthase/glutamine amidotransferase protein, at 2,148,356 to 2,149,933
_2050
Position (kb)
2146
2147
2148 Strain fitness (log2 ratio)
-1
0
1 at 2145.875 kb on + strand, within HP15_2047 at 2146.025 kb on + strand, within HP15_2047 at 2146.186 kb on + strand, within HP15_2047 at 2146.259 kb on - strand, within HP15_2047 at 2146.411 kb on - strand, within HP15_2047 at 2146.441 kb on - strand, within HP15_2047 at 2146.617 kb on + strand, within HP15_2047 at 2146.625 kb on - strand, within HP15_2047 at 2146.676 kb on + strand at 2146.875 kb on - strand at 2146.922 kb on + strand, within HP15_2048 at 2147.059 kb on - strand, within HP15_2048 at 2147.107 kb on + strand, within HP15_2048 at 2147.137 kb on + strand, within HP15_2048 at 2147.197 kb on + strand, within HP15_2048 at 2147.376 kb on - strand, within HP15_2048 at 2147.537 kb on - strand, within HP15_2048 at 2147.537 kb on - strand, within HP15_2048 at 2147.719 kb on + strand, within HP15_2048
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 1 mM remove 2,145,875 + HP15_2047 0.31 -0.1 2,146,025 + HP15_2047 0.42 -0.4 2,146,186 + HP15_2047 0.54 +0.3 2,146,259 - HP15_2047 0.60 -0.1 2,146,411 - HP15_2047 0.71 +0.0 2,146,441 - HP15_2047 0.73 -0.4 2,146,617 + HP15_2047 0.87 +0.0 2,146,625 - HP15_2047 0.87 +0.3 2,146,676 + +0.3 2,146,875 - +0.7 2,146,922 + HP15_2048 0.12 +0.1 2,147,059 - HP15_2048 0.26 +0.6 2,147,107 + HP15_2048 0.30 -0.5 2,147,137 + HP15_2048 0.33 -0.1 2,147,197 + HP15_2048 0.39 +0.2 2,147,376 - HP15_2048 0.57 -1.0 2,147,537 - HP15_2048 0.72 -0.4 2,147,537 - HP15_2048 0.72 -0.2 2,147,719 + HP15_2048 0.90 -0.0
Or see this region's nucleotide sequence