Strain Fitness in Marinobacter adhaerens HP15 around HP15_1538

Experiment: m.b. copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1537 and HP15_1538 are separated by 23 nucleotidesHP15_1538 and HP15_1539 are separated by 12 nucleotidesHP15_1539 and HP15_1540 are separated by 73 nucleotides HP15_1537: HP15_1537 - conserved hypothetical protein, at 1,621,375 to 1,622,631 _1537 HP15_1538: HP15_1538 - conserved hypothetical protein, at 1,622,655 to 1,624,124 _1538 HP15_1539: HP15_1539 - CBS domain containing protein, at 1,624,137 to 1,624,769 _1539 HP15_1540: HP15_1540 - protein YfcK, at 1,624,843 to 1,626,741 _1540 Position (kb) 1622 1623 1624 1625Strain fitness (log2 ratio) -1 0 1at 1621.665 kb on - strand, within HP15_1537at 1621.756 kb on - strand, within HP15_1537at 1621.825 kb on + strand, within HP15_1537at 1622.077 kb on + strand, within HP15_1537at 1622.077 kb on + strand, within HP15_1537at 1622.156 kb on + strand, within HP15_1537at 1622.193 kb on + strand, within HP15_1537at 1622.193 kb on + strand, within HP15_1537at 1622.193 kb on + strand, within HP15_1537at 1622.249 kb on + strand, within HP15_1537at 1622.257 kb on - strand, within HP15_1537at 1622.293 kb on + strand, within HP15_1537at 1622.301 kb on - strand, within HP15_1537at 1622.311 kb on - strand, within HP15_1537at 1622.320 kb on - strand, within HP15_1537at 1622.392 kb on - strand, within HP15_1537at 1622.472 kb on + strand, within HP15_1537at 1622.493 kb on + strand, within HP15_1537at 1622.555 kb on + strandat 1622.701 kb on - strandat 1622.713 kb on + strandat 1622.749 kb on - strandat 1622.768 kb on - strandat 1622.921 kb on - strand, within HP15_1538at 1622.967 kb on - strand, within HP15_1538at 1622.973 kb on + strand, within HP15_1538at 1622.981 kb on - strand, within HP15_1538at 1623.157 kb on + strand, within HP15_1538at 1623.212 kb on - strand, within HP15_1538at 1623.653 kb on + strand, within HP15_1538at 1623.661 kb on - strand, within HP15_1538at 1623.710 kb on + strand, within HP15_1538at 1623.710 kb on + strand, within HP15_1538at 1623.710 kb on + strand, within HP15_1538at 1623.905 kb on - strand, within HP15_1538at 1623.986 kb on + strandat 1624.093 kb on - strandat 1624.584 kb on - strand, within HP15_1539at 1624.699 kb on + strand, within HP15_1539at 1624.701 kb on - strand, within HP15_1539at 1624.804 kb on + strandat 1624.964 kb on + strandat 1624.972 kb on - strandat 1624.999 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 1 mM
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1,621,665 - HP15_1537 0.23 +0.1
1,621,756 - HP15_1537 0.30 +0.1
1,621,825 + HP15_1537 0.36 +0.1
1,622,077 + HP15_1537 0.56 +0.4
1,622,077 + HP15_1537 0.56 -0.6
1,622,156 + HP15_1537 0.62 +0.3
1,622,193 + HP15_1537 0.65 +0.2
1,622,193 + HP15_1537 0.65 +0.6
1,622,193 + HP15_1537 0.65 +0.8
1,622,249 + HP15_1537 0.70 -0.0
1,622,257 - HP15_1537 0.70 +0.4
1,622,293 + HP15_1537 0.73 -0.1
1,622,301 - HP15_1537 0.74 -0.2
1,622,311 - HP15_1537 0.74 -0.1
1,622,320 - HP15_1537 0.75 -0.3
1,622,392 - HP15_1537 0.81 +0.4
1,622,472 + HP15_1537 0.87 -0.3
1,622,493 + HP15_1537 0.89 +0.2
1,622,555 + +0.2
1,622,701 - +0.1
1,622,713 + +0.0
1,622,749 - -0.2
1,622,768 - +0.6
1,622,921 - HP15_1538 0.18 -0.4
1,622,967 - HP15_1538 0.21 +0.1
1,622,973 + HP15_1538 0.22 +0.1
1,622,981 - HP15_1538 0.22 +0.4
1,623,157 + HP15_1538 0.34 +0.1
1,623,212 - HP15_1538 0.38 +0.1
1,623,653 + HP15_1538 0.68 +0.3
1,623,661 - HP15_1538 0.68 +0.5
1,623,710 + HP15_1538 0.72 +0.1
1,623,710 + HP15_1538 0.72 -0.8
1,623,710 + HP15_1538 0.72 +0.4
1,623,905 - HP15_1538 0.85 -0.5
1,623,986 + +0.2
1,624,093 - +0.5
1,624,584 - HP15_1539 0.71 -0.3
1,624,699 + HP15_1539 0.89 -1.7
1,624,701 - HP15_1539 0.89 -0.3
1,624,804 + -0.1
1,624,964 + -0.6
1,624,972 - +0.3
1,624,999 - -0.1

Or see this region's nucleotide sequence