Strain Fitness in Shewanella oneidensis MR-1 around SO3054

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,165,637	-		SO3052	0.67	-0.1
3,165,683	-		SO3052	0.70	-2.1
3,165,703	-		SO3052	0.71	-0.1
3,165,753	+		SO3052	0.74	-0.0
3,165,800	-		SO3052	0.77	+0.2
3,165,822	+		SO3052	0.78	+0.0
3,165,831	-		SO3052	0.79	-2.3
3,165,855	+		SO3052	0.80	-0.5
3,166,002	+		SO3052	0.88	-0.1
3,166,002	+		SO3052	0.88	+0.8
3,166,010	+		SO3052	0.89	+0.4
3,166,010	-		SO3052	0.89	-1.4
3,166,094	+				-0.0
3,166,216	+				-0.0
3,166,233	+				+0.1
3,166,312	+				+0.2
3,166,312	+				-0.2
3,166,312	+				+0.4
3,166,355	-				-0.5
3,166,355	-				-1.0
3,166,355	-				-0.0
3,166,355	-				+1.3
3,166,360	-				-0.1
3,166,557	-				+0.4
3,166,573	+				+2.4
3,166,584	+				-0.3
3,166,606	+				+0.1
3,166,674	+		SO3054	0.17	+0.5
3,166,674	+		SO3054	0.17	-0.5
3,166,674	+		SO3054	0.17	-0.3
3,166,674	+		SO3054	0.17	-0.3
3,166,682	-		SO3054	0.18	-0.4
3,166,742	-		SO3054	0.28	-0.3
3,166,781	-		SO3054	0.34	-0.4
3,166,840	+		SO3054	0.43	-0.5
3,167,253	+				+0.6
3,167,375	-				+0.2
3,167,375	-				-0.4
3,167,521	+				-0.4
3,167,552	+	pip	SO3055	0.12	+0.3
3,167,559	-	pip	SO3055	0.13	-0.2
3,167,559	-	pip	SO3055	0.13	-0.1
3,167,559	-	pip	SO3055	0.13	-0.2
3,167,770	+	pip	SO3055	0.29	+1.7
3,167,772	+	pip	SO3055	0.29	+0.4
3,167,772	+	pip	SO3055	0.29	-0.5
3,167,808	+	pip	SO3055	0.32	-0.3
3,167,863	+	pip	SO3055	0.36	-0.0
3,167,865	-	pip	SO3055	0.37	-0.2
3,167,869	+	pip	SO3055	0.37	+0.1
3,167,914	-	pip	SO3055	0.40	-0.2
3,167,924	-	pip	SO3055	0.41	-0.2
3,167,989	-	pip	SO3055	0.46	+0.1
3,168,015	-	pip	SO3055	0.48	-2.0
3,168,051	+	pip	SO3055	0.51	-0.1
3,168,059	-	pip	SO3055	0.52	+0.5
3,168,100	+	pip	SO3055	0.55	+0.7