Strain Fitness in Marinobacter adhaerens HP15 around HP15_184

Experiment: m.b. copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_183 and HP15_184 are separated by 85 nucleotidesHP15_184 and HP15_185 are separated by 203 nucleotidesHP15_185 and HP15_186 overlap by 14 nucleotides HP15_183: HP15_183 - copper-resistance protein, CopA family, at 173,011 to 174,771 _183 HP15_184: HP15_184 - copper-binding protein, at 174,857 to 175,384 _184 HP15_185: HP15_185 - two component transcriptional regulator, winged helix family, at 175,588 to 176,253 _185 HP15_186: HP15_186 - two-component sensor, at 176,240 to 177,595 _186 Position (kb) 174 175 176Strain fitness (log2 ratio) -3 -2 -1 0 1at 173.860 kb on + strand, within HP15_183at 173.869 kb on + strand, within HP15_183at 173.889 kb on + strand, within HP15_183at 173.961 kb on - strand, within HP15_183at 173.975 kb on - strand, within HP15_183at 174.007 kb on + strand, within HP15_183at 174.071 kb on + strand, within HP15_183at 174.076 kb on + strand, within HP15_183at 174.095 kb on + strand, within HP15_183at 174.097 kb on - strand, within HP15_183at 174.115 kb on + strand, within HP15_183at 174.115 kb on + strand, within HP15_183at 174.133 kb on - strand, within HP15_183at 174.145 kb on - strand, within HP15_183at 174.174 kb on + strand, within HP15_183at 174.182 kb on + strand, within HP15_183at 174.182 kb on + strand, within HP15_183at 174.182 kb on + strand, within HP15_183at 174.182 kb on + strand, within HP15_183at 174.195 kb on - strand, within HP15_183at 174.460 kb on + strand, within HP15_183at 174.536 kb on - strand, within HP15_183at 174.554 kb on - strand, within HP15_183at 174.600 kb on - strandat 174.602 kb on + strandat 174.632 kb on + strandat 174.700 kb on + strandat 174.708 kb on - strandat 174.708 kb on - strandat 174.718 kb on + strandat 174.752 kb on + strandat 174.774 kb on + strandat 174.887 kb on + strandat 174.998 kb on + strand, within HP15_184at 175.061 kb on + strand, within HP15_184at 175.108 kb on - strand, within HP15_184at 175.113 kb on - strand, within HP15_184at 175.120 kb on + strand, within HP15_184at 175.171 kb on - strand, within HP15_184at 175.203 kb on - strand, within HP15_184at 175.216 kb on + strand, within HP15_184at 175.229 kb on + strand, within HP15_184at 175.253 kb on - strand, within HP15_184at 175.277 kb on - strand, within HP15_184at 175.440 kb on - strandat 175.558 kb on - strandat 175.581 kb on - strandat 175.664 kb on + strand, within HP15_185at 175.677 kb on - strand, within HP15_185at 175.716 kb on + strand, within HP15_185at 175.763 kb on + strand, within HP15_185at 175.771 kb on - strand, within HP15_185at 175.848 kb on + strand, within HP15_185at 175.857 kb on + strand, within HP15_185at 175.857 kb on - strand, within HP15_185at 175.865 kb on - strand, within HP15_185at 175.881 kb on - strand, within HP15_185at 175.920 kb on + strand, within HP15_185at 175.960 kb on - strand, within HP15_185at 176.037 kb on - strand, within HP15_185at 176.037 kb on - strand, within HP15_185at 176.037 kb on - strand, within HP15_185at 176.043 kb on - strand, within HP15_185at 176.123 kb on + strand, within HP15_185at 176.265 kb on - strandat 176.348 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 1 mM
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173,860 + HP15_183 0.48 -2.8
173,869 + HP15_183 0.49 -2.5
173,889 + HP15_183 0.50 -2.0
173,961 - HP15_183 0.54 -1.9
173,975 - HP15_183 0.55 -2.4
174,007 + HP15_183 0.57 -2.0
174,071 + HP15_183 0.60 -2.6
174,076 + HP15_183 0.60 -2.6
174,095 + HP15_183 0.62 -1.3
174,097 - HP15_183 0.62 -2.6
174,115 + HP15_183 0.63 -2.6
174,115 + HP15_183 0.63 -3.2
174,133 - HP15_183 0.64 -2.8
174,145 - HP15_183 0.64 -0.8
174,174 + HP15_183 0.66 -2.4
174,182 + HP15_183 0.66 -2.4
174,182 + HP15_183 0.66 -2.2
174,182 + HP15_183 0.66 -2.3
174,182 + HP15_183 0.66 -2.3
174,195 - HP15_183 0.67 -1.0
174,460 + HP15_183 0.82 -0.8
174,536 - HP15_183 0.87 -2.5
174,554 - HP15_183 0.88 -1.7
174,600 - -2.5
174,602 + -2.8
174,632 + -2.2
174,700 + -2.5
174,708 - -1.7
174,708 - -2.7
174,718 + -2.7
174,752 + -2.1
174,774 + -1.3
174,887 + -0.8
174,998 + HP15_184 0.27 +0.3
175,061 + HP15_184 0.39 +0.4
175,108 - HP15_184 0.48 +1.0
175,113 - HP15_184 0.48 +1.1
175,120 + HP15_184 0.50 +0.1
175,171 - HP15_184 0.59 +1.1
175,203 - HP15_184 0.66 +0.9
175,216 + HP15_184 0.68 -0.5
175,229 + HP15_184 0.70 +0.7
175,253 - HP15_184 0.75 +0.7
175,277 - HP15_184 0.80 +0.4
175,440 - -0.2
175,558 - +0.9
175,581 - +1.1
175,664 + HP15_185 0.11 +0.1
175,677 - HP15_185 0.13 +1.0
175,716 + HP15_185 0.19 +0.6
175,763 + HP15_185 0.26 +0.4
175,771 - HP15_185 0.27 +0.9
175,848 + HP15_185 0.39 +0.7
175,857 + HP15_185 0.40 -0.1
175,857 - HP15_185 0.40 +0.1
175,865 - HP15_185 0.42 +0.4
175,881 - HP15_185 0.44 +0.3
175,920 + HP15_185 0.50 +0.2
175,960 - HP15_185 0.56 +0.3
176,037 - HP15_185 0.67 +0.9
176,037 - HP15_185 0.67 +0.2
176,037 - HP15_185 0.67 +0.7
176,043 - HP15_185 0.68 +1.0
176,123 + HP15_185 0.80 -0.2
176,265 - +0.5
176,348 - +0.4

Or see this region's nucleotide sequence