Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c06350

Experiment: m.b. Nickel (II) chloride 0.625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c06340 and PGA1_c06350 are separated by 25 nucleotidesPGA1_c06350 and PGA1_c06360 are separated by 241 nucleotidesPGA1_c06360 and PGA1_c06370 are separated by 219 nucleotides PGA1_c06340: PGA1_c06340 - putative FAD linked oxidase, at 648,677 to 650,101 _c06340 PGA1_c06350: PGA1_c06350 - putative MFS-type transporter, at 650,127 to 651,347 _c06350 PGA1_c06360: PGA1_c06360 - Secreted and surface protein containing fasciclin-like repeats, at 651,589 to 652,065 _c06360 PGA1_c06370: PGA1_c06370 - adenine phosphoribosyltransferase Apt, at 652,285 to 652,824 _c06370 Position (kb) 650 651 652Strain fitness (log2 ratio) -2 -1 0 1 2at 650.134 kb on + strandat 650.264 kb on - strand, within PGA1_c06350at 650.277 kb on + strand, within PGA1_c06350at 650.366 kb on + strand, within PGA1_c06350at 650.374 kb on - strand, within PGA1_c06350at 650.381 kb on - strand, within PGA1_c06350at 650.428 kb on - strand, within PGA1_c06350at 650.460 kb on - strand, within PGA1_c06350at 650.462 kb on + strand, within PGA1_c06350at 650.485 kb on - strand, within PGA1_c06350at 650.579 kb on + strand, within PGA1_c06350at 650.604 kb on + strand, within PGA1_c06350at 650.718 kb on - strand, within PGA1_c06350at 650.749 kb on + strand, within PGA1_c06350at 650.794 kb on - strand, within PGA1_c06350at 650.835 kb on + strand, within PGA1_c06350at 650.843 kb on - strand, within PGA1_c06350at 650.923 kb on + strand, within PGA1_c06350at 650.938 kb on + strand, within PGA1_c06350at 651.084 kb on + strand, within PGA1_c06350at 651.097 kb on - strand, within PGA1_c06350at 651.153 kb on + strand, within PGA1_c06350at 651.158 kb on + strand, within PGA1_c06350at 651.178 kb on + strand, within PGA1_c06350at 651.189 kb on - strand, within PGA1_c06350at 651.216 kb on + strand, within PGA1_c06350at 651.402 kb on - strandat 651.412 kb on - strandat 651.482 kb on + strandat 651.537 kb on + strandat 651.537 kb on + strandat 651.537 kb on + strandat 651.537 kb on + strandat 651.537 kb on + strandat 651.537 kb on + strandat 651.545 kb on + strandat 651.545 kb on - strandat 651.545 kb on - strandat 651.545 kb on - strandat 651.545 kb on - strandat 651.545 kb on - strandat 651.545 kb on - strandat 651.545 kb on - strandat 651.636 kb on - strandat 651.685 kb on + strand, within PGA1_c06360at 651.693 kb on - strand, within PGA1_c06360at 651.693 kb on - strand, within PGA1_c06360at 651.698 kb on - strand, within PGA1_c06360at 651.709 kb on + strand, within PGA1_c06360at 651.719 kb on - strand, within PGA1_c06360at 651.763 kb on + strand, within PGA1_c06360at 651.771 kb on - strand, within PGA1_c06360at 651.868 kb on + strand, within PGA1_c06360at 651.899 kb on + strand, within PGA1_c06360at 651.907 kb on - strand, within PGA1_c06360at 651.908 kb on - strand, within PGA1_c06360at 651.923 kb on + strand, within PGA1_c06360at 651.926 kb on - strand, within PGA1_c06360at 651.926 kb on - strand, within PGA1_c06360at 651.993 kb on - strand, within PGA1_c06360at 652.042 kb on + strandat 652.042 kb on + strandat 652.050 kb on - strandat 652.068 kb on + strandat 652.080 kb on + strandat 652.088 kb on - strandat 652.101 kb on - strandat 652.113 kb on + strandat 652.121 kb on - strandat 652.121 kb on - strandat 652.121 kb on - strandat 652.300 kb on - strandat 652.306 kb on - strandat 652.317 kb on + strandat 652.341 kb on - strand, within PGA1_c06370

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 0.625 mM
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650,134 + -0.1
650,264 - PGA1_c06350 0.11 -1.0
650,277 + PGA1_c06350 0.12 -0.7
650,366 + PGA1_c06350 0.20 +0.8
650,374 - PGA1_c06350 0.20 -1.3
650,381 - PGA1_c06350 0.21 +0.3
650,428 - PGA1_c06350 0.25 +0.4
650,460 - PGA1_c06350 0.27 +0.1
650,462 + PGA1_c06350 0.27 +0.3
650,485 - PGA1_c06350 0.29 -2.4
650,579 + PGA1_c06350 0.37 +0.7
650,604 + PGA1_c06350 0.39 +0.5
650,718 - PGA1_c06350 0.48 -0.4
650,749 + PGA1_c06350 0.51 -0.3
650,794 - PGA1_c06350 0.55 -1.1
650,835 + PGA1_c06350 0.58 +1.0
650,843 - PGA1_c06350 0.59 -0.5
650,923 + PGA1_c06350 0.65 -1.4
650,938 + PGA1_c06350 0.66 -0.8
651,084 + PGA1_c06350 0.78 -1.6
651,097 - PGA1_c06350 0.79 +0.1
651,153 + PGA1_c06350 0.84 +0.0
651,158 + PGA1_c06350 0.84 -0.2
651,178 + PGA1_c06350 0.86 -0.2
651,189 - PGA1_c06350 0.87 -1.7
651,216 + PGA1_c06350 0.89 -0.5
651,402 - -1.5
651,412 - +0.2
651,482 + +1.6
651,537 + -0.3
651,537 + +0.6
651,537 + +0.0
651,537 + +0.4
651,537 + +0.9
651,537 + -0.9
651,545 + +0.7
651,545 - -0.4
651,545 - -0.0
651,545 - -1.9
651,545 - +0.8
651,545 - +0.0
651,545 - -0.9
651,545 - -0.1
651,636 - +0.5
651,685 + PGA1_c06360 0.20 +1.8
651,693 - PGA1_c06360 0.22 -1.6
651,693 - PGA1_c06360 0.22 -2.3
651,698 - PGA1_c06360 0.23 -1.1
651,709 + PGA1_c06360 0.25 +1.5
651,719 - PGA1_c06360 0.27 -0.2
651,763 + PGA1_c06360 0.36 +2.4
651,771 - PGA1_c06360 0.38 -0.3
651,868 + PGA1_c06360 0.58 +0.4
651,899 + PGA1_c06360 0.65 +0.7
651,907 - PGA1_c06360 0.67 +0.1
651,908 - PGA1_c06360 0.67 -0.5
651,923 + PGA1_c06360 0.70 -0.9
651,926 - PGA1_c06360 0.71 -1.1
651,926 - PGA1_c06360 0.71 +0.2
651,993 - PGA1_c06360 0.85 -0.8
652,042 + -1.2
652,042 + -0.6
652,050 - +0.2
652,068 + -0.9
652,080 + -1.9
652,088 - +0.0
652,101 - +0.5
652,113 + +0.8
652,121 - +1.5
652,121 - +0.4
652,121 - -0.6
652,300 - +0.3
652,306 - +0.0
652,317 + -0.1
652,341 - PGA1_c06370 0.10 -1.7

Or see this region's nucleotide sequence