Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0753

Experiment: Glucose defined media 37C sample1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0752 and Psest_0753 are separated by 267 nucleotidesPsest_0753 and Psest_0754 are separated by 88 nucleotidesPsest_0754 and Psest_0755 are separated by 92 nucleotides Psest_0752: Psest_0752 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 823,433 to 824,422 _0752 Psest_0753: Psest_0753 - NADH:flavin oxidoreductases, Old Yellow Enzyme family, at 824,690 to 825,814 _0753 Psest_0754: Psest_0754 - Predicted transcriptional regulators, at 825,903 to 826,208 _0754 Psest_0755: Psest_0755 - Bacterial regulatory helix-turn-helix proteins, AraC family., at 826,301 to 827,098 _0755 Position (kb) 824 825 826Strain fitness (log2 ratio) -2 -1 0 1 2at 823.950 kb on + strand, within Psest_0752at 823.950 kb on + strand, within Psest_0752at 823.950 kb on + strand, within Psest_0752at 823.950 kb on + strand, within Psest_0752at 823.950 kb on + strand, within Psest_0752at 823.950 kb on + strand, within Psest_0752at 823.951 kb on - strand, within Psest_0752at 823.951 kb on - strand, within Psest_0752at 823.951 kb on - strand, within Psest_0752at 823.951 kb on - strand, within Psest_0752at 823.951 kb on - strand, within Psest_0752at 823.990 kb on - strand, within Psest_0752at 824.296 kb on - strand, within Psest_0752at 824.296 kb on - strand, within Psest_0752at 824.388 kb on + strandat 824.388 kb on + strandat 824.512 kb on + strandat 824.512 kb on + strandat 824.513 kb on - strandat 824.513 kb on - strandat 824.513 kb on - strandat 824.513 kb on - strandat 824.513 kb on - strandat 824.513 kb on - strandat 824.699 kb on - strandat 824.710 kb on + strandat 824.710 kb on + strandat 824.710 kb on + strandat 824.711 kb on - strandat 824.711 kb on - strandat 824.739 kb on + strandat 824.740 kb on - strandat 824.743 kb on + strandat 824.744 kb on - strandat 824.744 kb on - strandat 824.822 kb on + strand, within Psest_0753at 824.822 kb on + strand, within Psest_0753at 824.822 kb on + strand, within Psest_0753at 824.822 kb on + strand, within Psest_0753at 824.823 kb on - strand, within Psest_0753at 824.823 kb on - strand, within Psest_0753at 824.826 kb on - strand, within Psest_0753at 824.826 kb on - strand, within Psest_0753at 824.894 kb on + strand, within Psest_0753at 824.894 kb on + strand, within Psest_0753at 824.895 kb on - strand, within Psest_0753at 825.182 kb on + strand, within Psest_0753at 825.182 kb on + strand, within Psest_0753at 825.183 kb on - strand, within Psest_0753at 825.302 kb on + strand, within Psest_0753at 825.334 kb on + strand, within Psest_0753at 825.334 kb on + strand, within Psest_0753at 825.434 kb on + strand, within Psest_0753at 825.434 kb on + strand, within Psest_0753at 825.470 kb on + strand, within Psest_0753at 825.470 kb on + strand, within Psest_0753at 825.470 kb on + strand, within Psest_0753at 825.470 kb on + strand, within Psest_0753at 825.470 kb on + strand, within Psest_0753at 825.471 kb on - strand, within Psest_0753at 825.471 kb on - strand, within Psest_0753at 825.471 kb on - strand, within Psest_0753at 825.471 kb on - strand, within Psest_0753at 825.512 kb on + strand, within Psest_0753at 825.516 kb on + strand, within Psest_0753at 825.516 kb on + strand, within Psest_0753at 825.516 kb on + strand, within Psest_0753at 825.517 kb on - strand, within Psest_0753at 825.517 kb on - strand, within Psest_0753at 825.608 kb on + strand, within Psest_0753at 825.608 kb on + strand, within Psest_0753at 825.608 kb on + strand, within Psest_0753at 825.609 kb on - strand, within Psest_0753at 825.609 kb on - strand, within Psest_0753at 825.620 kb on + strand, within Psest_0753at 825.620 kb on + strand, within Psest_0753at 825.620 kb on + strand, within Psest_0753at 825.621 kb on - strand, within Psest_0753at 825.621 kb on - strand, within Psest_0753at 825.621 kb on - strand, within Psest_0753at 825.621 kb on - strand, within Psest_0753at 825.621 kb on - strand, within Psest_0753at 825.736 kb on + strandat 825.765 kb on - strandat 825.785 kb on + strandat 825.786 kb on - strandat 825.786 kb on - strandat 825.870 kb on + strandat 825.902 kb on + strandat 825.902 kb on + strandat 825.910 kb on + strandat 825.910 kb on + strandat 825.910 kb on + strandat 825.910 kb on + strandat 825.910 kb on + strandat 825.910 kb on + strandat 825.910 kb on + strandat 825.910 kb on + strandat 825.910 kb on + strandat 825.910 kb on + strandat 825.911 kb on - strandat 825.911 kb on - strandat 825.911 kb on - strandat 825.911 kb on - strandat 826.086 kb on + strand, within Psest_0754at 826.086 kb on + strand, within Psest_0754at 826.146 kb on + strand, within Psest_0754at 826.146 kb on + strand, within Psest_0754at 826.146 kb on + strand, within Psest_0754at 826.146 kb on + strand, within Psest_0754at 826.147 kb on - strand, within Psest_0754at 826.147 kb on - strand, within Psest_0754at 826.147 kb on - strand, within Psest_0754at 826.147 kb on - strand, within Psest_0754at 826.147 kb on - strand, within Psest_0754at 826.149 kb on + strand, within Psest_0754at 826.149 kb on + strand, within Psest_0754at 826.149 kb on + strand, within Psest_0754at 826.149 kb on + strand, within Psest_0754at 826.149 kb on + strand, within Psest_0754at 826.149 kb on + strand, within Psest_0754at 826.149 kb on + strand, within Psest_0754at 826.150 kb on - strand, within Psest_0754at 826.150 kb on - strand, within Psest_0754at 826.150 kb on - strand, within Psest_0754at 826.150 kb on - strand, within Psest_0754at 826.150 kb on - strand, within Psest_0754at 826.150 kb on - strand, within Psest_0754at 826.150 kb on - strand, within Psest_0754at 826.150 kb on - strand, within Psest_0754at 826.493 kb on + strand, within Psest_0755at 826.493 kb on + strand, within Psest_0755at 826.493 kb on + strand, within Psest_0755at 826.493 kb on + strand, within Psest_0755at 826.494 kb on - strand, within Psest_0755at 826.494 kb on - strand, within Psest_0755at 826.494 kb on - strand, within Psest_0755at 826.494 kb on - strand, within Psest_0755at 826.494 kb on - strand, within Psest_0755at 826.494 kb on - strand, within Psest_0755at 826.494 kb on - strand, within Psest_0755at 826.494 kb on - strand, within Psest_0755at 826.494 kb on - strand, within Psest_0755at 826.598 kb on + strand, within Psest_0755at 826.598 kb on + strand, within Psest_0755at 826.598 kb on + strand, within Psest_0755at 826.599 kb on - strand, within Psest_0755at 826.599 kb on - strand, within Psest_0755at 826.744 kb on + strand, within Psest_0755at 826.745 kb on - strand, within Psest_0755at 826.745 kb on - strand, within Psest_0755at 826.745 kb on - strand, within Psest_0755

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucose defined media 37C sample1
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823,950 + Psest_0752 0.52 -0.4
823,950 + Psest_0752 0.52 +0.2
823,950 + Psest_0752 0.52 -0.3
823,950 + Psest_0752 0.52 -0.4
823,950 + Psest_0752 0.52 +0.4
823,950 + Psest_0752 0.52 +0.8
823,951 - Psest_0752 0.52 -1.0
823,951 - Psest_0752 0.52 +0.2
823,951 - Psest_0752 0.52 -1.7
823,951 - Psest_0752 0.52 +0.9
823,951 - Psest_0752 0.52 -0.7
823,990 - Psest_0752 0.56 -0.3
824,296 - Psest_0752 0.87 -1.7
824,296 - Psest_0752 0.87 +0.9
824,388 + +0.9
824,388 + +0.4
824,512 + +1.2
824,512 + +0.5
824,513 - -1.4
824,513 - -0.7
824,513 - -0.1
824,513 - +0.9
824,513 - +0.1
824,513 - +0.6
824,699 - -0.5
824,710 + +0.4
824,710 + -0.7
824,710 + +0.7
824,711 - -0.5
824,711 - +1.1
824,739 + +0.9
824,740 - +2.2
824,743 + +0.5
824,744 - -1.3
824,744 - -0.5
824,822 + Psest_0753 0.12 -0.2
824,822 + Psest_0753 0.12 +0.1
824,822 + Psest_0753 0.12 +0.1
824,822 + Psest_0753 0.12 +0.6
824,823 - Psest_0753 0.12 +0.3
824,823 - Psest_0753 0.12 +1.9
824,826 - Psest_0753 0.12 +0.1
824,826 - Psest_0753 0.12 +2.5
824,894 + Psest_0753 0.18 +0.2
824,894 + Psest_0753 0.18 +0.5
824,895 - Psest_0753 0.18 -0.6
825,182 + Psest_0753 0.44 +0.3
825,182 + Psest_0753 0.44 +1.2
825,183 - Psest_0753 0.44 -1.4
825,302 + Psest_0753 0.54 +0.1
825,334 + Psest_0753 0.57 -0.4
825,334 + Psest_0753 0.57 -0.1
825,434 + Psest_0753 0.66 +0.3
825,434 + Psest_0753 0.66 -0.2
825,470 + Psest_0753 0.69 +1.2
825,470 + Psest_0753 0.69 +0.3
825,470 + Psest_0753 0.69 +1.1
825,470 + Psest_0753 0.69 +0.5
825,470 + Psest_0753 0.69 +0.4
825,471 - Psest_0753 0.69 +0.4
825,471 - Psest_0753 0.69 +0.6
825,471 - Psest_0753 0.69 +0.6
825,471 - Psest_0753 0.69 +1.5
825,512 + Psest_0753 0.73 -0.4
825,516 + Psest_0753 0.73 -0.9
825,516 + Psest_0753 0.73 +0.0
825,516 + Psest_0753 0.73 +1.5
825,517 - Psest_0753 0.74 +0.6
825,517 - Psest_0753 0.74 +1.2
825,608 + Psest_0753 0.82 +0.0
825,608 + Psest_0753 0.82 +0.3
825,608 + Psest_0753 0.82 +0.4
825,609 - Psest_0753 0.82 -0.3
825,609 - Psest_0753 0.82 -1.1
825,620 + Psest_0753 0.83 +0.0
825,620 + Psest_0753 0.83 -0.9
825,620 + Psest_0753 0.83 +0.5
825,621 - Psest_0753 0.83 +1.1
825,621 - Psest_0753 0.83 +1.5
825,621 - Psest_0753 0.83 -0.0
825,621 - Psest_0753 0.83 +0.9
825,621 - Psest_0753 0.83 +0.3
825,736 + +0.3
825,765 - +1.1
825,785 + +0.5
825,786 - +0.1
825,786 - +0.7
825,870 + +1.4
825,902 + -0.2
825,902 + +0.1
825,910 + +0.0
825,910 + -1.1
825,910 + -0.2
825,910 + -0.0
825,910 + +0.6
825,910 + -0.7
825,910 + -0.3
825,910 + +0.5
825,910 + -0.2
825,910 + +0.3
825,911 - -0.3
825,911 - +0.0
825,911 - +0.4
825,911 - +0.3
826,086 + Psest_0754 0.60 +0.1
826,086 + Psest_0754 0.60 -0.7
826,146 + Psest_0754 0.79 +1.3
826,146 + Psest_0754 0.79 -0.3
826,146 + Psest_0754 0.79 -2.3
826,146 + Psest_0754 0.79 +0.0
826,147 - Psest_0754 0.80 -0.5
826,147 - Psest_0754 0.80 -0.6
826,147 - Psest_0754 0.80 -0.1
826,147 - Psest_0754 0.80 +0.1
826,147 - Psest_0754 0.80 -0.5
826,149 + Psest_0754 0.80 +1.1
826,149 + Psest_0754 0.80 -0.3
826,149 + Psest_0754 0.80 +0.0
826,149 + Psest_0754 0.80 -1.6
826,149 + Psest_0754 0.80 -0.7
826,149 + Psest_0754 0.80 +0.2
826,149 + Psest_0754 0.80 +0.3
826,150 - Psest_0754 0.81 -1.1
826,150 - Psest_0754 0.81 -1.1
826,150 - Psest_0754 0.81 +0.4
826,150 - Psest_0754 0.81 -0.3
826,150 - Psest_0754 0.81 -0.7
826,150 - Psest_0754 0.81 -1.9
826,150 - Psest_0754 0.81 +0.2
826,150 - Psest_0754 0.81 +0.5
826,493 + Psest_0755 0.24 +0.7
826,493 + Psest_0755 0.24 +0.0
826,493 + Psest_0755 0.24 +0.2
826,493 + Psest_0755 0.24 -0.1
826,494 - Psest_0755 0.24 -1.2
826,494 - Psest_0755 0.24 +0.0
826,494 - Psest_0755 0.24 +0.9
826,494 - Psest_0755 0.24 -0.6
826,494 - Psest_0755 0.24 +0.0
826,494 - Psest_0755 0.24 +0.6
826,494 - Psest_0755 0.24 -0.0
826,494 - Psest_0755 0.24 +0.7
826,494 - Psest_0755 0.24 +0.2
826,598 + Psest_0755 0.37 -0.1
826,598 + Psest_0755 0.37 -0.6
826,598 + Psest_0755 0.37 +0.3
826,599 - Psest_0755 0.37 -0.1
826,599 - Psest_0755 0.37 -0.2
826,744 + Psest_0755 0.56 -0.1
826,745 - Psest_0755 0.56 -0.4
826,745 - Psest_0755 0.56 +1.5
826,745 - Psest_0755 0.56 +0.9

Or see this region's nucleotide sequence