Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c10160

Experiment: m.b. Nickel (II) chloride 0.625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c10150 and PGA1_c10160 are separated by 10 nucleotidesPGA1_c10160 and PGA1_c10170 are separated by 87 nucleotides PGA1_c10150: PGA1_c10150 - amidohydrolase, at 1,050,244 to 1,051,410 _c10150 PGA1_c10160: PGA1_c10160 - amidohydrolase, at 1,051,421 to 1,052,587 _c10160 PGA1_c10170: PGA1_c10170 - putative hippurate hydrolase, at 1,052,675 to 1,053,838 _c10170 Position (kb) 1051 1052 1053Strain fitness (log2 ratio) -2 -1 0 1 2at 1050.449 kb on + strand, within PGA1_c10150at 1050.457 kb on - strand, within PGA1_c10150at 1050.457 kb on - strand, within PGA1_c10150at 1050.457 kb on - strand, within PGA1_c10150at 1050.478 kb on + strand, within PGA1_c10150at 1050.500 kb on - strand, within PGA1_c10150at 1050.516 kb on + strand, within PGA1_c10150at 1050.524 kb on - strand, within PGA1_c10150at 1050.533 kb on - strand, within PGA1_c10150at 1050.572 kb on + strand, within PGA1_c10150at 1050.713 kb on - strand, within PGA1_c10150at 1050.733 kb on - strand, within PGA1_c10150at 1050.795 kb on - strand, within PGA1_c10150at 1050.931 kb on - strand, within PGA1_c10150at 1050.972 kb on + strand, within PGA1_c10150at 1050.980 kb on - strand, within PGA1_c10150at 1051.019 kb on + strand, within PGA1_c10150at 1051.032 kb on - strand, within PGA1_c10150at 1051.122 kb on + strand, within PGA1_c10150at 1051.130 kb on - strand, within PGA1_c10150at 1051.130 kb on - strand, within PGA1_c10150at 1051.130 kb on - strand, within PGA1_c10150at 1051.217 kb on - strand, within PGA1_c10150at 1051.228 kb on - strand, within PGA1_c10150at 1051.280 kb on + strand, within PGA1_c10150at 1051.369 kb on - strandat 1051.392 kb on + strandat 1051.392 kb on + strandat 1051.559 kb on - strand, within PGA1_c10160at 1051.669 kb on + strand, within PGA1_c10160at 1051.677 kb on - strand, within PGA1_c10160at 1051.677 kb on - strand, within PGA1_c10160at 1051.677 kb on - strand, within PGA1_c10160at 1051.679 kb on - strand, within PGA1_c10160at 1051.729 kb on - strand, within PGA1_c10160at 1051.741 kb on + strand, within PGA1_c10160at 1051.759 kb on + strand, within PGA1_c10160at 1051.776 kb on + strand, within PGA1_c10160at 1051.895 kb on + strand, within PGA1_c10160at 1051.895 kb on + strand, within PGA1_c10160at 1051.898 kb on - strand, within PGA1_c10160at 1051.900 kb on + strand, within PGA1_c10160at 1051.900 kb on + strand, within PGA1_c10160at 1051.925 kb on + strand, within PGA1_c10160at 1051.926 kb on + strand, within PGA1_c10160at 1051.926 kb on + strand, within PGA1_c10160at 1051.934 kb on - strand, within PGA1_c10160at 1051.934 kb on - strand, within PGA1_c10160at 1051.964 kb on + strand, within PGA1_c10160at 1051.964 kb on + strand, within PGA1_c10160at 1051.966 kb on - strand, within PGA1_c10160at 1051.974 kb on + strand, within PGA1_c10160at 1052.003 kb on - strand, within PGA1_c10160at 1052.025 kb on + strand, within PGA1_c10160at 1052.027 kb on + strand, within PGA1_c10160at 1052.123 kb on + strand, within PGA1_c10160at 1052.208 kb on + strand, within PGA1_c10160at 1052.321 kb on - strand, within PGA1_c10160at 1052.353 kb on + strand, within PGA1_c10160at 1052.393 kb on - strand, within PGA1_c10160at 1052.404 kb on + strand, within PGA1_c10160at 1052.501 kb on + strandat 1052.568 kb on + strandat 1052.576 kb on - strandat 1052.632 kb on + strandat 1052.638 kb on + strandat 1052.702 kb on + strandat 1052.722 kb on - strandat 1052.776 kb on - strandat 1052.871 kb on + strand, within PGA1_c10170at 1052.874 kb on - strand, within PGA1_c10170at 1052.878 kb on - strand, within PGA1_c10170at 1052.888 kb on - strand, within PGA1_c10170at 1052.928 kb on + strand, within PGA1_c10170at 1053.057 kb on + strand, within PGA1_c10170at 1053.319 kb on + strand, within PGA1_c10170at 1053.347 kb on - strand, within PGA1_c10170at 1053.359 kb on + strand, within PGA1_c10170at 1053.378 kb on + strand, within PGA1_c10170at 1053.412 kb on + strand, within PGA1_c10170at 1053.460 kb on + strand, within PGA1_c10170at 1053.573 kb on - strand, within PGA1_c10170

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.625 mM
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1,050,449 + PGA1_c10150 0.18 -1.1
1,050,457 - PGA1_c10150 0.18 -0.6
1,050,457 - PGA1_c10150 0.18 -0.4
1,050,457 - PGA1_c10150 0.18 +1.2
1,050,478 + PGA1_c10150 0.20 -1.4
1,050,500 - PGA1_c10150 0.22 -0.6
1,050,516 + PGA1_c10150 0.23 +0.1
1,050,524 - PGA1_c10150 0.24 +0.3
1,050,533 - PGA1_c10150 0.25 +0.5
1,050,572 + PGA1_c10150 0.28 +0.2
1,050,713 - PGA1_c10150 0.40 +0.9
1,050,733 - PGA1_c10150 0.42 -1.3
1,050,795 - PGA1_c10150 0.47 -1.5
1,050,931 - PGA1_c10150 0.59 -0.8
1,050,972 + PGA1_c10150 0.62 +0.8
1,050,980 - PGA1_c10150 0.63 +0.5
1,051,019 + PGA1_c10150 0.66 -0.9
1,051,032 - PGA1_c10150 0.68 +1.2
1,051,122 + PGA1_c10150 0.75 -0.2
1,051,130 - PGA1_c10150 0.76 +0.1
1,051,130 - PGA1_c10150 0.76 +1.0
1,051,130 - PGA1_c10150 0.76 -1.6
1,051,217 - PGA1_c10150 0.83 +0.6
1,051,228 - PGA1_c10150 0.84 -0.7
1,051,280 + PGA1_c10150 0.89 -0.6
1,051,369 - -0.0
1,051,392 + +0.3
1,051,392 + +0.1
1,051,559 - PGA1_c10160 0.12 +1.5
1,051,669 + PGA1_c10160 0.21 +0.3
1,051,677 - PGA1_c10160 0.22 -0.3
1,051,677 - PGA1_c10160 0.22 +1.3
1,051,677 - PGA1_c10160 0.22 +1.4
1,051,679 - PGA1_c10160 0.22 +1.1
1,051,729 - PGA1_c10160 0.26 -0.9
1,051,741 + PGA1_c10160 0.27 -0.2
1,051,759 + PGA1_c10160 0.29 -1.8
1,051,776 + PGA1_c10160 0.30 +1.2
1,051,895 + PGA1_c10160 0.41 -0.4
1,051,895 + PGA1_c10160 0.41 -1.9
1,051,898 - PGA1_c10160 0.41 -0.7
1,051,900 + PGA1_c10160 0.41 -0.1
1,051,900 + PGA1_c10160 0.41 -0.1
1,051,925 + PGA1_c10160 0.43 +0.1
1,051,926 + PGA1_c10160 0.43 -0.0
1,051,926 + PGA1_c10160 0.43 -0.6
1,051,934 - PGA1_c10160 0.44 -0.1
1,051,934 - PGA1_c10160 0.44 +0.7
1,051,964 + PGA1_c10160 0.47 +0.3
1,051,964 + PGA1_c10160 0.47 +0.9
1,051,966 - PGA1_c10160 0.47 +0.9
1,051,974 + PGA1_c10160 0.47 +0.2
1,052,003 - PGA1_c10160 0.50 +0.0
1,052,025 + PGA1_c10160 0.52 +0.5
1,052,027 + PGA1_c10160 0.52 +1.0
1,052,123 + PGA1_c10160 0.60 +2.2
1,052,208 + PGA1_c10160 0.67 -2.0
1,052,321 - PGA1_c10160 0.77 +0.2
1,052,353 + PGA1_c10160 0.80 +1.1
1,052,393 - PGA1_c10160 0.83 -0.8
1,052,404 + PGA1_c10160 0.84 +1.1
1,052,501 + +0.4
1,052,568 + +0.5
1,052,576 - +0.5
1,052,632 + -1.5
1,052,638 + -0.7
1,052,702 + -0.8
1,052,722 - -2.0
1,052,776 - +0.5
1,052,871 + PGA1_c10170 0.17 +0.8
1,052,874 - PGA1_c10170 0.17 +1.3
1,052,878 - PGA1_c10170 0.17 -0.2
1,052,888 - PGA1_c10170 0.18 +0.5
1,052,928 + PGA1_c10170 0.22 +1.1
1,053,057 + PGA1_c10170 0.33 +0.1
1,053,319 + PGA1_c10170 0.55 +0.3
1,053,347 - PGA1_c10170 0.58 +0.2
1,053,359 + PGA1_c10170 0.59 +0.4
1,053,378 + PGA1_c10170 0.60 +0.0
1,053,412 + PGA1_c10170 0.63 -0.1
1,053,460 + PGA1_c10170 0.67 +0.5
1,053,573 - PGA1_c10170 0.77 -1.5

Or see this region's nucleotide sequence