Experiment: m.b. Nickel (II) chloride 0.625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c09220 and PGA1_c09230 are separated by 238 nucleotides PGA1_c09230 and PGA1_c09240 overlap by 4 nucleotides PGA1_c09240 and PGA1_c09250 are separated by 34 nucleotides
PGA1_c09220: PGA1_c09220 - Predicted CoA-binding protein, at 946,196 to 946,666
_c09220
PGA1_c09230: PGA1_c09230 - phosphoribosyl-ATP pyrophosphatase HisE, at 946,905 to 947,222
_c09230
PGA1_c09240: PGA1_c09240 - imidazole glycerol phosphate synthase subunit HisF, at 947,219 to 947,980
_c09240
PGA1_c09250: PGA1_c09250 - Protein of unknown function (DUF2867)., at 948,015 to 948,497
_c09250
Position (kb) 946
947
948 Strain fitness (log2 ratio) -1
0
1 at 946.013 kb on - strand at 946.022 kb on + strand at 946.030 kb on - strand at 946.085 kb on - strand at 946.124 kb on + strand at 946.204 kb on - strand at 946.266 kb on - strand, within PGA1_c09220 at 946.269 kb on + strand, within PGA1_c09220 at 946.329 kb on - strand, within PGA1_c09220 at 946.371 kb on - strand, within PGA1_c09220 at 946.382 kb on + strand, within PGA1_c09220 at 946.451 kb on - strand, within PGA1_c09220 at 946.483 kb on + strand, within PGA1_c09220 at 946.518 kb on + strand, within PGA1_c09220 at 946.518 kb on + strand, within PGA1_c09220 at 946.518 kb on + strand, within PGA1_c09220 at 946.528 kb on + strand, within PGA1_c09220 at 946.546 kb on + strand, within PGA1_c09220 at 946.567 kb on - strand, within PGA1_c09220 at 946.616 kb on + strand, within PGA1_c09220 at 946.878 kb on + strand at 948.010 kb on + strand at 948.020 kb on - strand at 948.054 kb on - strand at 948.054 kb on - strand at 948.093 kb on - strand, within PGA1_c09250 at 948.115 kb on + strand, within PGA1_c09250 at 948.160 kb on + strand, within PGA1_c09250
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.625 mM remove 946,013 - +0.3 946,022 + +1.2 946,030 - +0.5 946,085 - +0.5 946,124 + -0.8 946,204 - -1.4 946,266 - PGA1_c09220 0.15 +0.2 946,269 + PGA1_c09220 0.15 +0.0 946,329 - PGA1_c09220 0.28 -0.2 946,371 - PGA1_c09220 0.37 -1.5 946,382 + PGA1_c09220 0.39 -0.4 946,451 - PGA1_c09220 0.54 -0.1 946,483 + PGA1_c09220 0.61 -0.3 946,518 + PGA1_c09220 0.68 +0.1 946,518 + PGA1_c09220 0.68 +0.2 946,518 + PGA1_c09220 0.68 +1.1 946,528 + PGA1_c09220 0.70 +1.2 946,546 + PGA1_c09220 0.74 +0.8 946,567 - PGA1_c09220 0.79 +0.0 946,616 + PGA1_c09220 0.89 +0.2 946,878 + -0.5 948,010 + +0.0 948,020 - -0.1 948,054 - +0.6 948,054 - -0.5 948,093 - PGA1_c09250 0.16 -0.4 948,115 + PGA1_c09250 0.21 +0.4 948,160 + PGA1_c09250 0.30 -0.9
Or see this region's nucleotide sequence